Wall clock time and date at job start Tue Mar 31 2020 18:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36596 * 126.58191 * 2 1 4 4 C 1.47526 * 125.76532 * 359.97112 * 3 2 1 5 5 O 1.21590 * 120.00436 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99386 * 180.02562 * 4 3 2 7 7 C 1.46506 * 119.99693 * 179.97438 * 6 4 3 8 8 H 1.08996 * 109.46660 * 35.00912 * 7 6 4 9 9 C 1.52997 * 109.47289 * 275.00198 * 7 6 4 10 10 C 1.53000 * 109.47060 * 300.00274 * 9 7 6 11 11 C 1.53002 * 109.47233 * 299.99657 * 10 9 7 12 12 C 1.52997 * 109.46817 * 60.00194 * 11 10 9 13 13 H 1.09002 * 109.47153 * 60.00231 * 12 11 10 14 14 N 1.46500 * 109.47007 * 180.02562 * 12 11 10 15 15 C 1.36933 * 119.99983 * 275.00168 * 14 12 11 16 16 H 1.07997 * 120.00042 * 359.97438 * 15 14 12 17 17 C 1.38812 * 120.00189 * 180.02562 * 15 14 12 18 18 N 1.31621 * 120.00238 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99935 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47140 * 90.00417 * 19 17 15 21 21 H 1.48501 * 109.47304 * 210.00716 * 19 17 15 22 22 H 1.48505 * 109.47154 * 330.00556 * 19 17 15 23 23 C 1.52999 * 109.46684 * 155.00124 * 7 6 4 24 24 N 1.34394 * 108.45926 * 180.24052 * 3 2 1 25 25 N 1.28768 * 109.52493 * 359.58231 * 24 3 2 26 26 N 1.34815 * 126.57992 * 179.97438 * 2 1 3 27 27 C 1.46506 * 126.59591 * 0.02562 * 26 2 1 28 28 C 1.53000 * 109.47141 * 119.99876 * 27 26 2 29 29 C 1.52997 * 109.47029 * 239.99924 * 27 26 2 30 30 H 1.09006 * 109.46964 * 89.97928 * 1 2 3 31 31 H 1.09006 * 109.47541 * 209.97639 * 1 2 3 32 32 H 1.08993 * 109.47657 * 329.97906 * 1 2 3 33 33 H 0.97000 * 120.00190 * 0.02562 * 6 4 3 34 34 H 1.09002 * 109.47153 * 179.97438 * 9 7 6 35 35 H 1.09001 * 109.46832 * 60.00146 * 9 7 6 36 36 H 1.08992 * 109.47399 * 59.99823 * 10 9 7 37 37 H 1.09004 * 109.46724 * 180.02562 * 10 9 7 38 38 H 1.08993 * 109.47662 * 180.02562 * 11 10 9 39 39 H 1.09002 * 109.47075 * 300.00932 * 11 10 9 40 40 H 0.97002 * 120.00110 * 95.00836 * 14 12 11 41 41 H 0.97001 * 119.99778 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.47486 * 300.00065 * 23 7 6 43 43 H 1.09002 * 109.46716 * 180.02562 * 23 7 6 44 44 H 1.08999 * 109.46713 * 0.02562 * 27 26 2 45 45 H 1.08997 * 109.46879 * 60.00015 * 28 27 26 46 46 H 1.09004 * 109.46884 * 180.02562 * 28 27 26 47 47 H 1.08999 * 109.46781 * 300.00316 * 28 27 26 48 48 H 1.09006 * 109.47102 * 60.00566 * 29 27 26 49 49 H 1.09004 * 109.46965 * 179.97438 * 29 27 26 50 50 H 1.08999 * 109.47513 * 299.99681 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8737 2.5027 -0.0006 5 8 0.6859 2.7628 -0.0007 6 7 2.7817 3.4987 -0.0011 7 6 2.3375 4.8948 -0.0022 8 1 1.4251 4.9861 0.5870 9 6 2.0634 5.3416 -1.4396 10 6 3.3443 5.2132 -2.2666 11 6 4.4353 6.0960 -1.6574 12 6 4.7094 5.6492 -0.2200 13 1 5.0399 4.6105 -0.2191 14 7 5.7537 6.4949 0.3636 15 6 7.0734 6.1935 0.1574 16 1 7.3445 5.3322 -0.4350 17 6 8.0629 6.9945 0.7108 18 7 9.3315 6.7046 0.5131 19 14 7.5941 8.4839 1.7361 20 1 7.4682 8.0843 3.1608 21 1 8.6444 9.5255 1.6051 22 1 6.2970 9.0260 1.2575 23 6 3.4285 5.7775 0.6071 24 7 3.5983 0.6788 -0.0054 25 7 3.6299 -0.6084 0.0002 26 7 2.3104 -1.0826 0.0005 27 6 1.8864 -2.4850 0.0006 28 6 2.4296 -3.1821 -1.2483 29 6 2.4287 -3.1816 1.2501 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3634 -0.8902 0.5135 32 1 -0.3634 0.8897 0.5141 33 1 3.7292 3.2912 -0.0014 34 1 1.7325 6.3802 -1.4404 35 1 1.2861 4.7126 -1.8736 36 1 3.6747 4.1746 -2.2657 37 1 3.1491 5.5320 -3.2905 38 1 5.3477 6.0050 -2.2467 39 1 4.1048 7.1347 -1.6581 40 1 5.5102 7.2683 0.8961 41 1 10.0229 7.2645 0.8995 42 1 3.6238 5.4592 1.6311 43 1 3.0979 6.8161 0.6066 44 1 0.7975 -2.5352 -0.0003 45 1 3.5184 -3.1317 -1.2479 46 1 2.1137 -4.2254 -1.2485 47 1 2.0432 -2.6857 -2.1385 48 1 2.0416 -2.6850 2.1399 49 1 2.1128 -4.2249 1.2504 50 1 3.5175 -3.1314 1.2505 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981426986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:24 Heat of formation + Delta-G solvation = 28.702848 kcal Electronic energy + Delta-G solvation = -29677.249822 eV Core-core repulsion = 25740.166583 eV Total energy + Delta-G solvation = -3937.083240 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.33720 -41.06548 -39.17979 -37.37114 -36.26980 -34.51106 -33.93410 -33.24590 -32.10206 -30.86127 -29.89835 -28.64743 -28.29187 -25.42872 -25.05481 -24.46230 -23.26198 -22.44124 -21.65116 -21.22377 -20.24374 -19.46618 -18.78771 -17.48971 -17.27559 -16.87580 -16.67328 -16.38259 -15.80515 -15.55593 -15.37671 -15.26106 -15.06835 -14.89470 -14.66448 -14.30344 -14.16163 -14.00399 -13.95653 -13.69712 -13.25492 -13.21262 -13.08631 -13.05296 -12.99103 -12.93166 -12.83976 -12.54082 -12.39726 -12.35553 -12.00644 -11.92395 -11.80217 -11.61555 -11.50793 -11.16195 -11.06215 -11.02645 -10.88173 -10.27670 -9.91878 -9.28337 -7.99871 -5.33164 0.13338 0.62644 1.07229 1.38664 1.42882 1.49977 2.18423 2.24980 2.50601 3.18033 3.30936 3.31309 3.47170 3.57020 3.73736 3.79943 3.86101 3.93232 3.96983 4.11741 4.19501 4.29455 4.35102 4.51600 4.54749 4.61277 4.63261 4.63728 4.67445 4.71102 4.73050 4.74123 4.81785 4.86058 4.94042 5.07547 5.14917 5.16962 5.18336 5.22287 5.22421 5.37357 5.48818 5.51805 5.58738 5.64951 5.80400 6.24282 6.43795 6.91649 7.10732 7.15625 7.86594 8.06663 9.22064 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014522 B = 0.002789 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.597857 B =10036.404436 C =11138.094963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.131 3.869 3 C -0.136 4.136 4 C 0.607 3.393 5 O -0.555 6.555 6 N -0.706 5.706 7 C 0.157 3.843 8 H 0.099 0.901 9 C -0.119 4.119 10 C -0.107 4.107 11 C -0.128 4.128 12 C 0.177 3.823 13 H 0.035 0.965 14 N -0.750 5.750 15 C -0.225 4.225 16 H 0.051 0.949 17 C -0.069 4.069 18 N -0.987 5.987 19 Si 0.958 3.042 20 H -0.280 1.280 21 H -0.299 1.299 22 H -0.247 1.247 23 C -0.126 4.126 24 N -0.234 5.234 25 N -0.091 5.091 26 N -0.346 5.346 27 C 0.132 3.868 28 C -0.160 4.160 29 C -0.161 4.161 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.405 0.595 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.032 0.968 39 H 0.064 0.936 40 H 0.366 0.634 41 H 0.256 0.744 42 H 0.066 0.934 43 H 0.095 0.905 44 H 0.146 0.854 45 H 0.052 0.948 46 H 0.114 0.886 47 H 0.059 0.941 48 H 0.059 0.941 49 H 0.114 0.886 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.649 -19.359 -1.718 32.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.008 4.008 3 C -0.276 4.276 4 C 0.393 3.607 5 O -0.433 6.433 6 N -0.357 5.357 7 C 0.053 3.947 8 H 0.116 0.884 9 C -0.157 4.157 10 C -0.146 4.146 11 C -0.168 4.168 12 C 0.069 3.931 13 H 0.053 0.947 14 N -0.393 5.393 15 C -0.356 4.356 16 H 0.069 0.931 17 C -0.259 4.259 18 N -0.638 5.638 19 Si 0.785 3.215 20 H -0.206 1.206 21 H -0.226 1.226 22 H -0.172 1.172 23 C -0.165 4.165 24 N -0.106 5.106 25 N -0.070 5.070 26 N -0.133 5.133 27 C 0.033 3.967 28 C -0.218 4.218 29 C -0.218 4.218 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.117 0.883 33 H 0.242 0.758 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.051 0.949 39 H 0.082 0.918 40 H 0.200 0.800 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.114 0.886 44 H 0.164 0.836 45 H 0.071 0.929 46 H 0.132 0.868 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.132 0.868 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -25.805 -19.726 -1.785 32.529 hybrid contribution 0.675 1.016 0.486 1.313 sum -25.130 -18.710 -1.299 31.357 Atomic orbital electron populations 1.20848 0.82011 1.06329 1.05779 1.22427 0.97567 0.85647 0.95189 1.21425 0.89404 0.96030 1.20713 1.16798 0.85406 0.82840 0.75692 1.90705 1.15990 1.83977 1.52668 1.46083 1.10255 1.06134 1.73185 1.20996 0.97452 0.78816 0.97461 0.88353 1.21865 0.97102 1.02692 0.94067 1.21414 0.94817 0.99051 0.99294 1.22071 0.97548 0.99902 0.97235 1.20354 0.87474 0.93252 0.91988 0.94745 1.42759 1.01797 1.32079 1.62659 1.18996 0.82955 1.08293 1.25392 0.93057 1.25536 0.94844 1.02738 1.02826 1.69904 0.99921 1.42350 1.51655 0.85366 0.77979 0.79286 0.78867 1.20608 1.22551 1.17155 1.22052 0.93917 1.01281 0.99205 1.74667 1.20232 1.05032 1.10676 1.81878 0.98339 1.02883 1.23950 1.51020 1.05145 1.08637 1.48468 1.22207 1.02523 0.73105 0.98884 1.22166 1.01869 1.02583 0.95133 1.22175 1.01896 1.02609 0.95155 0.87585 0.87260 0.88307 0.75842 0.89084 0.91472 0.93482 0.91115 0.94861 0.91758 0.80026 0.93483 0.91478 0.88607 0.83627 0.92871 0.86763 0.92211 0.92234 0.86755 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.07 9.41 71.24 0.67 -0.40 16 2 C 0.13 2.67 7.02 41.72 0.29 2.96 16 3 C -0.14 -3.77 6.99 40.82 0.29 -3.49 16 4 C 0.61 17.39 7.78 86.69 0.67 18.06 16 5 O -0.55 -16.14 14.38 -4.00 -0.06 -16.20 16 6 N -0.71 -20.26 4.23 -445.71 -1.89 -22.15 16 7 C 0.16 4.05 2.78 44.99 0.13 4.18 16 8 H 0.10 2.40 7.58 -2.39 -0.02 2.38 16 9 C -0.12 -2.83 5.60 30.59 0.17 -2.66 16 10 C -0.11 -2.97 5.77 30.60 0.18 -2.80 16 11 C -0.13 -4.39 5.50 30.59 0.17 -4.22 16 12 C 0.18 6.67 2.60 44.99 0.12 6.79 16 13 H 0.03 1.43 6.44 -2.39 -0.02 1.41 16 14 N -0.75 -35.12 4.92 -322.94 -1.59 -36.71 16 15 C -0.23 -13.13 10.41 84.03 0.87 -12.26 16 16 H 0.05 3.33 8.06 -2.91 -0.02 3.30 16 17 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 18 N -0.99 -65.06 13.97 21.65 0.30 -64.76 16 19 Si 0.96 46.30 27.73 68.60 1.90 48.20 16 20 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 22 H -0.25 -10.61 6.52 99.48 0.65 -9.96 16 23 C -0.13 -3.66 5.08 30.60 0.16 -3.50 16 24 N -0.23 -7.48 12.04 -50.00 -0.60 -8.08 16 25 N -0.09 -2.60 13.67 37.02 0.51 -2.09 16 26 N -0.35 -6.65 3.28 -313.38 -1.03 -7.68 16 27 C 0.13 1.22 3.68 44.99 0.17 1.39 16 28 C -0.16 -1.35 9.47 71.98 0.68 -0.67 16 29 C -0.16 -1.37 9.47 71.98 0.68 -0.69 16 30 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.11 0.46 7.18 -2.38 -0.02 0.45 16 32 H 0.10 1.54 6.43 -2.39 -0.02 1.52 16 33 H 0.41 12.90 6.55 -92.71 -0.61 12.29 16 34 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.05 1.41 7.60 -2.39 -0.02 1.40 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.37 16.24 5.66 -92.71 -0.52 15.72 16 41 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 42 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.15 0.30 6.79 -2.39 -0.02 0.28 16 45 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.11 0.24 8.14 -2.38 -0.02 0.22 16 47 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 49 H 0.11 0.25 8.14 -2.38 -0.02 0.23 16 50 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -78.96 396.61 3.02 -75.95 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: -0.24 Total: 34.50 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 5.71 Total: -0.97 kcal Atomic # 7 Polarization: -137.18 SS G_CDS: -4.30 Total: -141.48 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.06 Total: -16.20 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.90 Total: 48.20 kcal Total: -78.96 3.02 -75.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981426986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.649 kcal (2) G-P(sol) polarization free energy of solvation -78.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds