Wall clock time and date at job start Tue Mar 31 2020 20:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53008 * 109.47272 * 2 1 4 4 C 1.53005 * 109.47469 * 119.99675 * 2 1 3 5 5 C 1.52998 * 109.47500 * 175.00117 * 4 2 1 6 6 N 1.46493 * 109.47019 * 180.02562 * 5 4 2 7 7 C 1.34818 * 126.59684 * 125.27688 * 6 5 4 8 8 C 1.36592 * 106.84171 * 180.10714 * 7 6 5 9 9 C 1.47528 * 125.77017 * 179.89950 * 8 7 6 10 10 O 1.21592 * 119.99995 * 359.71538 * 9 8 7 11 11 N 1.34779 * 119.99782 * 179.71467 * 9 8 7 12 12 C 1.47016 * 125.64936 * 359.96968 * 11 9 8 13 13 C 1.54322 * 107.40306 * 178.90088 * 12 11 9 14 14 C 1.55406 * 102.82565 * 337.98212 * 13 12 11 15 15 H 1.09003 * 110.91694 * 277.24643 * 14 13 12 16 16 N 1.46502 * 111.03833 * 153.47611 * 14 13 12 17 17 C 1.46503 * 119.99548 * 306.22052 * 16 14 13 18 18 C 1.36930 * 120.00260 * 126.22461 * 16 14 13 19 19 H 1.07999 * 120.00022 * 23.31401 * 18 16 14 20 20 C 1.38813 * 120.00031 * 203.30796 * 18 16 14 21 21 N 1.31621 * 120.00090 * 14.01223 * 20 18 16 22 22 Si 1.86801 * 120.00102 * 194.01666 * 20 18 16 23 23 H 1.48500 * 109.47202 * 60.00143 * 22 20 18 24 24 H 1.48501 * 109.47216 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46945 * 300.00167 * 22 20 18 26 26 C 1.47425 * 125.64538 * 180.02562 * 11 9 8 27 27 N 1.34399 * 108.46016 * 359.62889 * 8 7 6 28 28 N 1.28764 * 109.51956 * 0.23296 * 27 8 7 29 29 H 1.08999 * 109.47736 * 299.99760 * 1 2 3 30 30 H 1.09002 * 109.47175 * 60.00234 * 1 2 3 31 31 H 1.09002 * 109.47029 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47736 * 240.00240 * 2 1 3 33 33 H 1.08994 * 109.47182 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.46830 * 299.99978 * 3 2 1 35 35 H 1.08999 * 109.46544 * 59.99509 * 3 2 1 36 36 H 1.09006 * 109.46380 * 54.99939 * 4 2 1 37 37 H 1.09001 * 109.47127 * 295.00544 * 4 2 1 38 38 H 1.09007 * 109.46843 * 60.00023 * 5 4 2 39 39 H 1.09001 * 109.47279 * 300.00334 * 5 4 2 40 40 H 1.08001 * 126.57559 * 359.96617 * 7 6 5 41 41 H 1.08998 * 109.88563 * 298.39584 * 12 11 9 42 42 H 1.09005 * 109.88297 * 59.40498 * 12 11 9 43 43 H 1.09005 * 110.72235 * 96.24803 * 13 12 11 44 44 H 1.09000 * 110.72337 * 219.52660 * 13 12 11 45 45 H 1.08997 * 109.46988 * 95.17315 * 17 16 14 46 46 H 1.08993 * 109.47188 * 215.17191 * 17 16 14 47 47 H 1.09002 * 109.47224 * 335.17562 * 17 16 14 48 48 H 0.97000 * 120.00341 * 179.97438 * 21 20 18 49 49 H 1.09004 * 110.36595 * 322.92783 * 26 11 9 50 50 H 1.09003 * 110.36567 * 85.25183 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1881 6 7 4.0530 -1.5220 2.3839 7 6 4.8354 -2.6195 2.4149 8 6 5.0424 -2.9209 3.7310 9 6 5.8423 -4.0506 4.2415 10 8 6.3823 -4.8136 3.4639 11 7 5.9744 -4.2368 5.5698 12 6 5.3787 -3.3938 6.6166 13 6 5.7741 -4.0012 7.9790 14 6 6.1037 -5.4761 7.6165 15 1 5.1957 -6.0771 7.5681 16 7 7.0599 -6.0501 8.5666 17 6 8.3309 -5.3699 8.8277 18 6 6.7657 -7.2222 9.2103 19 1 6.0543 -7.9112 8.7794 20 6 7.3819 -7.5251 10.4168 21 7 8.0275 -6.5888 11.0793 22 14 7.2950 -9.2615 11.0999 23 1 7.9138 -10.2049 10.1343 24 1 8.0268 -9.3229 12.3907 25 1 5.8750 -9.6371 11.3181 26 6 6.7413 -5.3188 6.2135 27 7 4.3991 -2.0110 4.4822 28 7 3.8013 -1.1658 3.7164 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6765 1.9563 0.8900 36 1 1.6053 -1.7198 1.2952 37 1 1.7516 -0.1583 2.1370 38 1 3.9994 0.1677 1.1421 39 1 3.8532 -1.3939 0.3003 40 1 5.2222 -3.1583 1.5626 41 1 5.7641 -2.3773 6.5381 42 1 4.2934 -3.3874 6.5145 43 1 6.6523 -3.4989 8.3850 44 1 4.9411 -3.9509 8.6802 45 1 8.2313 -4.7406 9.7120 46 1 9.1120 -6.1113 8.9955 47 1 8.5951 -4.7516 7.9697 48 1 8.4578 -6.8003 11.9225 49 1 6.6418 -6.2440 5.6458 50 1 7.7909 -5.0386 6.3030 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972318404.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:46 Heat of formation + Delta-G solvation = 81.055059 kcal Electronic energy + Delta-G solvation = -28655.773034 eV Core-core repulsion = 24720.959957 eV Total energy + Delta-G solvation = -3934.813077 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -42.33288 -39.46752 -37.74851 -37.27611 -34.83217 -34.45960 -31.68670 -31.10920 -29.96085 -29.50884 -27.77819 -27.72554 -26.00546 -25.01946 -24.39430 -22.61362 -22.15333 -21.82274 -20.59652 -19.50061 -19.20826 -17.58658 -16.99044 -16.62953 -16.33384 -15.91071 -15.48185 -15.32704 -14.89588 -14.61493 -14.54838 -14.25951 -13.97750 -13.50277 -13.29184 -13.22015 -12.90788 -12.75756 -12.56399 -12.42219 -12.35260 -12.26934 -11.98935 -11.81815 -11.66073 -11.49591 -11.36265 -11.21815 -11.02921 -10.88554 -10.68610 -10.47499 -10.45048 -10.41039 -10.19346 -9.93758 -9.82519 -9.73143 -9.39164 -8.54943 -8.24528 -6.75198 -5.72179 -3.19378 0.98903 1.71574 1.79754 3.20267 3.40956 3.41546 3.46437 3.48131 3.85892 4.08362 4.13139 4.29395 4.35297 4.50413 4.57600 4.60345 4.72994 4.81957 5.01079 5.03690 5.10187 5.17944 5.23832 5.30522 5.34497 5.38151 5.39305 5.53488 5.56075 5.62700 5.71125 5.73090 5.76224 5.78855 5.92158 6.05975 6.15436 6.22431 6.39516 6.52356 6.64970 6.72673 6.83378 6.97301 7.37502 7.73552 7.76987 7.82018 7.86077 8.33569 8.40449 9.23018 9.85626 10.34781 11.32330 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.031244 B = 0.001890 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.960987 B =14810.581321 C =14881.777249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.154 4.154 4 C -0.130 4.130 5 C 0.120 3.880 6 N -0.363 5.363 7 C 0.088 3.912 8 C -0.091 4.091 9 C 0.611 3.389 10 O -0.549 6.549 11 N -0.596 5.596 12 C 0.112 3.888 13 C -0.152 4.152 14 C 0.173 3.827 15 H 0.078 0.922 16 N -0.584 5.584 17 C 0.159 3.841 18 C -0.260 4.260 19 H 0.069 0.931 20 C 0.005 3.995 21 N -0.904 5.904 22 Si 0.906 3.094 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.087 3.913 27 N -0.198 5.198 28 N -0.068 5.068 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.203 0.797 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.034 0.966 46 H 0.041 0.959 47 H 0.002 0.998 48 H 0.253 0.747 49 H 0.074 0.926 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.680 15.856 -23.326 30.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.211 4.211 4 C -0.168 4.168 5 C -0.001 4.001 6 N -0.148 5.148 7 C -0.068 4.068 8 C -0.230 4.230 9 C 0.397 3.603 10 O -0.427 6.427 11 N -0.327 5.327 12 C -0.011 4.011 13 C -0.193 4.193 14 C 0.062 3.938 15 H 0.097 0.903 16 N -0.305 5.305 17 C 0.014 3.986 18 C -0.389 4.389 19 H 0.087 0.913 20 C -0.194 4.194 21 N -0.549 5.549 22 Si 0.736 3.264 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.209 1.209 26 C -0.038 4.038 27 N -0.072 5.072 28 N -0.049 5.049 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.220 0.780 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.052 0.948 46 H 0.059 0.941 47 H 0.021 0.979 48 H 0.063 0.937 49 H 0.092 0.908 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.988 16.445 -22.697 30.484 hybrid contribution 0.453 -1.379 -0.316 1.486 sum -11.535 15.066 -23.013 29.826 Atomic orbital electron populations 1.21825 0.94458 1.02081 1.02182 1.21063 0.96504 0.96398 0.97217 1.21957 1.01021 0.95761 1.02393 1.21983 0.92429 1.02377 0.99991 1.22172 0.96518 0.98533 0.82860 1.50545 1.34813 1.20417 1.08995 1.23345 0.93982 0.89469 1.00041 1.21494 1.09250 1.01869 0.90373 1.16361 0.79964 0.82700 0.81303 1.90790 1.49698 1.46411 1.55826 1.48233 1.50109 1.30070 1.04306 1.22097 0.98116 0.93911 0.86990 1.23296 1.02262 0.99108 0.94586 1.21465 0.92822 0.92015 0.87476 0.90348 1.43802 1.14833 1.25148 1.46695 1.20811 0.86867 0.95562 0.95339 1.19174 1.24580 0.94313 1.00874 0.91297 1.25022 1.00783 0.97793 0.95797 1.70061 1.38696 1.30924 1.15189 0.86316 0.77674 0.84423 0.77990 1.21025 1.21661 1.20907 1.23062 0.95928 0.89141 0.95621 1.74794 1.05283 1.00852 1.26259 1.81975 1.21023 1.19288 0.82579 0.92350 0.92340 0.92507 0.90782 0.92510 0.92345 0.92182 0.90887 0.89824 0.88244 0.87841 0.78021 0.91570 0.91263 0.90640 0.90486 0.94760 0.94059 0.97908 0.93651 0.90760 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.19 37.15 0.34 -0.24 16 2 C -0.09 -0.33 2.92 -90.62 -0.26 -0.59 16 3 C -0.15 -0.53 8.95 37.16 0.33 -0.19 16 4 C -0.13 -0.64 4.89 -26.73 -0.13 -0.77 16 5 C 0.12 0.59 6.30 -4.05 -0.03 0.56 16 6 N -0.36 -3.37 3.69 -61.06 -0.23 -3.60 16 7 C 0.09 0.92 11.27 -16.83 -0.19 0.73 16 8 C -0.09 -1.29 6.85 -83.55 -0.57 -1.86 16 9 C 0.61 10.45 7.85 -12.47 -0.10 10.35 16 10 O -0.55 -10.53 17.12 5.28 0.09 -10.44 16 11 N -0.60 -10.41 3.33 -171.75 -0.57 -10.99 16 12 C 0.11 1.80 5.51 -3.07 -0.02 1.78 16 13 C -0.15 -2.74 6.54 -24.76 -0.16 -2.90 16 14 C 0.17 3.56 3.53 -65.65 -0.23 3.32 16 15 H 0.08 1.63 7.95 -51.93 -0.41 1.22 16 16 N -0.58 -14.46 2.96 -170.88 -0.51 -14.97 16 17 C 0.16 3.85 7.62 59.85 0.46 4.31 16 18 C -0.26 -7.08 9.60 -15.06 -0.14 -7.23 16 19 H 0.07 1.83 7.86 -52.49 -0.41 1.42 16 20 C 0.00 0.13 5.08 -17.43 -0.09 0.05 16 21 N -0.90 -26.14 10.79 55.49 0.60 -25.54 16 22 Si 0.91 21.82 29.58 -169.99 -5.03 16.79 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 26 C 0.09 1.66 6.47 -2.53 -0.02 1.64 16 27 N -0.20 -2.88 9.77 32.85 0.32 -2.56 16 28 N -0.07 -0.87 13.65 60.35 0.82 -0.04 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.06 0.16 6.57 -51.93 -0.34 -0.18 16 34 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.10 0.40 6.57 -51.93 -0.34 0.06 16 39 H 0.10 0.25 8.08 -51.93 -0.42 -0.17 16 40 H 0.20 1.47 8.06 -52.49 -0.42 1.04 16 41 H 0.07 1.03 7.73 -51.93 -0.40 0.63 16 42 H 0.07 1.07 7.61 -51.93 -0.40 0.68 16 43 H 0.07 1.43 7.10 -51.93 -0.37 1.06 16 44 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.03 0.90 7.33 -51.93 -0.38 0.51 16 46 H 0.04 1.08 7.39 -51.93 -0.38 0.69 16 47 H 0.00 0.05 6.34 -51.93 -0.33 -0.28 16 48 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 49 H 0.07 1.47 8.04 -51.93 -0.42 1.05 16 50 H 0.07 1.40 6.33 -51.93 -0.33 1.07 16 LS Contribution 399.29 15.07 6.02 6.02 Total: -1.00 -32.72 399.29 -7.58 -40.30 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -8.29 Total: -3.92 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: -0.81 Total: 8.95 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: 0.44 Total: -57.70 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.72 -7.58 -40.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972318404.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.357 kcal (2) G-P(sol) polarization free energy of solvation -32.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds