Wall clock time and date at job start Tue Mar 31 2020 18:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36597 * 126.57474 * 2 1 4 4 C 1.47524 * 125.77581 * 359.97438 * 3 2 1 5 5 O 1.21593 * 119.99812 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00205 * 180.02562 * 4 3 2 7 7 C 1.46501 * 119.99924 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.49676 * 324.93242 * 7 6 4 9 9 C 1.53200 * 109.49667 * 84.99872 * 7 6 4 10 10 N 1.46927 * 108.77158 * 174.58584 * 9 7 6 11 11 C 1.36935 * 120.62850 * 126.37049 * 10 9 7 12 12 H 1.08003 * 120.00219 * 207.69244 * 11 10 9 13 13 C 1.38810 * 120.00089 * 27.68919 * 11 10 9 14 14 N 1.31615 * 120.00084 * 17.36164 * 13 11 10 15 15 Si 1.86806 * 120.00216 * 197.36260 * 13 11 10 16 16 H 1.48501 * 109.46800 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47204 * 120.00042 * 15 13 11 18 18 H 1.48503 * 109.47089 * 240.00286 * 15 13 11 19 19 C 1.46922 * 118.74059 * 306.39170 * 10 9 7 20 20 C 1.53192 * 108.77974 * 53.60837 * 19 10 9 21 21 C 1.53035 * 109.30987 * 305.36698 * 20 19 10 22 22 H 1.08998 * 109.46333 * 301.33814 * 21 20 19 23 23 C 1.52999 * 109.46073 * 181.38308 * 21 20 19 24 24 N 1.34405 * 108.45760 * 180.23824 * 3 2 1 25 25 N 1.28762 * 109.52190 * 359.59252 * 24 3 2 26 26 N 1.34811 * 126.58580 * 179.97438 * 2 1 3 27 27 C 1.46502 * 126.58942 * 0.02562 * 26 2 1 28 28 C 1.53001 * 109.46766 * 119.99972 * 27 26 2 29 29 C 1.52998 * 109.47046 * 239.99642 * 27 26 2 30 30 H 1.09001 * 109.47062 * 89.97583 * 1 2 3 31 31 H 1.09001 * 109.47013 * 209.97374 * 1 2 3 32 32 H 1.09000 * 109.47216 * 329.97221 * 1 2 3 33 33 H 0.96999 * 120.00065 * 359.97438 * 6 4 3 34 34 H 1.08996 * 109.58394 * 54.79834 * 9 7 6 35 35 H 1.08996 * 109.58464 * 294.37011 * 9 7 6 36 36 H 0.97003 * 120.00512 * 179.97438 * 14 13 11 37 37 H 1.09004 * 109.58499 * 293.82113 * 19 10 9 38 38 H 1.08999 * 109.70327 * 173.46832 * 19 10 9 39 39 H 1.09000 * 109.49316 * 65.31666 * 20 19 10 40 40 H 1.09000 * 109.49705 * 185.41411 * 20 19 10 41 41 H 1.08997 * 109.47259 * 59.99460 * 23 21 20 42 42 H 1.08997 * 109.47742 * 180.02562 * 23 21 20 43 43 H 1.09010 * 109.47168 * 300.00065 * 23 21 20 44 44 H 1.08997 * 109.47525 * 359.97438 * 27 26 2 45 45 H 1.09000 * 109.47219 * 60.00175 * 28 27 26 46 46 H 1.09007 * 109.46975 * 180.02562 * 28 27 26 47 47 H 1.09001 * 109.47509 * 299.99200 * 28 27 26 48 48 H 1.08998 * 109.47044 * 60.00370 * 29 27 26 49 49 H 1.08997 * 109.47332 * 179.97438 * 29 27 26 50 50 H 1.08997 * 109.47087 * 300.00425 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8737 2.5028 -0.0005 5 8 0.6859 2.7628 -0.0015 6 7 2.7816 3.4988 -0.0010 7 6 2.3373 4.8949 -0.0021 8 1 1.4257 4.9861 -0.5927 9 6 2.0619 5.3449 1.4362 10 7 1.7442 6.7794 1.4301 11 6 0.5922 7.2413 2.0088 12 1 0.1331 8.1498 1.6478 13 6 0.0145 6.5418 3.0594 14 7 0.7199 5.6510 3.7236 15 14 -1.7640 6.8648 3.5306 16 1 -2.3319 7.9053 2.6361 17 1 -2.5481 5.6113 3.3929 18 1 -1.8257 7.3352 4.9378 19 6 2.6855 7.7088 0.7908 20 6 2.9540 7.2323 -0.6401 21 6 3.4302 5.7783 -0.6083 22 1 4.3337 5.7051 -0.0030 23 6 3.7324 5.3096 -2.0331 24 7 3.5984 0.6790 -0.0053 25 7 3.6300 -0.6082 0.0000 26 7 2.3105 -1.0825 0.0005 27 6 1.8865 -2.4848 0.0006 28 6 2.4297 -3.1819 -1.2484 29 6 2.4289 -3.1815 1.2501 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3633 0.8897 0.5143 33 1 3.7291 3.2914 -0.0006 34 1 2.9455 5.1690 2.0496 35 1 1.2176 4.7854 1.8388 36 1 0.3163 5.1624 4.4581 37 1 3.6200 7.7257 1.3517 38 1 2.2551 8.7099 0.7679 39 1 2.0368 7.3021 -1.2248 40 1 3.7235 7.8573 -1.0934 41 1 4.5115 5.9378 -2.4647 42 1 4.0711 4.2738 -2.0108 43 1 2.8292 5.3831 -2.6390 44 1 0.7977 -2.5352 0.0007 45 1 3.5186 -3.1316 -1.2480 46 1 2.1139 -4.2252 -1.2486 47 1 2.0433 -2.6856 -2.1386 48 1 2.0419 -2.6849 2.1398 49 1 2.1130 -4.2247 1.2504 50 1 3.5177 -3.1311 1.2504 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968483043.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:44 Heat of formation + Delta-G solvation = 42.870415 kcal Electronic energy + Delta-G solvation = -30236.873301 eV Core-core repulsion = 26300.404413 eV Total energy + Delta-G solvation = -3936.468888 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.35312 -40.85031 -39.08121 -37.37717 -36.09519 -34.72254 -33.97574 -32.83276 -32.10142 -30.50296 -29.07002 -28.61222 -28.28428 -25.92785 -25.06729 -24.69104 -23.12997 -22.58334 -21.56891 -21.10789 -20.66347 -18.78288 -18.64712 -17.52758 -17.26109 -17.03373 -16.73297 -15.77466 -15.74155 -15.45726 -15.29023 -15.24464 -15.05768 -14.89622 -14.46862 -14.21482 -14.10336 -14.02601 -14.00824 -13.55082 -13.28876 -13.22884 -13.19781 -13.04641 -13.00250 -12.74334 -12.55984 -12.54337 -12.43875 -12.30887 -12.13529 -11.95460 -11.88264 -11.62623 -11.47179 -11.19276 -11.15521 -10.96941 -10.54385 -10.29253 -9.96841 -8.68173 -7.86825 -5.33003 0.09718 0.62048 1.02661 1.43075 1.46525 1.56192 2.13016 2.29363 2.51566 3.13882 3.27429 3.31484 3.53089 3.68303 3.80053 3.80367 3.85230 3.96709 4.01121 4.09827 4.17895 4.48417 4.51536 4.55735 4.59946 4.62543 4.63375 4.66763 4.68169 4.74460 4.74992 4.84879 4.93134 4.99234 5.08469 5.13936 5.17296 5.18456 5.21398 5.22482 5.30201 5.44700 5.46335 5.54661 5.56199 5.63775 5.79430 6.37131 6.51057 6.91092 7.12475 7.23495 7.85965 8.36360 9.18362 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012561 B = 0.003461 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.517783 B = 8087.211015 C = 9649.199470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.128 3.872 3 C -0.128 4.128 4 C 0.597 3.403 5 O -0.565 6.565 6 N -0.696 5.696 7 C 0.143 3.857 8 H 0.059 0.941 9 C 0.180 3.820 10 N -0.608 5.608 11 C -0.262 4.262 12 H 0.070 0.930 13 C -0.051 4.051 14 N -0.932 5.932 15 Si 0.964 3.036 16 H -0.263 1.263 17 H -0.295 1.295 18 H -0.288 1.288 19 C 0.135 3.865 20 C -0.113 4.113 21 C -0.087 4.087 22 H 0.073 0.927 23 C -0.134 4.134 24 N -0.222 5.222 25 N -0.081 5.081 26 N -0.344 5.344 27 C 0.130 3.870 28 C -0.157 4.157 29 C -0.160 4.160 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.083 0.917 33 H 0.409 0.591 34 H -0.008 1.008 35 H 0.048 0.952 36 H 0.246 0.754 37 H 0.018 0.982 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.047 0.953 44 H 0.139 0.861 45 H 0.058 0.942 46 H 0.114 0.886 47 H 0.059 0.941 48 H 0.053 0.947 49 H 0.115 0.885 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.766 -18.543 -12.414 22.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.010 4.010 3 C -0.268 4.268 4 C 0.382 3.618 5 O -0.443 6.443 6 N -0.346 5.346 7 C 0.037 3.963 8 H 0.078 0.922 9 C 0.053 3.947 10 N -0.332 5.332 11 C -0.392 4.392 12 H 0.088 0.912 13 C -0.247 4.247 14 N -0.578 5.578 15 Si 0.792 3.208 16 H -0.187 1.187 17 H -0.222 1.222 18 H -0.215 1.215 19 C 0.010 3.990 20 C -0.153 4.153 21 C -0.106 4.106 22 H 0.091 0.909 23 C -0.191 4.191 24 N -0.095 5.095 25 N -0.060 5.060 26 N -0.131 5.131 27 C 0.031 3.969 28 C -0.214 4.214 29 C -0.218 4.218 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.102 0.898 33 H 0.246 0.754 34 H 0.011 0.989 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.036 0.964 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.114 0.886 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.157 0.843 45 H 0.077 0.923 46 H 0.132 0.868 47 H 0.078 0.922 48 H 0.072 0.928 49 H 0.134 0.866 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.377 -18.845 -12.294 22.922 hybrid contribution -1.297 0.323 0.980 1.657 sum 3.080 -18.521 -11.314 21.921 Atomic orbital electron populations 1.20796 0.82929 1.05774 1.05704 1.22246 0.97287 0.86023 0.95494 1.21192 0.89856 0.95139 1.20595 1.17046 0.85432 0.83420 0.75886 1.90768 1.17153 1.84106 1.52302 1.45715 1.09939 1.05595 1.73315 1.21576 0.97601 0.79138 0.98017 0.92234 1.20772 0.97343 0.84916 0.91646 1.44246 1.21770 1.01620 1.65545 1.19544 1.00319 1.09429 1.09953 0.91235 1.25814 1.02494 1.00188 0.96183 1.70203 1.36058 1.29675 1.21879 0.85260 0.80645 0.77357 0.77570 1.18667 1.22177 1.21519 1.21180 0.92012 0.93293 0.92516 1.21954 1.01346 0.94895 0.97069 1.21276 0.96794 0.94943 0.97580 0.90869 1.21755 1.01744 1.01285 0.94358 1.74550 1.19344 1.04922 1.10723 1.81754 0.98039 1.02748 1.23461 1.50931 1.05055 1.08380 1.48758 1.22232 1.02414 0.73010 0.99284 1.22152 1.02109 1.02433 0.94739 1.22177 1.02158 1.02540 0.94926 0.87331 0.87114 0.89791 0.75443 0.98949 0.93374 0.94457 0.96396 0.92311 0.92656 0.88581 0.90318 0.92697 0.93345 0.84299 0.92252 0.86758 0.92223 0.92792 0.86648 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.95 9.41 71.24 0.67 -1.28 16 2 C 0.13 3.42 7.02 41.72 0.29 3.71 16 3 C -0.13 -4.33 6.99 40.82 0.29 -4.05 16 4 C 0.60 23.70 7.78 86.69 0.67 24.38 16 5 O -0.56 -25.79 14.38 -4.01 -0.06 -25.85 16 6 N -0.70 -26.20 4.37 -445.32 -1.94 -28.14 16 7 C 0.14 5.91 2.06 45.07 0.09 6.01 16 8 H 0.06 2.77 7.58 -2.39 -0.02 2.75 16 9 C 0.18 9.47 4.89 86.36 0.42 9.89 16 10 N -0.61 -32.22 2.99 -699.10 -2.09 -34.31 16 11 C -0.26 -15.21 9.59 84.03 0.81 -14.40 16 12 H 0.07 3.89 7.89 -2.91 -0.02 3.87 16 13 C -0.05 -3.05 4.91 84.86 0.42 -2.64 16 14 N -0.93 -58.81 11.19 21.65 0.24 -58.57 16 15 Si 0.96 47.62 29.59 68.60 2.03 49.65 16 16 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 17 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 18 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 19 C 0.13 5.66 6.51 86.36 0.56 6.23 16 20 C -0.11 -3.72 5.36 30.67 0.16 -3.56 16 21 C -0.09 -2.83 2.27 -10.77 -0.02 -2.85 16 22 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 23 C -0.13 -3.45 9.02 71.98 0.65 -2.80 16 24 N -0.22 -7.33 12.04 -49.99 -0.60 -7.93 16 25 N -0.08 -2.32 13.67 37.02 0.51 -1.81 16 26 N -0.34 -7.69 3.28 -313.39 -1.03 -8.72 16 27 C 0.13 1.54 3.68 44.99 0.17 1.71 16 28 C -0.16 -1.44 9.47 71.98 0.68 -0.76 16 29 C -0.16 -1.72 9.47 71.98 0.68 -1.04 16 30 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.11 1.38 7.18 -2.39 -0.02 1.37 16 32 H 0.08 2.41 6.43 -2.39 -0.02 2.39 16 33 H 0.41 13.68 7.99 -92.71 -0.74 12.94 16 34 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 35 H 0.05 2.98 6.03 -2.39 -0.01 2.97 16 36 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 37 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.06 2.38 7.94 -2.39 -0.02 2.37 16 39 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.05 1.38 7.35 -2.39 -0.02 1.37 16 43 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 44 H 0.14 0.86 6.79 -2.39 -0.02 0.84 16 45 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.11 0.33 8.14 -2.38 -0.02 0.31 16 47 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 50 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -79.28 398.73 3.79 -75.49 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 0.20 Total: 21.65 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: 6.54 Total: 18.55 kcal Atomic # 7 Polarization: -134.56 SS G_CDS: -4.92 Total: -139.48 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.06 Total: -25.85 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -79.28 3.79 -75.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968483043.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.362 kcal (2) G-P(sol) polarization free energy of solvation -79.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds