Wall clock time and date at job start Tue Mar 31 2020 20:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53008 * 109.47272 * 2 1 4 4 C 1.53005 * 109.47469 * 119.99675 * 2 1 3 5 5 C 1.52998 * 109.47500 * 175.00117 * 4 2 1 6 6 N 1.46493 * 109.47019 * 180.02562 * 5 4 2 7 7 C 1.34818 * 126.59684 * 125.27688 * 6 5 4 8 8 C 1.36592 * 106.84171 * 180.10714 * 7 6 5 9 9 C 1.47528 * 125.77017 * 179.89950 * 8 7 6 10 10 O 1.21592 * 119.99995 * 359.71538 * 9 8 7 11 11 N 1.34779 * 119.99782 * 179.71467 * 9 8 7 12 12 C 1.47016 * 125.64936 * 359.96968 * 11 9 8 13 13 C 1.54322 * 107.40306 * 178.90088 * 12 11 9 14 14 C 1.55406 * 102.82565 * 337.98212 * 13 12 11 15 15 H 1.09003 * 110.91694 * 277.24643 * 14 13 12 16 16 N 1.46502 * 111.03833 * 153.47611 * 14 13 12 17 17 C 1.46503 * 119.99548 * 306.22052 * 16 14 13 18 18 C 1.36930 * 120.00260 * 126.22461 * 16 14 13 19 19 H 1.07999 * 120.00022 * 23.31401 * 18 16 14 20 20 C 1.38813 * 120.00031 * 203.30796 * 18 16 14 21 21 N 1.31621 * 120.00090 * 14.01223 * 20 18 16 22 22 Si 1.86801 * 120.00102 * 194.01666 * 20 18 16 23 23 H 1.48500 * 109.47202 * 60.00143 * 22 20 18 24 24 H 1.48501 * 109.47216 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46945 * 300.00167 * 22 20 18 26 26 C 1.47425 * 125.64538 * 180.02562 * 11 9 8 27 27 N 1.34399 * 108.46016 * 359.62889 * 8 7 6 28 28 N 1.28764 * 109.51956 * 0.23296 * 27 8 7 29 29 H 1.08999 * 109.47736 * 299.99760 * 1 2 3 30 30 H 1.09002 * 109.47175 * 60.00234 * 1 2 3 31 31 H 1.09002 * 109.47029 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47736 * 240.00240 * 2 1 3 33 33 H 1.08994 * 109.47182 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.46830 * 299.99978 * 3 2 1 35 35 H 1.08999 * 109.46544 * 59.99509 * 3 2 1 36 36 H 1.09006 * 109.46380 * 54.99939 * 4 2 1 37 37 H 1.09001 * 109.47127 * 295.00544 * 4 2 1 38 38 H 1.09007 * 109.46843 * 60.00023 * 5 4 2 39 39 H 1.09001 * 109.47279 * 300.00334 * 5 4 2 40 40 H 1.08001 * 126.57559 * 359.96617 * 7 6 5 41 41 H 1.08998 * 109.88563 * 298.39584 * 12 11 9 42 42 H 1.09005 * 109.88297 * 59.40498 * 12 11 9 43 43 H 1.09005 * 110.72235 * 96.24803 * 13 12 11 44 44 H 1.09000 * 110.72337 * 219.52660 * 13 12 11 45 45 H 1.08997 * 109.46988 * 95.17315 * 17 16 14 46 46 H 1.08993 * 109.47188 * 215.17191 * 17 16 14 47 47 H 1.09002 * 109.47224 * 335.17562 * 17 16 14 48 48 H 0.97000 * 120.00341 * 179.97438 * 21 20 18 49 49 H 1.09004 * 110.36595 * 322.92783 * 26 11 9 50 50 H 1.09003 * 110.36567 * 85.25183 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1881 6 7 4.0530 -1.5220 2.3839 7 6 4.8354 -2.6195 2.4149 8 6 5.0424 -2.9209 3.7310 9 6 5.8423 -4.0506 4.2415 10 8 6.3823 -4.8136 3.4639 11 7 5.9744 -4.2368 5.5698 12 6 5.3787 -3.3938 6.6166 13 6 5.7741 -4.0012 7.9790 14 6 6.1037 -5.4761 7.6165 15 1 5.1957 -6.0771 7.5681 16 7 7.0599 -6.0501 8.5666 17 6 8.3309 -5.3699 8.8277 18 6 6.7657 -7.2222 9.2103 19 1 6.0543 -7.9112 8.7794 20 6 7.3819 -7.5251 10.4168 21 7 8.0275 -6.5888 11.0793 22 14 7.2950 -9.2615 11.0999 23 1 7.9138 -10.2049 10.1343 24 1 8.0268 -9.3229 12.3907 25 1 5.8750 -9.6371 11.3181 26 6 6.7413 -5.3188 6.2135 27 7 4.3991 -2.0110 4.4822 28 7 3.8013 -1.1658 3.7164 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6765 1.9563 0.8900 36 1 1.6053 -1.7198 1.2952 37 1 1.7516 -0.1583 2.1370 38 1 3.9994 0.1677 1.1421 39 1 3.8532 -1.3939 0.3003 40 1 5.2222 -3.1583 1.5626 41 1 5.7641 -2.3773 6.5381 42 1 4.2934 -3.3874 6.5145 43 1 6.6523 -3.4989 8.3850 44 1 4.9411 -3.9509 8.6802 45 1 8.2313 -4.7406 9.7120 46 1 9.1120 -6.1113 8.9955 47 1 8.5951 -4.7516 7.9697 48 1 8.4578 -6.8003 11.9225 49 1 6.6418 -6.2440 5.6458 50 1 7.7909 -5.0386 6.3030 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972318404.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:43 Heat of formation + Delta-G solvation = 61.233819 kcal Electronic energy + Delta-G solvation = -28656.632548 eV Core-core repulsion = 24720.959957 eV Total energy + Delta-G solvation = -3935.672591 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -43.24373 -40.86448 -38.84792 -38.12436 -36.56157 -35.22089 -33.47141 -32.13481 -31.31062 -30.46437 -29.24376 -28.03812 -28.01964 -25.91196 -25.54343 -24.23849 -23.28463 -22.73771 -21.06715 -20.90984 -20.50403 -18.92962 -18.64242 -17.61143 -17.40040 -17.18147 -16.64964 -16.37142 -16.05144 -15.71838 -15.50634 -15.06697 -14.96631 -14.81654 -14.69907 -14.39367 -14.25423 -13.96298 -13.85766 -13.45677 -13.31642 -13.13810 -12.99971 -12.82212 -12.77527 -12.66203 -12.42646 -12.37945 -12.16125 -12.10817 -12.06569 -12.01243 -11.79349 -11.68899 -11.52849 -11.44468 -11.24088 -11.14107 -10.62360 -10.35877 -9.67205 -8.77357 -7.81918 -5.31415 0.15094 0.62012 1.10179 1.48989 1.51538 1.57847 1.89774 2.19281 2.53029 3.10610 3.29559 3.32029 3.55100 3.68424 3.75888 3.91221 3.94705 3.98965 4.00763 4.05874 4.22521 4.27460 4.34920 4.36363 4.43196 4.46049 4.57440 4.72873 4.75090 4.81825 4.85154 4.91032 4.96131 4.99577 5.02356 5.05475 5.08746 5.19586 5.22892 5.29760 5.30910 5.41596 5.43313 5.47414 5.52125 5.66253 5.72350 6.33028 6.44446 6.82125 7.06986 7.15153 7.84881 8.29828 9.20802 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.031244 B = 0.001890 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.960987 B =14810.581321 C =14881.777249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.086 4.086 3 C -0.155 4.155 4 C -0.124 4.124 5 C 0.110 3.890 6 N -0.347 5.347 7 C 0.113 3.887 8 C -0.122 4.122 9 C 0.612 3.388 10 O -0.574 6.574 11 N -0.601 5.601 12 C 0.128 3.872 13 C -0.142 4.142 14 C 0.168 3.832 15 H 0.075 0.925 16 N -0.599 5.599 17 C 0.176 3.824 18 C -0.269 4.269 19 H 0.071 0.929 20 C -0.048 4.048 21 N -0.934 5.934 22 Si 0.969 3.031 23 H -0.280 1.280 24 H -0.294 1.294 25 H -0.275 1.275 26 C 0.100 3.900 27 N -0.220 5.220 28 N -0.085 5.085 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.114 0.886 39 H 0.141 0.859 40 H 0.238 0.762 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.081 0.919 45 H 0.012 0.988 46 H 0.014 0.986 47 H 0.029 0.971 48 H 0.249 0.751 49 H 0.065 0.935 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.586 16.546 -25.940 33.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.105 4.105 3 C -0.212 4.212 4 C -0.163 4.163 5 C -0.009 4.009 6 N -0.131 5.131 7 C -0.045 4.045 8 C -0.261 4.261 9 C 0.400 3.600 10 O -0.454 6.454 11 N -0.333 5.333 12 C 0.005 3.995 13 C -0.182 4.182 14 C 0.059 3.941 15 H 0.093 0.907 16 N -0.321 5.321 17 C 0.032 3.968 18 C -0.399 4.399 19 H 0.089 0.911 20 C -0.243 4.243 21 N -0.580 5.580 22 Si 0.797 3.203 23 H -0.207 1.207 24 H -0.220 1.220 25 H -0.201 1.201 26 C -0.024 4.024 27 N -0.093 5.093 28 N -0.066 5.066 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.109 0.891 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.132 0.868 39 H 0.158 0.842 40 H 0.254 0.746 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.100 0.900 45 H 0.030 0.970 46 H 0.033 0.967 47 H 0.047 0.953 48 H 0.058 0.942 49 H 0.083 0.917 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.944 17.180 -25.352 33.248 hybrid contribution 0.649 -1.507 0.328 1.673 sum -12.295 15.674 -25.024 31.985 Atomic orbital electron populations 1.21847 0.94999 1.01885 1.02068 1.21027 0.96008 0.96463 0.97002 1.21968 1.01593 0.95534 1.02119 1.21915 0.92569 1.01813 0.99972 1.22675 0.96303 0.99670 0.82205 1.50832 1.33469 1.19778 1.09013 1.23797 0.92320 0.88870 0.99554 1.21250 1.10927 1.02006 0.91955 1.16710 0.79579 0.83048 0.80657 1.90764 1.50850 1.47590 1.56230 1.48258 1.50274 1.29778 1.04978 1.21976 0.98505 0.93750 0.85221 1.23145 1.02079 0.97041 0.95911 1.21561 0.91988 0.93279 0.87317 0.90707 1.43950 1.15782 1.25103 1.47218 1.20518 0.86270 0.94563 0.95468 1.19499 1.24162 0.95352 1.00913 0.91098 1.25763 1.01018 1.01226 0.96327 1.70216 1.39811 1.32535 1.15393 0.85322 0.77805 0.80209 0.76956 1.20658 1.22023 1.20051 1.22692 0.95533 0.89543 0.94668 1.74747 1.05908 1.01334 1.27355 1.81901 1.21261 1.19277 0.84131 0.93262 0.91708 0.92750 0.89127 0.91591 0.91893 0.93251 0.91611 0.91741 0.86791 0.84153 0.74627 0.90680 0.90367 0.91523 0.90008 0.96996 0.96707 0.95252 0.94177 0.91675 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.19 71.98 0.66 -0.31 16 2 C -0.09 -0.40 2.92 -10.79 -0.03 -0.43 16 3 C -0.15 -0.71 8.95 71.98 0.64 -0.06 16 4 C -0.12 -0.96 4.89 30.60 0.15 -0.81 16 5 C 0.11 0.69 6.30 86.38 0.54 1.23 16 6 N -0.35 -5.45 3.69 -347.11 -1.28 -6.73 16 7 C 0.11 2.01 11.27 83.85 0.95 2.95 16 8 C -0.12 -3.26 6.85 40.82 0.28 -2.98 16 9 C 0.61 20.31 7.85 86.69 0.68 20.99 16 10 O -0.57 -21.47 17.12 -4.00 -0.07 -21.54 16 11 N -0.60 -20.63 3.33 -815.55 -2.71 -23.34 16 12 C 0.13 4.00 5.51 86.73 0.48 4.48 16 13 C -0.14 -5.05 6.54 31.87 0.21 -4.84 16 14 C 0.17 6.91 3.53 46.47 0.16 7.08 16 15 H 0.07 3.12 7.95 -2.39 -0.02 3.10 16 16 N -0.60 -30.05 2.96 -694.54 -2.05 -32.11 16 17 C 0.18 8.76 7.62 127.77 0.97 9.73 16 18 C -0.27 -14.81 9.60 84.03 0.81 -14.00 16 19 H 0.07 3.79 7.86 -2.91 -0.02 3.76 16 20 C -0.05 -2.67 5.08 84.86 0.43 -2.24 16 21 N -0.93 -55.08 10.79 21.65 0.23 -54.84 16 22 Si 0.97 45.25 29.58 68.60 2.03 47.28 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 25 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 26 C 0.10 3.84 6.47 86.85 0.56 4.40 16 27 N -0.22 -6.10 9.77 -49.99 -0.49 -6.59 16 28 N -0.09 -2.03 13.65 37.02 0.51 -1.52 16 29 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.07 0.18 6.57 -2.39 -0.02 0.16 16 34 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.11 0.48 6.57 -2.38 -0.02 0.47 16 39 H 0.14 -0.06 8.08 -2.39 -0.02 -0.08 16 40 H 0.24 2.41 8.06 -2.91 -0.02 2.38 16 41 H 0.07 2.25 7.73 -2.39 -0.02 2.23 16 42 H 0.08 2.33 7.61 -2.38 -0.02 2.32 16 43 H 0.07 2.51 7.10 -2.38 -0.02 2.49 16 44 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 45 H 0.01 0.64 7.33 -2.39 -0.02 0.62 16 46 H 0.01 0.77 7.39 -2.39 -0.02 0.76 16 47 H 0.03 1.27 6.34 -2.39 -0.02 1.25 16 48 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 49 H 0.06 2.59 8.04 -2.39 -0.02 2.57 16 50 H 0.06 2.48 6.33 -2.39 -0.02 2.46 16 Total: -1.00 -71.71 399.29 4.58 -67.13 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: 0.92 Total: 7.08 kcal Atomic # 6 Polarization: 17.68 SS G_CDS: 7.50 Total: 25.17 kcal Atomic # 7 Polarization: -119.33 SS G_CDS: -5.80 Total: -125.12 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.07 Total: -21.54 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -71.71 4.58 -67.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972318404.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.360 kcal (2) G-P(sol) polarization free energy of solvation -71.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds