Wall clock time and date at job start Tue Mar 31 2020 18:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36597 * 126.57474 * 2 1 4 4 C 1.47524 * 125.77581 * 359.97438 * 3 2 1 5 5 O 1.21593 * 119.99812 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00205 * 180.02562 * 4 3 2 7 7 C 1.46501 * 119.99924 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.49676 * 324.93242 * 7 6 4 9 9 C 1.53200 * 109.49667 * 84.99872 * 7 6 4 10 10 N 1.46927 * 108.77158 * 174.58584 * 9 7 6 11 11 C 1.36935 * 120.62850 * 126.37049 * 10 9 7 12 12 H 1.08003 * 120.00219 * 207.69244 * 11 10 9 13 13 C 1.38810 * 120.00089 * 27.68919 * 11 10 9 14 14 N 1.31615 * 120.00084 * 17.36164 * 13 11 10 15 15 Si 1.86806 * 120.00216 * 197.36260 * 13 11 10 16 16 H 1.48501 * 109.46800 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47204 * 120.00042 * 15 13 11 18 18 H 1.48503 * 109.47089 * 240.00286 * 15 13 11 19 19 C 1.46922 * 118.74059 * 306.39170 * 10 9 7 20 20 C 1.53192 * 108.77974 * 53.60837 * 19 10 9 21 21 C 1.53035 * 109.30987 * 305.36698 * 20 19 10 22 22 H 1.08998 * 109.46333 * 301.33814 * 21 20 19 23 23 C 1.52999 * 109.46073 * 181.38308 * 21 20 19 24 24 N 1.34405 * 108.45760 * 180.23824 * 3 2 1 25 25 N 1.28762 * 109.52190 * 359.59252 * 24 3 2 26 26 N 1.34811 * 126.58580 * 179.97438 * 2 1 3 27 27 C 1.46502 * 126.58942 * 0.02562 * 26 2 1 28 28 C 1.53001 * 109.46766 * 119.99972 * 27 26 2 29 29 C 1.52998 * 109.47046 * 239.99642 * 27 26 2 30 30 H 1.09001 * 109.47062 * 89.97583 * 1 2 3 31 31 H 1.09001 * 109.47013 * 209.97374 * 1 2 3 32 32 H 1.09000 * 109.47216 * 329.97221 * 1 2 3 33 33 H 0.96999 * 120.00065 * 359.97438 * 6 4 3 34 34 H 1.08996 * 109.58394 * 54.79834 * 9 7 6 35 35 H 1.08996 * 109.58464 * 294.37011 * 9 7 6 36 36 H 0.97003 * 120.00512 * 179.97438 * 14 13 11 37 37 H 1.09004 * 109.58499 * 293.82113 * 19 10 9 38 38 H 1.08999 * 109.70327 * 173.46832 * 19 10 9 39 39 H 1.09000 * 109.49316 * 65.31666 * 20 19 10 40 40 H 1.09000 * 109.49705 * 185.41411 * 20 19 10 41 41 H 1.08997 * 109.47259 * 59.99460 * 23 21 20 42 42 H 1.08997 * 109.47742 * 180.02562 * 23 21 20 43 43 H 1.09010 * 109.47168 * 300.00065 * 23 21 20 44 44 H 1.08997 * 109.47525 * 359.97438 * 27 26 2 45 45 H 1.09000 * 109.47219 * 60.00175 * 28 27 26 46 46 H 1.09007 * 109.46975 * 180.02562 * 28 27 26 47 47 H 1.09001 * 109.47509 * 299.99200 * 28 27 26 48 48 H 1.08998 * 109.47044 * 60.00370 * 29 27 26 49 49 H 1.08997 * 109.47332 * 179.97438 * 29 27 26 50 50 H 1.08997 * 109.47087 * 300.00425 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8737 2.5028 -0.0005 5 8 0.6859 2.7628 -0.0015 6 7 2.7816 3.4988 -0.0010 7 6 2.3373 4.8949 -0.0021 8 1 1.4257 4.9861 -0.5927 9 6 2.0619 5.3449 1.4362 10 7 1.7442 6.7794 1.4301 11 6 0.5922 7.2413 2.0088 12 1 0.1331 8.1498 1.6478 13 6 0.0145 6.5418 3.0594 14 7 0.7199 5.6510 3.7236 15 14 -1.7640 6.8648 3.5306 16 1 -2.3319 7.9053 2.6361 17 1 -2.5481 5.6113 3.3929 18 1 -1.8257 7.3352 4.9378 19 6 2.6855 7.7088 0.7908 20 6 2.9540 7.2323 -0.6401 21 6 3.4302 5.7783 -0.6083 22 1 4.3337 5.7051 -0.0030 23 6 3.7324 5.3096 -2.0331 24 7 3.5984 0.6790 -0.0053 25 7 3.6300 -0.6082 0.0000 26 7 2.3105 -1.0825 0.0005 27 6 1.8865 -2.4848 0.0006 28 6 2.4297 -3.1819 -1.2484 29 6 2.4289 -3.1815 1.2501 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3633 0.8897 0.5143 33 1 3.7291 3.2914 -0.0006 34 1 2.9455 5.1690 2.0496 35 1 1.2176 4.7854 1.8388 36 1 0.3163 5.1624 4.4581 37 1 3.6200 7.7257 1.3517 38 1 2.2551 8.7099 0.7679 39 1 2.0368 7.3021 -1.2248 40 1 3.7235 7.8573 -1.0934 41 1 4.5115 5.9378 -2.4647 42 1 4.0711 4.2738 -2.0108 43 1 2.8292 5.3831 -2.6390 44 1 0.7977 -2.5352 0.0007 45 1 3.5186 -3.1316 -1.2480 46 1 2.1139 -4.2252 -1.2486 47 1 2.0433 -2.6856 -2.1386 48 1 2.0419 -2.6849 2.1398 49 1 2.1130 -4.2247 1.2504 50 1 3.5177 -3.1311 1.2504 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968483043.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:45 Heat of formation + Delta-G solvation = 65.894605 kcal Electronic energy + Delta-G solvation = -30235.874897 eV Core-core repulsion = 26300.404413 eV Total energy + Delta-G solvation = -3935.470484 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.24877 -39.29851 -37.46767 -36.58295 -34.30431 -33.24030 -32.81303 -31.10828 -30.84424 -28.95999 -27.79781 -27.70302 -27.13524 -24.09285 -24.04449 -23.33502 -21.67128 -20.90996 -20.43462 -19.73951 -19.22180 -17.57259 -16.74045 -16.43291 -16.17411 -15.43532 -14.91243 -14.78218 -14.25026 -14.19721 -13.91661 -13.67920 -13.60484 -13.41357 -13.30176 -13.19431 -13.11055 -12.89514 -12.71561 -12.57528 -12.33773 -12.01579 -11.96521 -11.88887 -11.61478 -11.56110 -11.50388 -11.06477 -10.85358 -10.67442 -10.56021 -10.36114 -10.22604 -10.08421 -9.91963 -9.83995 -9.47802 -9.38413 -9.04741 -8.39994 -8.36593 -6.59226 -5.69654 -3.12582 1.16127 1.90683 1.92706 3.44719 3.52502 3.54427 3.57061 3.70929 4.00885 4.19651 4.34796 4.46679 4.57801 4.61582 4.85643 4.94871 5.04685 5.14312 5.22958 5.26717 5.30615 5.35789 5.40211 5.47509 5.54679 5.60894 5.65483 5.66675 5.71705 5.86229 6.00118 6.04789 6.11958 6.12946 6.20595 6.33754 6.43486 6.48203 6.54329 6.62701 6.81874 6.83621 7.04368 7.05179 7.38012 7.80333 7.87857 7.91243 8.14997 8.53687 8.70026 9.28882 9.93194 10.48405 11.38138 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012561 B = 0.003461 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.517783 B = 8087.211015 C = 9649.199470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.120 3.880 3 C -0.097 4.097 4 C 0.600 3.400 5 O -0.531 6.531 6 N -0.702 5.702 7 C 0.125 3.875 8 H 0.083 0.917 9 C 0.166 3.834 10 N -0.588 5.588 11 C -0.254 4.254 12 H 0.066 0.934 13 C 0.006 3.994 14 N -0.898 5.898 15 Si 0.900 3.100 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.292 1.292 19 C 0.142 3.858 20 C -0.125 4.125 21 C -0.092 4.092 22 H 0.067 0.933 23 C -0.144 4.144 24 N -0.205 5.205 25 N -0.071 5.071 26 N -0.360 5.360 27 C 0.144 3.856 28 C -0.161 4.161 29 C -0.163 4.163 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.116 0.884 33 H 0.400 0.600 34 H 0.017 0.983 35 H 0.096 0.904 36 H 0.252 0.748 37 H 0.018 0.982 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.109 0.891 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.063 0.937 48 H 0.065 0.935 49 H 0.081 0.919 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.783 -17.120 -10.545 20.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.017 4.017 3 C -0.237 4.237 4 C 0.383 3.617 5 O -0.407 6.407 6 N -0.351 5.351 7 C 0.020 3.980 8 H 0.102 0.898 9 C 0.039 3.961 10 N -0.311 5.311 11 C -0.383 4.383 12 H 0.084 0.916 13 C -0.193 4.193 14 N -0.542 5.542 15 Si 0.730 3.270 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.219 1.219 19 C 0.016 3.984 20 C -0.164 4.164 21 C -0.111 4.111 22 H 0.086 0.914 23 C -0.202 4.202 24 N -0.078 5.078 25 N -0.051 5.051 26 N -0.147 5.147 27 C 0.043 3.957 28 C -0.219 4.219 29 C -0.221 4.221 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.135 0.865 33 H 0.234 0.766 34 H 0.035 0.965 35 H 0.114 0.886 36 H 0.062 0.938 37 H 0.036 0.964 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.126 0.874 45 H 0.093 0.907 46 H 0.100 0.900 47 H 0.082 0.918 48 H 0.084 0.916 49 H 0.100 0.900 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.348 -17.413 -10.395 20.740 hybrid contribution -1.323 -0.024 0.374 1.375 sum 3.025 -17.436 -10.020 20.337 Atomic orbital electron populations 1.20734 0.84843 1.05507 1.04449 1.21922 0.96225 0.86353 0.97209 1.21409 0.88827 0.95796 1.17646 1.16667 0.85856 0.82245 0.76897 1.90794 1.15808 1.83297 1.50785 1.45831 1.09429 1.06347 1.73486 1.22026 0.96838 0.77455 1.01652 0.89850 1.21109 1.00588 0.85209 0.89148 1.43969 1.21242 1.00689 1.65200 1.19183 0.99259 1.09531 1.10337 0.91596 1.25022 0.98708 0.99861 0.95741 1.70037 1.34581 1.28352 1.21259 0.86255 0.85375 0.77625 0.77709 1.20228 1.21486 1.21865 1.20959 0.93111 0.93829 0.90549 1.22064 1.00223 0.94232 0.99915 1.21302 0.98239 0.95928 0.95681 0.91416 1.21851 1.00987 1.00537 0.96808 1.74590 1.19242 1.04077 1.09923 1.81859 0.96361 1.03400 1.23442 1.50569 1.06352 1.07066 1.50762 1.21603 1.00465 0.75492 0.98171 1.22147 1.03162 1.00750 0.95865 1.22160 1.03211 1.00766 0.95974 0.89224 0.91009 0.86538 0.76616 0.96461 0.88636 0.93789 0.96433 0.92654 0.92112 0.92640 0.93175 0.93064 0.93014 0.87358 0.90728 0.90038 0.91770 0.91609 0.90037 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 9.41 36.01 0.34 -0.72 16 2 C 0.12 1.63 7.02 -81.88 -0.57 1.06 16 3 C -0.10 -1.60 6.99 -83.55 -0.58 -2.19 16 4 C 0.60 11.37 7.78 -12.48 -0.10 11.27 16 5 O -0.53 -11.46 14.38 5.28 0.08 -11.38 16 6 N -0.70 -12.72 4.37 -54.73 -0.24 -12.96 16 7 C 0.13 2.52 2.06 -67.80 -0.14 2.38 16 8 H 0.08 1.87 7.58 -51.93 -0.39 1.47 16 9 C 0.17 4.14 4.89 -3.71 -0.02 4.13 16 10 N -0.59 -15.12 2.99 -172.32 -0.52 -15.64 16 11 C -0.25 -7.16 9.59 -15.06 -0.14 -7.30 16 12 H 0.07 1.82 7.89 -52.48 -0.41 1.41 16 13 C 0.01 0.16 4.91 -17.43 -0.09 0.07 16 14 N -0.90 -27.02 11.19 55.49 0.62 -26.40 16 15 Si 0.90 22.51 29.59 -169.99 -5.03 17.48 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 17 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 19 C 0.14 3.00 6.51 -3.71 -0.02 2.97 16 20 C -0.12 -2.16 5.36 -26.61 -0.14 -2.31 16 21 C -0.09 -1.56 2.27 -90.58 -0.21 -1.76 16 22 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 23 C -0.14 -2.04 9.02 37.16 0.34 -1.70 16 24 N -0.21 -3.33 12.04 32.85 0.40 -2.94 16 25 N -0.07 -1.04 13.67 60.35 0.82 -0.21 16 26 N -0.36 -4.25 3.28 -50.41 -0.17 -4.42 16 27 C 0.14 1.06 3.68 -67.93 -0.25 0.81 16 28 C -0.16 -0.97 9.47 37.16 0.35 -0.62 16 29 C -0.16 -1.07 9.47 37.16 0.35 -0.72 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.56 7.18 -51.93 -0.37 0.18 16 32 H 0.12 1.62 6.43 -51.93 -0.33 1.29 16 33 H 0.40 6.51 7.99 -40.82 -0.33 6.19 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.10 2.77 6.03 -51.93 -0.31 2.46 16 36 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.05 1.14 7.94 -51.93 -0.41 0.73 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.70 7.35 -51.93 -0.38 0.32 16 43 H 0.05 0.75 8.14 -51.92 -0.42 0.32 16 44 H 0.11 0.57 6.79 -51.93 -0.35 0.21 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.29 8.14 -51.92 -0.42 -0.13 16 47 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 398.73 15.07 6.01 6.01 Total: -1.00 -33.83 398.73 -7.27 -41.10 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -8.35 Total: 4.00 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -0.89 Total: 5.37 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: 0.92 Total: -62.57 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.08 Total: -11.38 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.03 Total: 17.48 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.83 -7.27 -41.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968483043.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.994 kcal (2) G-P(sol) polarization free energy of solvation -33.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds