Wall clock time and date at job start Tue Mar 31 2020 18:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36596 * 126.58191 * 2 1 4 4 C 1.47526 * 125.76532 * 359.97112 * 3 2 1 5 5 O 1.21590 * 120.00436 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99386 * 180.02562 * 4 3 2 7 7 C 1.46506 * 119.99693 * 179.97438 * 6 4 3 8 8 H 1.08996 * 109.46660 * 35.00912 * 7 6 4 9 9 C 1.52997 * 109.47289 * 275.00198 * 7 6 4 10 10 C 1.53000 * 109.47060 * 300.00274 * 9 7 6 11 11 C 1.53002 * 109.47233 * 299.99657 * 10 9 7 12 12 C 1.52997 * 109.46817 * 60.00194 * 11 10 9 13 13 H 1.09002 * 109.47153 * 60.00231 * 12 11 10 14 14 N 1.46500 * 109.47007 * 180.02562 * 12 11 10 15 15 C 1.36933 * 119.99983 * 275.00168 * 14 12 11 16 16 H 1.07997 * 120.00042 * 359.97438 * 15 14 12 17 17 C 1.38812 * 120.00189 * 180.02562 * 15 14 12 18 18 N 1.31621 * 120.00238 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99935 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47140 * 90.00417 * 19 17 15 21 21 H 1.48501 * 109.47304 * 210.00716 * 19 17 15 22 22 H 1.48505 * 109.47154 * 330.00556 * 19 17 15 23 23 C 1.52999 * 109.46684 * 155.00124 * 7 6 4 24 24 N 1.34394 * 108.45926 * 180.24052 * 3 2 1 25 25 N 1.28768 * 109.52493 * 359.58231 * 24 3 2 26 26 N 1.34815 * 126.57992 * 179.97438 * 2 1 3 27 27 C 1.46506 * 126.59591 * 0.02562 * 26 2 1 28 28 C 1.53000 * 109.47141 * 119.99876 * 27 26 2 29 29 C 1.52997 * 109.47029 * 239.99924 * 27 26 2 30 30 H 1.09006 * 109.46964 * 89.97928 * 1 2 3 31 31 H 1.09006 * 109.47541 * 209.97639 * 1 2 3 32 32 H 1.08993 * 109.47657 * 329.97906 * 1 2 3 33 33 H 0.97000 * 120.00190 * 0.02562 * 6 4 3 34 34 H 1.09002 * 109.47153 * 179.97438 * 9 7 6 35 35 H 1.09001 * 109.46832 * 60.00146 * 9 7 6 36 36 H 1.08992 * 109.47399 * 59.99823 * 10 9 7 37 37 H 1.09004 * 109.46724 * 180.02562 * 10 9 7 38 38 H 1.08993 * 109.47662 * 180.02562 * 11 10 9 39 39 H 1.09002 * 109.47075 * 300.00932 * 11 10 9 40 40 H 0.97002 * 120.00110 * 95.00836 * 14 12 11 41 41 H 0.97001 * 119.99778 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.47486 * 300.00065 * 23 7 6 43 43 H 1.09002 * 109.46716 * 180.02562 * 23 7 6 44 44 H 1.08999 * 109.46713 * 0.02562 * 27 26 2 45 45 H 1.08997 * 109.46879 * 60.00015 * 28 27 26 46 46 H 1.09004 * 109.46884 * 180.02562 * 28 27 26 47 47 H 1.08999 * 109.46781 * 300.00316 * 28 27 26 48 48 H 1.09006 * 109.47102 * 60.00566 * 29 27 26 49 49 H 1.09004 * 109.46965 * 179.97438 * 29 27 26 50 50 H 1.08999 * 109.47513 * 299.99681 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8737 2.5027 -0.0006 5 8 0.6859 2.7628 -0.0007 6 7 2.7817 3.4987 -0.0011 7 6 2.3375 4.8948 -0.0022 8 1 1.4251 4.9861 0.5870 9 6 2.0634 5.3416 -1.4396 10 6 3.3443 5.2132 -2.2666 11 6 4.4353 6.0960 -1.6574 12 6 4.7094 5.6492 -0.2200 13 1 5.0399 4.6105 -0.2191 14 7 5.7537 6.4949 0.3636 15 6 7.0734 6.1935 0.1574 16 1 7.3445 5.3322 -0.4350 17 6 8.0629 6.9945 0.7108 18 7 9.3315 6.7046 0.5131 19 14 7.5941 8.4839 1.7361 20 1 7.4682 8.0843 3.1608 21 1 8.6444 9.5255 1.6051 22 1 6.2970 9.0260 1.2575 23 6 3.4285 5.7775 0.6071 24 7 3.5983 0.6788 -0.0054 25 7 3.6299 -0.6084 0.0002 26 7 2.3104 -1.0826 0.0005 27 6 1.8864 -2.4850 0.0006 28 6 2.4296 -3.1821 -1.2483 29 6 2.4287 -3.1816 1.2501 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3634 -0.8902 0.5135 32 1 -0.3634 0.8897 0.5141 33 1 3.7292 3.2912 -0.0014 34 1 1.7325 6.3802 -1.4404 35 1 1.2861 4.7126 -1.8736 36 1 3.6747 4.1746 -2.2657 37 1 3.1491 5.5320 -3.2905 38 1 5.3477 6.0050 -2.2467 39 1 4.1048 7.1347 -1.6581 40 1 5.5102 7.2683 0.8961 41 1 10.0229 7.2645 0.8995 42 1 3.6238 5.4592 1.6311 43 1 3.0979 6.8161 0.6066 44 1 0.7975 -2.5352 -0.0003 45 1 3.5184 -3.1317 -1.2479 46 1 2.1137 -4.2254 -1.2485 47 1 2.0432 -2.6857 -2.1385 48 1 2.0416 -2.6850 2.1399 49 1 2.1128 -4.2249 1.2504 50 1 3.5175 -3.1314 1.2505 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981426986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:25 Heat of formation + Delta-G solvation = 52.680107 kcal Electronic energy + Delta-G solvation = -29676.210090 eV Core-core repulsion = 25740.166583 eV Total energy + Delta-G solvation = -3936.043508 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.43355 -39.89605 -37.90624 -36.72585 -34.59473 -33.33389 -32.92207 -31.35976 -31.17504 -29.66127 -28.35704 -27.88449 -27.79844 -24.22600 -23.74426 -23.24094 -22.02524 -20.90937 -20.67591 -20.38552 -18.84798 -17.92748 -17.52680 -16.68170 -16.38260 -15.62740 -15.30316 -14.99545 -14.70687 -14.48719 -14.40386 -13.99927 -13.88131 -13.66036 -13.51938 -13.40389 -13.33462 -12.80626 -12.76435 -12.72749 -12.58777 -12.21435 -12.15933 -12.05851 -11.87864 -11.77864 -11.71358 -11.21397 -11.18014 -10.91868 -10.86118 -10.39286 -10.37626 -10.19630 -10.04172 -9.97657 -9.64730 -9.51828 -9.29308 -8.88505 -8.79419 -7.22133 -5.71943 -3.07399 0.97727 1.68179 1.77586 3.24559 3.31879 3.41033 3.43768 3.48745 3.87395 3.99725 4.24298 4.34438 4.37059 4.59831 4.63389 4.80394 4.93193 4.97225 5.03466 5.08767 5.11702 5.14911 5.15063 5.21186 5.39059 5.50172 5.50969 5.54219 5.57975 5.64701 5.67770 5.67974 5.81794 5.84595 5.93277 6.02311 6.08155 6.21122 6.25016 6.29235 6.45782 6.50699 6.65882 6.69823 6.93444 7.06299 7.57548 7.91741 8.04899 8.26755 8.47126 9.25697 9.98131 10.17797 11.46475 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014522 B = 0.002789 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.597857 B =10036.404436 C =11138.094963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.119 3.881 3 C -0.106 4.106 4 C 0.606 3.394 5 O -0.547 6.547 6 N -0.701 5.701 7 C 0.153 3.847 8 H 0.087 0.913 9 C -0.127 4.127 10 C -0.117 4.117 11 C -0.136 4.136 12 C 0.183 3.817 13 H 0.053 0.947 14 N -0.748 5.748 15 C -0.240 4.240 16 H 0.091 0.909 17 C 0.003 3.997 18 N -0.935 5.935 19 Si 0.884 3.116 20 H -0.285 1.285 21 H -0.292 1.292 22 H -0.277 1.277 23 C -0.138 4.138 24 N -0.198 5.198 25 N -0.062 5.062 26 N -0.359 5.359 27 C 0.144 3.856 28 C -0.163 4.163 29 C -0.164 4.164 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.412 0.588 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.360 0.640 41 H 0.259 0.741 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.108 0.892 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.082 0.918 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.468 -18.997 -2.115 29.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.019 4.019 3 C -0.245 4.245 4 C 0.391 3.609 5 O -0.424 6.424 6 N -0.353 5.353 7 C 0.048 3.952 8 H 0.105 0.895 9 C -0.166 4.166 10 C -0.155 4.155 11 C -0.176 4.176 12 C 0.074 3.926 13 H 0.071 0.929 14 N -0.390 5.390 15 C -0.370 4.370 16 H 0.109 0.891 17 C -0.192 4.192 18 N -0.583 5.583 19 Si 0.714 3.286 20 H -0.212 1.212 21 H -0.219 1.219 22 H -0.203 1.203 23 C -0.176 4.176 24 N -0.071 5.071 25 N -0.041 5.041 26 N -0.146 5.146 27 C 0.043 3.957 28 C -0.221 4.221 29 C -0.222 4.222 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.131 0.869 33 H 0.250 0.750 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.193 0.807 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.126 0.874 45 H 0.095 0.905 46 H 0.101 0.899 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.101 0.899 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.564 -19.327 -2.167 29.038 hybrid contribution -0.585 1.112 0.674 1.426 sum -22.148 -18.215 -1.492 28.715 Atomic orbital electron populations 1.20702 0.84909 1.05204 1.04514 1.21894 0.96136 0.86454 0.97375 1.21258 0.89106 0.95454 1.18719 1.16712 0.85578 0.82539 0.76106 1.90724 1.15942 1.83713 1.52050 1.46015 1.10588 1.05671 1.73025 1.20974 0.97908 0.79457 0.96835 0.89513 1.21907 0.98130 1.01377 0.95146 1.21509 0.95184 1.00497 0.98300 1.22237 0.97818 0.98732 0.98850 1.20146 0.86963 0.94977 0.90544 0.92891 1.42778 1.02766 1.31254 1.62217 1.19084 0.80570 1.10062 1.27305 0.89148 1.24670 0.95060 0.98862 1.00632 1.69706 0.98481 1.40526 1.49539 0.86557 0.77314 0.83836 0.80850 1.21170 1.21880 1.20327 1.22173 0.95591 0.99681 1.00202 1.74701 1.18881 1.04130 1.09413 1.81983 0.96075 1.03290 1.22777 1.50671 1.06417 1.07168 1.50336 1.21632 1.00351 0.75378 0.98362 1.22160 1.03395 1.00793 0.95735 1.22168 1.03426 1.00809 0.95750 0.89176 0.90945 0.86922 0.75030 0.91123 0.91920 0.92309 0.92723 0.91583 0.92708 0.80694 0.93138 0.91058 0.90557 0.87388 0.90549 0.89937 0.91724 0.91719 0.89939 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.70 9.41 36.00 0.34 -0.36 16 2 C 0.12 1.29 7.02 -81.88 -0.57 0.71 16 3 C -0.11 -1.46 6.99 -83.55 -0.58 -2.05 16 4 C 0.61 8.78 7.78 -12.47 -0.10 8.69 16 5 O -0.55 -8.33 14.38 5.29 0.08 -8.25 16 6 N -0.70 -10.09 4.23 -54.85 -0.23 -10.32 16 7 C 0.15 2.11 2.78 -67.93 -0.19 1.92 16 8 H 0.09 1.18 7.58 -51.93 -0.39 0.78 16 9 C -0.13 -1.67 5.60 -26.73 -0.15 -1.82 16 10 C -0.12 -1.68 5.77 -26.73 -0.15 -1.83 16 11 C -0.14 -2.36 5.50 -26.73 -0.15 -2.51 16 12 C 0.18 3.44 2.60 -67.93 -0.18 3.26 16 13 H 0.05 1.05 6.44 -51.93 -0.33 0.71 16 14 N -0.75 -17.52 4.92 -53.43 -0.26 -17.79 16 15 C -0.24 -6.78 10.41 -15.06 -0.16 -6.93 16 16 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 17 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 18 N -0.93 -29.66 13.97 55.49 0.78 -28.89 16 19 Si 0.88 22.30 27.73 -169.99 -4.71 17.59 16 20 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 22 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 23 C -0.14 -2.11 5.08 -26.73 -0.14 -2.25 16 24 N -0.20 -3.02 12.04 32.85 0.40 -2.63 16 25 N -0.06 -0.85 13.67 60.35 0.82 -0.02 16 26 N -0.36 -3.62 3.28 -50.40 -0.17 -3.79 16 27 C 0.14 0.84 3.68 -67.93 -0.25 0.59 16 28 C -0.16 -0.84 9.47 37.16 0.35 -0.49 16 29 C -0.16 -0.85 9.47 37.16 0.35 -0.50 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.32 7.18 -51.93 -0.37 -0.05 16 32 H 0.11 1.01 6.43 -51.93 -0.33 0.68 16 33 H 0.41 6.28 6.55 -40.82 -0.27 6.02 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.88 7.60 -51.93 -0.39 0.48 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.36 8.31 5.66 -40.82 -0.23 8.08 16 41 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.11 0.36 6.79 -51.93 -0.35 0.01 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 50 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 396.61 15.07 5.98 5.98 Total: -1.00 -34.28 396.61 -7.19 -41.46 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -8.19 Total: 10.22 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -1.67 Total: -3.57 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: 1.33 Total: -63.43 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.08 Total: -8.25 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.71 Total: 17.59 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.28 -7.19 -41.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981426986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.144 kcal (2) G-P(sol) polarization free energy of solvation -34.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds