Wall clock time and date at job start Tue Mar 31 2020 20:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.47257 * 2 1 4 4 C 1.36594 * 126.57777 * 269.97574 * 3 2 1 5 5 C 1.47522 * 125.77286 * 359.97367 * 4 3 2 6 6 O 1.21596 * 120.00158 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00104 * 179.97438 * 5 4 3 8 8 C 1.46500 * 120.00101 * 180.02562 * 7 5 4 9 9 H 1.09005 * 109.49192 * 324.99844 * 8 7 5 10 10 C 1.53188 * 109.50001 * 85.06202 * 8 7 5 11 11 N 1.46923 * 108.77604 * 174.58602 * 10 8 7 12 12 C 1.36938 * 120.63108 * 126.41547 * 11 10 8 13 13 H 1.08004 * 119.99720 * 332.28811 * 12 11 10 14 14 C 1.38809 * 120.00030 * 152.28328 * 12 11 10 15 15 N 1.31615 * 120.00078 * 342.60346 * 14 12 11 16 16 Si 1.86803 * 119.99979 * 162.59896 * 14 12 11 17 17 H 1.48502 * 109.46869 * 94.34885 * 16 14 12 18 18 H 1.48493 * 109.47399 * 214.34985 * 16 14 12 19 19 H 1.48502 * 109.46833 * 334.35444 * 16 14 12 20 20 C 1.46929 * 118.73802 * 306.39430 * 11 10 8 21 21 C 1.53186 * 108.77606 * 53.60871 * 20 11 10 22 22 C 1.53036 * 109.49545 * 204.93882 * 8 7 5 23 23 H 1.08996 * 109.45991 * 298.69984 * 22 8 7 24 24 C 1.52994 * 109.46535 * 58.66220 * 22 8 7 25 25 N 1.34397 * 108.45445 * 179.97438 * 4 3 2 26 26 N 1.28760 * 109.52640 * 0.02562 * 25 4 3 27 27 N 1.34811 * 126.58030 * 89.94480 * 3 2 1 28 28 C 1.46498 * 126.59468 * 0.02822 * 27 3 2 29 29 C 1.52999 * 109.46794 * 270.02019 * 28 27 3 30 30 H 1.08998 * 109.47237 * 300.00498 * 1 2 3 31 31 H 1.09000 * 109.46896 * 60.00016 * 1 2 3 32 32 H 1.09003 * 109.47239 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47880 * 239.99865 * 2 1 3 34 34 H 1.09000 * 109.46896 * 119.99984 * 2 1 3 35 35 H 0.97004 * 119.99991 * 0.02562 * 7 5 4 36 36 H 1.08997 * 109.58426 * 294.37837 * 10 8 7 37 37 H 1.09003 * 109.57996 * 54.80082 * 10 8 7 38 38 H 0.97005 * 120.00133 * 180.02562 * 15 14 12 39 39 H 1.09008 * 109.58453 * 173.39569 * 20 11 10 40 40 H 1.08997 * 109.58869 * 293.81742 * 20 11 10 41 41 H 1.09003 * 109.50023 * 65.31594 * 21 20 11 42 42 H 1.09001 * 109.49827 * 185.40883 * 21 20 11 43 43 H 1.08996 * 109.47419 * 60.00038 * 24 22 8 44 44 H 1.09005 * 109.47537 * 180.02562 * 24 22 8 45 45 H 1.09000 * 109.46679 * 299.99954 * 24 22 8 46 46 H 1.08999 * 109.47786 * 30.01823 * 28 27 3 47 47 H 1.08996 * 109.47326 * 150.02391 * 28 27 3 48 48 H 1.09007 * 109.47285 * 60.00420 * 29 28 27 49 49 H 1.09011 * 109.47338 * 179.97438 * 29 28 27 50 50 H 1.09000 * 109.47340 * 299.99877 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3042 2.1881 -1.0969 5 6 2.1561 1.7661 -2.5027 6 8 1.7612 0.6458 -2.7628 7 7 2.4586 2.6221 -3.4988 8 6 2.3111 2.2032 -4.8948 9 1 2.5632 1.1466 -4.9861 10 6 0.8636 2.4242 -5.3448 11 7 0.7630 2.1228 -6.7792 12 6 -0.1680 1.2312 -7.2412 13 1 -0.5163 0.4339 -6.6013 14 6 -0.6642 1.3522 -8.5320 15 7 -0.5198 2.4833 -9.1892 16 14 -1.5368 -0.0905 -9.3362 17 1 -3.0013 0.0374 -9.1263 18 1 -1.2441 -0.0969 -10.7920 19 1 -1.0586 -1.3588 -8.7295 20 6 1.6801 2.7965 -7.7087 21 6 3.1184 2.5713 -7.2322 22 6 3.2484 3.0300 -5.7780 23 1 2.9803 4.0839 -5.7049 24 6 4.6920 2.8378 -5.3093 25 7 2.7292 3.3926 -0.6789 26 7 2.7394 3.4225 0.6084 27 7 2.2992 2.1787 1.0826 28 6 2.1571 1.7791 2.4848 29 6 0.7473 2.1199 2.9718 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8935 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.7741 3.5157 -3.2913 36 1 0.2020 1.7630 -4.7851 37 1 0.5808 3.4621 -5.1687 38 1 -0.8669 2.5680 -10.0910 39 1 1.5571 2.3810 -8.7089 40 1 1.4638 3.8647 -7.7255 41 1 3.3631 1.5114 -7.3021 42 1 3.8028 3.1450 -7.8572 43 1 4.9603 1.7839 -5.3816 44 1 5.3597 3.4270 -5.9379 45 1 4.7846 3.1660 -4.2740 46 1 2.3232 0.7057 2.5755 47 1 2.8896 2.3126 3.0906 48 1 0.0147 1.5865 2.3660 49 1 0.6413 1.8223 4.0151 50 1 0.5812 3.1934 2.8812 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968327352.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:56 Heat of formation + Delta-G solvation = 42.366149 kcal Electronic energy + Delta-G solvation = -30140.415381 eV Core-core repulsion = 26203.924627 eV Total energy + Delta-G solvation = -3936.490754 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.37091 -40.88323 -39.10013 -36.85306 -36.15587 -34.76365 -34.42474 -33.02332 -31.63384 -31.25922 -30.12224 -28.89571 -26.08909 -25.58277 -25.16090 -24.52108 -23.40511 -22.68371 -21.46265 -21.28697 -20.88136 -18.95376 -18.69284 -17.51956 -17.14740 -16.87978 -16.68960 -15.91809 -15.85172 -15.73662 -15.52703 -15.28095 -15.03119 -14.94537 -14.73570 -14.48854 -14.14894 -13.90727 -13.79082 -13.56308 -13.43548 -13.19161 -13.14630 -13.11927 -12.76731 -12.71061 -12.66291 -12.34286 -12.30877 -12.03297 -11.99587 -11.94004 -11.88615 -11.65539 -11.43672 -11.24507 -11.21498 -10.98223 -10.58942 -10.31301 -10.00410 -8.68673 -7.88865 -5.34265 0.09371 0.60424 1.06878 1.45621 1.46831 1.58282 2.10048 2.24806 2.52298 3.12172 3.25488 3.37368 3.51124 3.67238 3.74259 3.80185 3.95819 4.01538 4.10321 4.13198 4.23276 4.28227 4.41432 4.45286 4.48870 4.52980 4.65186 4.67967 4.74353 4.76764 4.86400 4.93053 4.95279 4.96746 5.03102 5.07636 5.11883 5.19062 5.21806 5.23500 5.37121 5.43691 5.46900 5.51783 5.57473 5.64191 5.77553 6.37575 6.47320 6.90057 7.13283 7.19462 7.82946 8.34213 9.17306 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015306 B = 0.003038 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.855136 B = 9215.338873 C =10461.108393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.062 4.062 3 C 0.135 3.865 4 C -0.126 4.126 5 C 0.600 3.400 6 O -0.559 6.559 7 N -0.697 5.697 8 C 0.153 3.847 9 H 0.067 0.933 10 C 0.145 3.855 11 N -0.605 5.605 12 C -0.266 4.266 13 H 0.057 0.943 14 C -0.046 4.046 15 N -0.931 5.931 16 Si 0.967 3.033 17 H -0.285 1.285 18 H -0.286 1.286 19 H -0.272 1.272 20 C 0.172 3.828 21 C -0.121 4.121 22 C -0.085 4.085 23 H 0.074 0.926 24 C -0.134 4.134 25 N -0.222 5.222 26 N -0.087 5.087 27 N -0.346 5.346 28 C 0.103 3.897 29 C -0.171 4.171 30 H 0.070 0.930 31 H 0.031 0.969 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.411 0.589 36 H 0.035 0.965 37 H 0.013 0.987 38 H 0.252 0.748 39 H 0.057 0.943 40 H 0.001 0.999 41 H 0.051 0.949 42 H 0.082 0.918 43 H 0.048 0.952 44 H 0.073 0.927 45 H 0.060 0.940 46 H 0.134 0.866 47 H 0.121 0.879 48 H 0.062 0.938 49 H 0.114 0.886 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.971 -2.577 25.629 27.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.101 4.101 3 C -0.004 4.004 4 C -0.266 4.266 5 C 0.385 3.615 6 O -0.437 6.437 7 N -0.347 5.347 8 C 0.047 3.953 9 H 0.085 0.915 10 C 0.018 3.982 11 N -0.329 5.329 12 C -0.396 4.396 13 H 0.074 0.926 14 C -0.241 4.241 15 N -0.577 5.577 16 Si 0.794 3.206 17 H -0.212 1.212 18 H -0.212 1.212 19 H -0.197 1.197 20 C 0.047 3.953 21 C -0.160 4.160 22 C -0.104 4.104 23 H 0.092 0.908 24 C -0.191 4.191 25 N -0.095 5.095 26 N -0.066 5.066 27 N -0.132 5.132 28 C -0.016 4.016 29 C -0.228 4.228 30 H 0.089 0.911 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.137 0.863 35 H 0.248 0.752 36 H 0.054 0.946 37 H 0.031 0.969 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.019 0.981 41 H 0.070 0.930 42 H 0.101 0.899 43 H 0.067 0.933 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.152 0.848 47 H 0.140 0.860 48 H 0.081 0.919 49 H 0.132 0.868 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.144 -1.913 25.735 27.378 hybrid contribution -1.061 -0.726 -0.977 1.615 sum 8.083 -2.639 24.758 26.177 Atomic orbital electron populations 1.21713 0.92782 1.03760 1.01593 1.20565 0.97419 0.85826 1.06267 1.22252 0.95226 0.96947 0.85993 1.21186 1.17076 0.93082 0.95218 1.17000 0.76871 0.84408 0.83233 1.90771 1.48002 1.20944 1.84006 1.45740 1.66440 1.17240 1.05299 1.21317 0.95906 0.98991 0.79093 0.91478 1.21200 0.94899 0.96703 0.85377 1.44224 1.37620 1.49780 1.01252 1.19424 1.17215 1.04641 0.98312 0.92560 1.25749 0.99967 0.98923 0.99505 1.70183 1.50362 1.24581 1.12560 0.85280 0.78133 0.79631 0.77531 1.21183 1.21208 1.19738 1.20718 0.86995 0.93589 0.94013 1.22066 0.97725 1.00856 0.95347 1.21236 0.95510 0.99220 0.94399 0.90773 1.21754 0.94218 1.01797 1.01378 1.74551 1.11705 1.18384 1.04898 1.81841 1.21041 1.00780 1.02964 1.50791 1.43700 1.09866 1.08803 1.22555 1.01105 1.04257 0.73665 1.22269 0.94109 1.02342 1.04121 0.91121 0.94955 0.89459 0.88580 0.86258 0.75223 0.94619 0.96902 0.93903 0.92422 0.98063 0.93049 0.89915 0.93270 0.90843 0.92118 0.84828 0.86043 0.91891 0.86755 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.89 71.98 0.71 -1.68 16 2 C -0.06 -1.05 5.63 29.85 0.17 -0.88 16 3 C 0.14 2.99 6.27 41.72 0.26 3.26 16 4 C -0.13 -3.64 6.99 40.82 0.29 -3.36 16 5 C 0.60 20.29 7.78 86.69 0.67 20.97 16 6 O -0.56 -21.66 14.38 -4.02 -0.06 -21.72 16 7 N -0.70 -22.72 4.37 -445.34 -1.94 -24.66 16 8 C 0.15 5.77 2.06 45.07 0.09 5.86 16 9 H 0.07 2.85 7.58 -2.38 -0.02 2.83 16 10 C 0.15 6.77 6.09 86.36 0.53 7.29 16 11 N -0.61 -32.35 2.99 -699.11 -2.09 -34.44 16 12 C -0.27 -15.58 9.58 84.03 0.81 -14.78 16 13 H 0.06 3.33 7.89 -2.91 -0.02 3.31 16 14 C -0.05 -2.65 4.91 84.86 0.42 -2.24 16 15 N -0.93 -56.20 11.19 21.65 0.24 -55.95 16 16 Si 0.97 46.45 29.59 68.60 2.03 48.48 16 17 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 18 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 19 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 20 C 0.17 8.49 5.31 86.36 0.46 8.95 16 21 C -0.12 -4.53 5.36 30.67 0.16 -4.36 16 22 C -0.08 -2.77 2.27 -10.77 -0.02 -2.79 16 23 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 24 C -0.13 -3.46 9.02 71.98 0.65 -2.81 16 25 N -0.22 -6.47 12.04 -50.00 -0.60 -7.07 16 26 N -0.09 -2.22 13.78 37.02 0.51 -1.71 16 27 N -0.35 -6.35 3.63 -333.78 -1.21 -7.56 16 28 C 0.10 0.75 7.02 86.38 0.61 1.36 16 29 C -0.17 -1.09 10.24 71.98 0.74 -0.35 16 30 H 0.07 0.90 6.12 -2.39 -0.01 0.89 16 31 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.10 2.17 6.42 -2.39 -0.02 2.15 16 34 H 0.12 0.98 7.18 -2.39 -0.02 0.97 16 35 H 0.41 11.89 7.99 -92.71 -0.74 11.15 16 36 H 0.04 1.78 7.93 -2.39 -0.02 1.76 16 37 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 39 H 0.06 3.20 6.04 -2.38 -0.01 3.18 16 40 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 45 H 0.06 1.45 7.36 -2.39 -0.02 1.43 16 46 H 0.13 0.17 7.16 -2.39 -0.02 0.15 16 47 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.06 0.50 6.12 -2.38 -0.01 0.48 16 49 H 0.11 0.08 8.14 -2.38 -0.02 0.06 16 50 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -75.68 395.54 3.61 -72.06 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.21 Total: 18.13 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: 6.53 Total: 14.43 kcal Atomic # 7 Polarization: -126.29 SS G_CDS: -5.10 Total: -131.39 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.06 Total: -21.72 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -75.68 3.61 -72.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968327352.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.430 kcal (2) G-P(sol) polarization free energy of solvation -75.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds