Wall clock time and date at job start Tue Mar 31 2020 18:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36593 * 126.57613 * 2 1 4 4 C 1.47517 * 125.77432 * 359.97438 * 3 2 1 5 5 O 1.21600 * 119.99782 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00379 * 179.97438 * 4 3 2 7 7 C 1.46506 * 120.00304 * 179.97438 * 6 4 3 8 8 H 1.08998 * 110.88589 * 322.58031 * 7 6 4 9 9 C 1.54911 * 111.00133 * 86.45208 * 7 6 4 10 10 N 1.47428 * 104.82718 * 81.10752 * 9 7 6 11 11 C 1.36941 * 125.64577 * 204.15997 * 10 9 7 12 12 H 1.08001 * 119.99648 * 161.51160 * 11 10 9 13 13 C 1.38812 * 120.00082 * 341.51758 * 11 10 9 14 14 N 1.31614 * 119.99984 * 157.57975 * 13 11 10 15 15 Si 1.86794 * 119.99941 * 337.58156 * 13 11 10 16 16 H 1.48507 * 109.47423 * 84.53994 * 15 13 11 17 17 H 1.48497 * 109.47192 * 204.54045 * 15 13 11 18 18 H 1.48505 * 109.47132 * 324.54053 * 15 13 11 19 19 C 1.47019 * 108.70643 * 24.12397 * 10 9 7 20 20 C 1.54319 * 107.40121 * 358.86551 * 19 10 9 21 21 C 1.53003 * 110.71949 * 96.24477 * 20 19 10 22 22 C 1.52998 * 110.72140 * 219.51719 * 20 19 10 23 23 N 1.34402 * 108.46047 * 180.24338 * 3 2 1 24 24 N 1.28768 * 109.51595 * 359.58868 * 23 3 2 25 25 N 1.34812 * 126.58248 * 180.02562 * 2 1 3 26 26 C 1.46495 * 126.59527 * 359.97438 * 25 2 1 27 27 C 1.53001 * 109.47360 * 120.00065 * 26 25 2 28 28 C 1.53003 * 109.47333 * 240.00112 * 26 25 2 29 29 H 1.09003 * 109.47135 * 90.02867 * 1 2 3 30 30 H 1.09003 * 109.46965 * 210.01664 * 1 2 3 31 31 H 1.08995 * 109.47615 * 330.01920 * 1 2 3 32 32 H 0.97002 * 119.99942 * 0.02562 * 6 4 3 33 33 H 1.08994 * 110.36967 * 322.27073 * 9 7 6 34 34 H 1.08997 * 110.46198 * 199.98703 * 9 7 6 35 35 H 0.97003 * 120.00294 * 179.97438 * 14 13 11 36 36 H 1.09006 * 109.87795 * 118.35555 * 19 10 9 37 37 H 1.08992 * 109.88688 * 239.36843 * 19 10 9 38 38 H 1.08999 * 109.47449 * 61.45651 * 21 20 19 39 39 H 1.09002 * 109.47057 * 181.45182 * 21 20 19 40 40 H 1.09004 * 109.47282 * 301.45178 * 21 20 19 41 41 H 1.08997 * 109.46993 * 58.54443 * 22 20 19 42 42 H 1.09005 * 109.47295 * 178.54682 * 22 20 19 43 43 H 1.09001 * 109.47285 * 298.54684 * 22 20 19 44 44 H 1.09007 * 109.47498 * 0.02562 * 26 25 2 45 45 H 1.09003 * 109.47277 * 179.97438 * 27 26 25 46 46 H 1.08999 * 109.47169 * 300.00481 * 27 26 25 47 47 H 1.09006 * 109.46649 * 60.00120 * 27 26 25 48 48 H 1.09009 * 109.46824 * 60.00300 * 28 26 25 49 49 H 1.09000 * 109.46970 * 179.97438 * 28 26 25 50 50 H 1.08996 * 109.47235 * 300.00175 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3209 1.0969 0.0000 4 6 1.8737 2.5027 -0.0005 5 8 0.6858 2.7627 -0.0015 6 7 2.7815 3.4988 0.0000 7 6 2.3373 4.8949 -0.0011 8 1 1.4495 5.0196 -0.6209 9 6 2.0821 5.3974 1.4419 10 7 3.4166 5.7485 1.9607 11 6 3.7734 5.7907 3.2821 12 1 4.8164 5.7623 3.5610 13 6 2.7946 5.8698 4.2632 14 7 3.0598 5.4761 5.4907 15 14 1.1009 6.5349 3.8411 16 1 0.2650 5.4421 3.2822 17 1 0.4593 7.0704 5.0686 18 1 1.2317 7.6211 2.8368 19 6 4.3012 6.0450 0.8245 20 6 3.4797 5.8403 -0.4657 21 6 2.9115 7.1713 -0.9625 22 6 4.3304 5.1751 -1.5495 23 7 3.5983 0.6790 -0.0054 24 7 3.6298 -0.6083 -0.0001 25 7 2.3104 -1.0825 -0.0005 26 6 1.8865 -2.4848 -0.0006 27 6 2.4288 -3.1815 -1.2501 28 6 2.4297 -3.1820 1.2484 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8899 0.5141 31 1 -0.3634 0.8901 0.5135 32 1 3.7291 3.2913 0.0004 33 1 1.6363 4.6070 2.0456 34 1 1.4364 6.2754 1.4309 35 1 2.3759 5.5317 6.1764 36 1 4.6475 7.0769 0.8837 37 1 5.1545 5.3668 0.8320 38 1 3.7305 7.8514 -1.1963 39 1 2.3146 6.9998 -1.8583 40 1 2.2844 7.6108 -0.1867 41 1 4.6978 4.2158 -1.1851 42 1 3.7240 5.0170 -2.4414 43 1 5.1755 5.8186 -1.7941 44 1 0.7976 -2.5353 -0.0007 45 1 2.1137 -4.2250 -1.2500 46 1 2.0419 -2.6849 -2.1399 47 1 3.5177 -3.1312 -1.2504 48 1 2.0432 -2.6856 2.1386 49 1 2.1138 -4.2252 1.2485 50 1 3.5185 -3.1316 1.2480 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977389673.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:41 Heat of formation + Delta-G solvation = 79.518964 kcal Electronic energy + Delta-G solvation = -30538.471191 eV Core-core repulsion = 26603.591504 eV Total energy + Delta-G solvation = -3934.879687 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.28928 -39.77235 -37.98552 -36.60886 -33.95689 -33.32605 -32.86945 -31.26030 -31.01196 -28.61953 -27.79495 -27.75257 -26.77519 -26.05949 -24.10090 -23.79979 -22.39027 -20.80050 -20.48338 -19.79818 -18.86803 -17.63172 -16.65025 -16.56693 -16.24538 -15.86854 -15.23477 -14.93996 -14.46788 -14.31977 -14.13040 -13.89441 -13.63387 -13.60090 -13.30732 -13.18951 -13.12080 -12.87838 -12.71781 -12.59226 -12.48902 -12.27084 -12.03945 -12.00074 -11.96761 -11.61959 -11.58158 -11.42460 -11.08963 -11.04289 -10.70220 -10.57483 -10.25981 -10.18116 -10.10751 -10.07612 -9.72263 -9.38101 -9.12015 -8.72541 -8.44202 -6.94801 -5.86954 -3.16274 1.12157 1.84182 1.90122 3.38545 3.46522 3.55089 3.55508 3.57572 3.98501 4.14591 4.34177 4.45266 4.53605 4.63385 4.76381 4.80278 4.92603 4.98643 5.04720 5.13260 5.20091 5.21443 5.23175 5.26188 5.34088 5.51259 5.52593 5.62662 5.64133 5.67878 5.73966 5.80621 5.85906 5.92055 5.99592 6.05401 6.15457 6.21423 6.31688 6.39173 6.45256 6.48986 6.66383 6.70361 6.84215 6.97132 7.74599 7.81712 8.06614 8.38804 8.50120 8.91139 9.77223 10.25852 11.29246 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012659 B = 0.003713 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.263602 B = 7540.093763 C = 8455.237186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.120 3.880 3 C -0.099 4.099 4 C 0.605 3.395 5 O -0.544 6.544 6 N -0.688 5.688 7 C 0.141 3.859 8 H 0.094 0.906 9 C 0.105 3.895 10 N -0.605 5.605 11 C -0.238 4.238 12 H 0.091 0.909 13 C 0.023 3.977 14 N -0.909 5.909 15 Si 0.878 3.122 16 H -0.283 1.283 17 H -0.303 1.303 18 H -0.276 1.276 19 C 0.142 3.858 20 C -0.087 4.087 21 C -0.131 4.131 22 C -0.133 4.133 23 N -0.201 5.201 24 N -0.067 5.067 25 N -0.359 5.359 26 C 0.144 3.856 27 C -0.161 4.161 28 C -0.164 4.164 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.409 0.591 33 H 0.063 0.937 34 H 0.034 0.966 35 H 0.262 0.738 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.108 0.892 45 H 0.081 0.919 46 H 0.063 0.937 47 H 0.074 0.926 48 H 0.065 0.935 49 H 0.081 0.919 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.988 -15.458 -16.981 23.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.017 4.017 3 C -0.238 4.238 4 C 0.389 3.611 5 O -0.421 6.421 6 N -0.338 5.338 7 C 0.035 3.965 8 H 0.112 0.888 9 C -0.021 4.021 10 N -0.332 5.332 11 C -0.365 4.365 12 H 0.109 0.891 13 C -0.175 4.175 14 N -0.553 5.553 15 Si 0.708 3.292 16 H -0.210 1.210 17 H -0.231 1.231 18 H -0.202 1.202 19 C 0.017 3.983 20 C -0.088 4.088 21 C -0.188 4.188 22 C -0.190 4.190 23 N -0.074 5.074 24 N -0.046 5.046 25 N -0.147 5.147 26 C 0.043 3.957 27 C -0.219 4.219 28 C -0.222 4.222 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.132 0.868 32 H 0.246 0.754 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.126 0.874 45 H 0.100 0.900 46 H 0.082 0.918 47 H 0.093 0.907 48 H 0.084 0.916 49 H 0.100 0.900 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.342 -15.698 -16.711 23.170 hybrid contribution -1.502 0.399 0.120 1.559 sum -4.844 -15.299 -16.591 23.082 Atomic orbital electron populations 1.20714 0.84896 1.05427 1.04377 1.21883 0.96171 0.86388 0.97297 1.21236 0.89019 0.95445 1.18144 1.16673 0.85607 0.82468 0.76328 1.90739 1.15941 1.83620 1.51835 1.45627 1.10197 1.05251 1.72775 1.22221 0.96905 0.79346 0.98027 0.88790 1.22334 0.89501 0.97739 0.92552 1.44721 1.06754 1.79701 1.02026 1.18612 0.94429 1.45124 0.78349 0.89097 1.24958 0.97480 1.00208 0.94900 1.69850 1.34542 1.48520 1.02437 0.87041 0.85934 0.80102 0.76141 1.20985 1.23127 1.20164 1.21480 0.93004 0.98387 0.85474 1.21905 0.95554 0.95293 0.96019 1.21723 1.00947 0.95458 1.00710 1.21727 0.99355 1.00348 0.97598 1.74629 1.19053 1.04087 1.09597 1.81898 0.96243 1.03332 1.23120 1.50595 1.06374 1.07096 1.50597 1.21615 1.00408 0.75435 0.98257 1.22150 1.03250 1.00752 0.95783 1.22171 1.03331 1.00755 0.95939 0.89227 0.90924 0.86768 0.75425 0.91916 0.94857 0.92854 0.94785 0.94836 0.92124 0.92817 0.91962 0.92430 0.92668 0.92249 0.87386 0.90005 0.91791 0.90675 0.91559 0.90001 0.90615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 9.41 36.01 0.34 -0.62 16 2 C 0.12 1.59 7.02 -81.88 -0.57 1.01 16 3 C -0.10 -1.62 6.99 -83.55 -0.58 -2.21 16 4 C 0.61 10.96 7.82 -12.48 -0.10 10.86 16 5 O -0.54 -10.58 14.46 5.28 0.08 -10.51 16 6 N -0.69 -12.26 4.68 -52.64 -0.25 -12.51 16 7 C 0.14 2.57 2.57 -65.65 -0.17 2.40 16 8 H 0.09 1.65 7.63 -51.93 -0.40 1.25 16 9 C 0.10 2.42 4.08 -2.53 -0.01 2.41 16 10 N -0.61 -14.90 3.21 -170.08 -0.55 -15.44 16 11 C -0.24 -6.93 10.57 -15.06 -0.16 -7.09 16 12 H 0.09 2.80 8.06 -52.49 -0.42 2.37 16 13 C 0.02 0.69 5.43 -17.43 -0.09 0.59 16 14 N -0.91 -28.95 13.97 55.49 0.78 -28.17 16 15 Si 0.88 23.55 24.27 -169.99 -4.13 19.42 16 16 H -0.28 -7.55 6.49 56.52 0.37 -7.18 16 17 H -0.30 -8.19 7.11 56.52 0.40 -7.79 16 18 H -0.28 -7.19 6.66 56.52 0.38 -6.81 16 19 C 0.14 2.80 6.40 -3.07 -0.02 2.78 16 20 C -0.09 -1.38 0.81 -152.54 -0.12 -1.50 16 21 C -0.13 -1.85 8.44 37.16 0.31 -1.54 16 22 C -0.13 -1.71 8.17 37.16 0.30 -1.41 16 23 N -0.20 -3.36 12.04 32.84 0.40 -2.96 16 24 N -0.07 -1.00 13.67 60.35 0.82 -0.17 16 25 N -0.36 -4.25 3.28 -50.41 -0.17 -4.42 16 26 C 0.14 1.05 3.68 -67.93 -0.25 0.80 16 27 C -0.16 -0.96 9.47 37.16 0.35 -0.61 16 28 C -0.16 -1.12 9.47 37.16 0.35 -0.77 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.51 7.19 -51.93 -0.37 0.14 16 31 H 0.11 1.43 6.43 -51.93 -0.33 1.09 16 32 H 0.41 7.05 6.50 -40.82 -0.27 6.78 16 33 H 0.06 1.64 6.63 -51.93 -0.34 1.30 16 34 H 0.03 0.80 5.16 -51.93 -0.27 0.53 16 35 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 36 H 0.03 0.67 7.84 -51.93 -0.41 0.27 16 37 H 0.03 0.66 7.82 -51.93 -0.41 0.25 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 1.00 7.46 -51.93 -0.39 0.61 16 41 H 0.06 0.76 6.21 -51.93 -0.32 0.44 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.11 0.54 6.79 -51.92 -0.35 0.18 16 45 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 49 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 391.74 15.07 5.90 5.90 Total: -1.00 -35.48 391.74 -5.66 -41.13 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -8.13 Total: 2.61 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -0.42 Total: 5.12 kcal Atomic # 7 Polarization: -64.72 SS G_CDS: 1.04 Total: -63.68 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.08 Total: -10.51 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -4.13 Total: 19.42 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.48 -5.66 -41.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977389673.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.653 kcal (2) G-P(sol) polarization free energy of solvation -35.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds