Wall clock time and date at job start Tue Mar 31 2020 18:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36595 * 126.57949 * 2 1 4 4 C 1.47531 * 125.76852 * 359.75844 * 3 2 1 5 5 O 1.21589 * 120.00124 * 0.02562 * 4 3 2 6 6 N 1.34773 * 119.99936 * 179.97438 * 4 3 2 7 7 C 1.46502 * 120.00416 * 179.97438 * 6 4 3 8 8 H 1.09003 * 109.46726 * 34.99903 * 7 6 4 9 9 C 1.52997 * 109.46953 * 275.00308 * 7 6 4 10 10 C 1.53002 * 109.46856 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47420 * 59.99715 * 10 9 7 12 12 C 1.53002 * 109.47012 * 300.00393 * 11 10 9 13 13 H 1.09003 * 109.46907 * 299.99594 * 12 11 10 14 14 N 1.46501 * 109.46880 * 179.97438 * 12 11 10 15 15 C 1.36936 * 120.00076 * 84.99749 * 14 12 11 16 16 H 1.08000 * 120.00010 * 359.97438 * 15 14 12 17 17 C 1.38810 * 119.99954 * 179.97438 * 15 14 12 18 18 N 1.31613 * 119.99987 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99955 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47195 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47377 * 120.00034 * 19 17 15 22 22 H 1.48495 * 109.47169 * 240.00022 * 19 17 15 23 23 C 1.52994 * 109.47328 * 59.99336 * 12 11 10 24 24 N 1.34401 * 108.46194 * 180.02562 * 3 2 1 25 25 N 1.28757 * 109.51883 * 0.02562 * 24 3 2 26 26 N 1.34808 * 126.58297 * 180.02562 * 2 1 3 27 27 C 1.46500 * 126.59336 * 359.95495 * 26 2 1 28 28 C 1.52996 * 109.46920 * 120.00309 * 27 26 2 29 29 C 1.53000 * 109.47381 * 240.00363 * 27 26 2 30 30 H 1.08997 * 109.47140 * 89.97557 * 1 2 3 31 31 H 1.08998 * 109.47339 * 209.97445 * 1 2 3 32 32 H 1.09001 * 109.47776 * 329.97522 * 1 2 3 33 33 H 0.97005 * 120.00097 * 359.97438 * 6 4 3 34 34 H 1.09003 * 109.47074 * 299.99382 * 9 7 6 35 35 H 1.09001 * 109.47469 * 59.99915 * 9 7 6 36 36 H 1.09004 * 109.46914 * 180.02562 * 10 9 7 37 37 H 1.09003 * 109.47090 * 299.99759 * 10 9 7 38 38 H 1.08999 * 109.46540 * 59.99720 * 11 10 9 39 39 H 1.08993 * 109.47167 * 179.97438 * 11 10 9 40 40 H 0.97000 * 119.99605 * 264.99590 * 14 12 11 41 41 H 0.97006 * 120.00189 * 179.97438 * 18 17 15 42 42 H 1.09004 * 109.46893 * 179.97438 * 23 12 11 43 43 H 1.09003 * 109.46915 * 60.00263 * 23 12 11 44 44 H 1.08998 * 109.47083 * 0.02562 * 27 26 2 45 45 H 1.09007 * 109.46994 * 180.02562 * 28 27 26 46 46 H 1.08998 * 109.47658 * 299.99773 * 28 27 26 47 47 H 1.08998 * 109.47497 * 59.99948 * 28 27 26 48 48 H 1.09000 * 109.47110 * 59.99654 * 29 27 26 49 49 H 1.08998 * 109.47363 * 180.02562 * 29 27 26 50 50 H 1.08998 * 109.47171 * 300.00141 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8736 2.5027 -0.0050 5 8 0.6859 2.7628 -0.0093 6 7 2.7815 3.4988 -0.0040 7 6 2.3374 4.8949 -0.0095 8 1 1.4226 4.9874 0.5759 9 6 2.0689 5.3388 -1.4488 10 6 1.6044 6.7966 -1.4546 11 6 2.6926 7.6811 -0.8426 12 6 2.9612 7.2370 0.5967 13 1 2.0463 7.3292 1.1821 14 7 4.0036 8.0835 1.1825 15 6 3.6710 9.2828 1.7535 16 1 2.6404 9.6049 1.7717 17 6 4.6587 10.0846 2.3090 18 7 5.9146 9.6919 2.2872 19 14 4.2049 11.7204 3.0886 20 1 2.7380 11.9276 2.9862 21 1 4.6049 11.7151 4.5187 22 1 4.9111 12.8187 2.3813 23 6 3.4255 5.7792 0.6025 24 7 3.5983 0.6790 -0.0006 25 7 3.6298 -0.6082 -0.0015 26 7 2.3104 -1.0825 -0.0005 27 6 1.8864 -2.4848 -0.0002 28 6 2.4284 -3.1817 -1.2497 29 6 2.4298 -3.1817 1.2487 30 1 -0.3633 0.0004 -1.0276 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3635 0.8897 0.5142 33 1 3.7291 3.2914 0.0005 34 1 2.9837 5.2463 -2.0343 35 1 1.2932 4.7091 -1.8847 36 1 1.4127 7.1128 -2.4800 37 1 0.6895 6.8888 -0.8693 38 1 3.6075 7.5888 -1.4279 39 1 2.3619 8.7196 -0.8471 40 1 4.9293 7.7943 1.1658 41 1 6.6049 10.2523 2.6751 42 1 3.6173 5.4631 1.6279 43 1 4.3404 5.6871 0.0171 44 1 0.7976 -2.5351 0.0000 45 1 2.1126 -4.2250 -1.2497 46 1 2.0413 -2.6853 -2.1395 47 1 3.5172 -3.1314 -1.2504 48 1 2.0437 -2.6852 2.1389 49 1 2.1147 -4.2252 1.2487 50 1 3.5186 -3.1314 1.2482 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981426988.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:33 Heat of formation + Delta-G solvation = 44.801985 kcal Electronic energy + Delta-G solvation = -28955.298254 eV Core-core repulsion = 25018.913125 eV Total energy + Delta-G solvation = -3936.385129 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.52559 -39.71393 -37.84587 -36.80912 -34.68067 -33.43658 -33.13874 -31.35039 -31.05504 -29.40525 -28.05650 -27.96256 -27.54312 -24.31384 -23.86471 -23.41467 -21.84373 -21.02342 -20.70097 -20.09083 -19.32755 -17.92032 -17.08137 -16.63887 -16.45591 -16.02292 -15.15926 -14.86727 -14.72322 -14.42494 -14.34319 -13.90968 -13.87352 -13.64848 -13.50950 -13.42670 -13.38820 -13.09315 -12.88539 -12.81047 -12.61496 -12.23831 -12.15606 -12.07020 -12.00243 -11.81859 -11.31161 -10.95425 -10.87693 -10.85389 -10.66017 -10.47636 -10.29203 -10.27232 -10.12875 -10.05715 -9.68033 -9.56131 -9.36445 -8.88840 -8.80348 -6.91354 -5.72617 -3.01005 0.89279 1.58585 1.68441 3.17276 3.26023 3.46250 3.52048 3.54129 3.79589 3.92051 4.16564 4.27551 4.29794 4.53442 4.61985 4.72515 4.89600 4.94751 5.04307 5.06557 5.07269 5.14498 5.16627 5.32477 5.39612 5.43868 5.49792 5.55782 5.60325 5.66730 5.71987 5.75762 5.84562 5.94684 6.03690 6.09531 6.16880 6.20064 6.37741 6.40440 6.58157 6.60803 6.69685 6.79284 7.02540 7.18409 7.50801 7.75291 7.81603 8.22231 8.46103 9.57238 10.15318 10.50058 11.50190 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.022388 B = 0.002083 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.362099 B =13437.137767 C =14000.882528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.122 3.878 3 C -0.105 4.105 4 C 0.605 3.395 5 O -0.540 6.540 6 N -0.707 5.707 7 C 0.150 3.850 8 H 0.089 0.911 9 C -0.124 4.124 10 C -0.114 4.114 11 C -0.137 4.137 12 C 0.184 3.816 13 H 0.049 0.951 14 N -0.724 5.724 15 C -0.235 4.235 16 H 0.071 0.929 17 C -0.016 4.016 18 N -0.933 5.933 19 Si 0.905 3.095 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.130 4.130 24 N -0.203 5.203 25 N -0.065 5.065 26 N -0.358 5.358 27 C 0.144 3.856 28 C -0.163 4.163 29 C -0.164 4.164 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.407 0.593 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.109 0.891 45 H 0.082 0.918 46 H 0.064 0.936 47 H 0.075 0.925 48 H 0.064 0.936 49 H 0.082 0.918 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.296 -28.758 -7.679 31.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.016 4.016 3 C -0.245 4.245 4 C 0.389 3.611 5 O -0.417 6.417 6 N -0.356 5.356 7 C 0.046 3.954 8 H 0.107 0.893 9 C -0.163 4.163 10 C -0.152 4.152 11 C -0.177 4.177 12 C 0.073 3.927 13 H 0.067 0.933 14 N -0.365 5.365 15 C -0.366 4.366 16 H 0.089 0.911 17 C -0.211 4.211 18 N -0.582 5.582 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.220 1.220 22 H -0.220 1.220 23 C -0.169 4.169 24 N -0.076 5.076 25 N -0.044 5.044 26 N -0.145 5.145 27 C 0.042 3.958 28 C -0.220 4.220 29 C -0.221 4.221 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.132 0.868 33 H 0.242 0.758 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.217 0.783 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.127 0.873 45 H 0.101 0.899 46 H 0.083 0.917 47 H 0.094 0.906 48 H 0.083 0.917 49 H 0.101 0.899 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.728 -28.829 -7.580 31.680 hybrid contribution -0.250 0.799 0.377 0.918 sum -10.979 -28.030 -7.203 30.953 Atomic orbital electron populations 1.20723 0.84798 1.05351 1.04607 1.21923 0.96225 0.86390 0.97077 1.21285 0.89048 0.95516 1.18616 1.16713 0.85673 0.82442 0.76260 1.90751 1.15895 1.83598 1.51498 1.45960 1.10120 1.06042 1.73465 1.21074 0.98928 0.78420 0.96985 0.89254 1.21889 1.01248 0.96963 0.96162 1.21483 0.99275 0.94056 1.00430 1.22292 0.97474 0.99240 0.98736 1.20095 0.92923 0.87566 0.92070 0.93349 1.42417 1.05397 1.20022 1.68641 1.19293 0.93247 0.94946 1.29135 0.91086 1.24741 0.95397 0.99035 1.01973 1.69672 0.99286 1.38232 1.50995 0.86135 0.77430 0.83984 0.78775 1.20551 1.21953 1.21953 1.22096 0.97559 0.96203 1.01041 1.74632 1.19034 1.04193 1.09740 1.81927 0.96276 1.03259 1.22970 1.50642 1.06340 1.07217 1.50337 1.21646 1.00465 0.75299 0.98357 1.22157 1.03282 1.00868 0.95740 1.22167 1.03315 1.00875 0.95785 0.89084 0.90860 0.86805 0.75797 0.91994 0.92143 0.92547 0.92163 0.92644 0.91922 0.78302 0.93626 0.91226 0.91587 0.87291 0.89885 0.91715 0.90636 0.91664 0.89882 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 9.40 36.00 0.34 -0.34 16 2 C 0.12 1.23 7.02 -81.88 -0.57 0.65 16 3 C -0.11 -1.35 6.99 -83.55 -0.58 -1.94 16 4 C 0.61 8.54 7.78 -12.47 -0.10 8.44 16 5 O -0.54 -8.41 14.38 5.29 0.08 -8.33 16 6 N -0.71 -9.67 5.07 -54.85 -0.28 -9.95 16 7 C 0.15 2.20 2.45 -67.93 -0.17 2.04 16 8 H 0.09 1.42 7.58 -51.93 -0.39 1.02 16 9 C -0.12 -1.73 5.49 -26.73 -0.15 -1.88 16 10 C -0.11 -1.66 5.92 -26.73 -0.16 -1.82 16 11 C -0.14 -2.45 5.50 -26.73 -0.15 -2.60 16 12 C 0.18 3.64 2.77 -67.93 -0.19 3.45 16 13 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 14 N -0.72 -18.15 5.12 -53.43 -0.27 -18.42 16 15 C -0.23 -6.54 9.93 -15.06 -0.15 -6.69 16 16 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 17 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 18 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 19 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 C -0.13 -2.16 4.86 -26.74 -0.13 -2.29 16 24 N -0.20 -2.75 12.04 32.85 0.40 -2.35 16 25 N -0.07 -0.79 13.67 60.35 0.82 0.03 16 26 N -0.36 -3.26 3.28 -50.41 -0.17 -3.43 16 27 C 0.14 0.72 3.68 -67.93 -0.25 0.47 16 28 C -0.16 -0.68 9.47 37.16 0.35 -0.33 16 29 C -0.16 -0.71 9.47 37.16 0.35 -0.36 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.30 7.18 -51.93 -0.37 -0.07 16 32 H 0.11 1.02 6.44 -51.93 -0.33 0.68 16 33 H 0.41 5.23 8.29 -40.82 -0.34 4.89 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.38 10.21 7.80 -40.82 -0.32 9.89 16 41 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.11 0.29 6.79 -51.93 -0.35 -0.06 16 45 H 0.08 0.15 8.14 -51.92 -0.42 -0.27 16 46 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 47 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 50 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 404.16 15.07 6.09 6.09 Total: -1.00 -33.32 404.16 -7.69 -41.01 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -8.42 Total: 9.17 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -1.65 Total: -3.74 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: 1.23 Total: -61.81 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.08 Total: -8.33 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.32 -7.69 -41.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981426988.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.816 kcal (2) G-P(sol) polarization free energy of solvation -33.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds