Wall clock time and date at job start Tue Mar 31 2020 18:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36595 * 126.57949 * 2 1 4 4 C 1.47531 * 125.76852 * 359.75844 * 3 2 1 5 5 O 1.21589 * 120.00124 * 0.02562 * 4 3 2 6 6 N 1.34773 * 119.99936 * 179.97438 * 4 3 2 7 7 C 1.46502 * 120.00416 * 179.97438 * 6 4 3 8 8 H 1.09003 * 109.46726 * 34.99903 * 7 6 4 9 9 C 1.52997 * 109.46953 * 275.00308 * 7 6 4 10 10 C 1.53002 * 109.46856 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47420 * 59.99715 * 10 9 7 12 12 C 1.53002 * 109.47012 * 300.00393 * 11 10 9 13 13 H 1.09003 * 109.46907 * 299.99594 * 12 11 10 14 14 N 1.46501 * 109.46880 * 179.97438 * 12 11 10 15 15 C 1.36936 * 120.00076 * 84.99749 * 14 12 11 16 16 H 1.08000 * 120.00010 * 359.97438 * 15 14 12 17 17 C 1.38810 * 119.99954 * 179.97438 * 15 14 12 18 18 N 1.31613 * 119.99987 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99955 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47195 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47377 * 120.00034 * 19 17 15 22 22 H 1.48495 * 109.47169 * 240.00022 * 19 17 15 23 23 C 1.52994 * 109.47328 * 59.99336 * 12 11 10 24 24 N 1.34401 * 108.46194 * 180.02562 * 3 2 1 25 25 N 1.28757 * 109.51883 * 0.02562 * 24 3 2 26 26 N 1.34808 * 126.58297 * 180.02562 * 2 1 3 27 27 C 1.46500 * 126.59336 * 359.95495 * 26 2 1 28 28 C 1.52996 * 109.46920 * 120.00309 * 27 26 2 29 29 C 1.53000 * 109.47381 * 240.00363 * 27 26 2 30 30 H 1.08997 * 109.47140 * 89.97557 * 1 2 3 31 31 H 1.08998 * 109.47339 * 209.97445 * 1 2 3 32 32 H 1.09001 * 109.47776 * 329.97522 * 1 2 3 33 33 H 0.97005 * 120.00097 * 359.97438 * 6 4 3 34 34 H 1.09003 * 109.47074 * 299.99382 * 9 7 6 35 35 H 1.09001 * 109.47469 * 59.99915 * 9 7 6 36 36 H 1.09004 * 109.46914 * 180.02562 * 10 9 7 37 37 H 1.09003 * 109.47090 * 299.99759 * 10 9 7 38 38 H 1.08999 * 109.46540 * 59.99720 * 11 10 9 39 39 H 1.08993 * 109.47167 * 179.97438 * 11 10 9 40 40 H 0.97000 * 119.99605 * 264.99590 * 14 12 11 41 41 H 0.97006 * 120.00189 * 179.97438 * 18 17 15 42 42 H 1.09004 * 109.46893 * 179.97438 * 23 12 11 43 43 H 1.09003 * 109.46915 * 60.00263 * 23 12 11 44 44 H 1.08998 * 109.47083 * 0.02562 * 27 26 2 45 45 H 1.09007 * 109.46994 * 180.02562 * 28 27 26 46 46 H 1.08998 * 109.47658 * 299.99773 * 28 27 26 47 47 H 1.08998 * 109.47497 * 59.99948 * 28 27 26 48 48 H 1.09000 * 109.47110 * 59.99654 * 29 27 26 49 49 H 1.08998 * 109.47363 * 180.02562 * 29 27 26 50 50 H 1.08998 * 109.47171 * 300.00141 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8736 2.5027 -0.0050 5 8 0.6859 2.7628 -0.0093 6 7 2.7815 3.4988 -0.0040 7 6 2.3374 4.8949 -0.0095 8 1 1.4226 4.9874 0.5759 9 6 2.0689 5.3388 -1.4488 10 6 1.6044 6.7966 -1.4546 11 6 2.6926 7.6811 -0.8426 12 6 2.9612 7.2370 0.5967 13 1 2.0463 7.3292 1.1821 14 7 4.0036 8.0835 1.1825 15 6 3.6710 9.2828 1.7535 16 1 2.6404 9.6049 1.7717 17 6 4.6587 10.0846 2.3090 18 7 5.9146 9.6919 2.2872 19 14 4.2049 11.7204 3.0886 20 1 2.7380 11.9276 2.9862 21 1 4.6049 11.7151 4.5187 22 1 4.9111 12.8187 2.3813 23 6 3.4255 5.7792 0.6025 24 7 3.5983 0.6790 -0.0006 25 7 3.6298 -0.6082 -0.0015 26 7 2.3104 -1.0825 -0.0005 27 6 1.8864 -2.4848 -0.0002 28 6 2.4284 -3.1817 -1.2497 29 6 2.4298 -3.1817 1.2487 30 1 -0.3633 0.0004 -1.0276 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3635 0.8897 0.5142 33 1 3.7291 3.2914 0.0005 34 1 2.9837 5.2463 -2.0343 35 1 1.2932 4.7091 -1.8847 36 1 1.4127 7.1128 -2.4800 37 1 0.6895 6.8888 -0.8693 38 1 3.6075 7.5888 -1.4279 39 1 2.3619 8.7196 -0.8471 40 1 4.9293 7.7943 1.1658 41 1 6.6049 10.2523 2.6751 42 1 3.6173 5.4631 1.6279 43 1 4.3404 5.6871 0.0171 44 1 0.7976 -2.5351 0.0000 45 1 2.1126 -4.2250 -1.2497 46 1 2.0413 -2.6853 -2.1395 47 1 3.5172 -3.1314 -1.2504 48 1 2.0437 -2.6852 2.1389 49 1 2.1147 -4.2252 1.2487 50 1 3.5186 -3.1314 1.2482 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981426988.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:32 Heat of formation + Delta-G solvation = 22.093101 kcal Electronic energy + Delta-G solvation = -28956.282985 eV Core-core repulsion = 25018.913125 eV Total energy + Delta-G solvation = -3937.369860 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.34872 -40.88542 -39.18833 -37.37233 -36.25226 -34.84561 -33.97092 -32.94169 -32.10923 -30.64153 -29.48002 -28.57531 -28.28273 -25.71420 -25.06030 -24.51910 -23.15379 -22.31378 -21.53196 -21.10335 -20.64437 -19.23400 -18.58441 -17.61164 -17.25764 -17.16879 -16.52132 -16.06357 -15.77593 -15.50853 -15.32917 -15.25969 -15.05705 -14.98115 -14.75013 -14.28786 -14.16645 -14.00787 -13.97025 -13.54973 -13.39515 -13.23631 -13.19978 -12.96938 -12.89833 -12.83299 -12.53612 -12.43182 -12.23348 -12.12184 -12.00774 -11.95994 -11.94043 -11.63624 -11.50417 -11.36570 -11.15728 -10.96196 -10.86229 -10.29776 -9.95398 -8.98802 -7.92547 -5.20610 0.11744 0.60839 1.04753 1.47854 1.48339 1.58462 2.09707 2.22413 2.57662 3.15355 3.30432 3.40833 3.54502 3.64529 3.72510 3.80574 3.88340 3.97522 4.06167 4.11108 4.27485 4.33240 4.42856 4.52880 4.56168 4.59451 4.61238 4.63192 4.64519 4.69626 4.72098 4.74852 4.77962 4.86058 5.03342 5.10144 5.17483 5.17793 5.19587 5.22667 5.25049 5.37607 5.46467 5.52291 5.54821 5.58068 5.68202 6.29921 6.43449 6.90588 7.14063 7.35830 8.12032 8.35433 9.31218 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.022388 B = 0.002083 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.362099 B =13437.137767 C =14000.882528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.132 3.868 3 C -0.133 4.133 4 C 0.606 3.394 5 O -0.557 6.557 6 N -0.705 5.705 7 C 0.161 3.839 8 H 0.080 0.920 9 C -0.116 4.116 10 C -0.104 4.104 11 C -0.127 4.127 12 C 0.178 3.822 13 H 0.041 0.959 14 N -0.737 5.737 15 C -0.234 4.234 16 H 0.075 0.925 17 C -0.079 4.079 18 N -0.970 5.970 19 Si 0.970 3.030 20 H -0.266 1.266 21 H -0.295 1.295 22 H -0.294 1.294 23 C -0.117 4.117 24 N -0.227 5.227 25 N -0.087 5.087 26 N -0.346 5.346 27 C 0.132 3.868 28 C -0.159 4.159 29 C -0.161 4.161 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.410 0.590 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.050 0.950 39 H 0.044 0.956 40 H 0.372 0.628 41 H 0.250 0.750 42 H 0.058 0.942 43 H 0.069 0.931 44 H 0.143 0.857 45 H 0.113 0.887 46 H 0.059 0.941 47 H 0.055 0.945 48 H 0.057 0.943 49 H 0.113 0.887 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.649 -30.824 -8.475 34.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.008 4.008 3 C -0.273 4.273 4 C 0.391 3.609 5 O -0.435 6.435 6 N -0.354 5.354 7 C 0.056 3.944 8 H 0.098 0.902 9 C -0.155 4.155 10 C -0.143 4.143 11 C -0.167 4.167 12 C 0.070 3.930 13 H 0.059 0.941 14 N -0.376 5.376 15 C -0.366 4.366 16 H 0.093 0.907 17 C -0.271 4.271 18 N -0.622 5.622 19 Si 0.800 3.200 20 H -0.190 1.190 21 H -0.222 1.222 22 H -0.222 1.222 23 C -0.156 4.156 24 N -0.100 5.100 25 N -0.066 5.066 26 N -0.133 5.133 27 C 0.032 3.968 28 C -0.217 4.217 29 C -0.218 4.218 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.114 0.886 33 H 0.246 0.754 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.204 0.796 41 H 0.058 0.942 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.161 0.839 45 H 0.131 0.869 46 H 0.078 0.922 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.132 0.868 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.112 -30.944 -8.397 34.641 hybrid contribution 0.413 1.281 0.612 1.479 sum -12.699 -29.663 -7.785 33.193 Atomic orbital electron populations 1.20840 0.82370 1.06211 1.05773 1.22366 0.97479 0.85792 0.95141 1.21280 0.89614 0.95527 1.20888 1.16869 0.85375 0.82986 0.75657 1.90733 1.16421 1.84014 1.52381 1.45871 1.10403 1.05582 1.73584 1.20841 0.97456 0.78748 0.97320 0.90211 1.21820 1.01733 0.96487 0.95425 1.21406 0.97930 0.93571 1.01355 1.22102 0.98477 0.98898 0.97267 1.20309 0.91305 0.88652 0.92765 0.94077 1.42616 1.05930 1.20055 1.69038 1.19650 0.93333 0.95668 1.27913 0.90671 1.25542 0.95455 1.02635 1.03485 1.69824 1.00186 1.39511 1.52630 0.85105 0.77778 0.79779 0.77333 1.19009 1.22236 1.22153 1.21891 0.98365 0.94558 1.00755 1.74597 1.19785 1.04960 1.10644 1.81834 0.98204 1.02840 1.23712 1.50981 1.05158 1.08557 1.48577 1.22203 1.02469 0.73093 0.98992 1.22161 1.01995 1.02513 0.95011 1.22175 1.02017 1.02554 0.95089 0.87552 0.87270 0.88627 0.75375 0.91417 0.91411 0.90460 0.91753 0.93157 0.93721 0.79600 0.94153 0.92351 0.91243 0.83918 0.86884 0.92208 0.92566 0.92368 0.86846 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.07 9.40 71.23 0.67 -0.40 16 2 C 0.13 2.46 7.02 41.72 0.29 2.75 16 3 C -0.13 -3.38 6.99 40.82 0.29 -3.10 16 4 C 0.61 16.92 7.78 86.69 0.67 17.60 16 5 O -0.56 -16.96 14.38 -4.00 -0.06 -17.01 16 6 N -0.71 -19.21 5.07 -445.71 -2.26 -21.47 16 7 C 0.16 4.65 2.45 44.99 0.11 4.76 16 8 H 0.08 2.50 7.58 -2.39 -0.02 2.48 16 9 C -0.12 -3.06 5.49 30.59 0.17 -2.90 16 10 C -0.10 -2.85 5.92 30.60 0.18 -2.67 16 11 C -0.13 -4.50 5.50 30.60 0.17 -4.34 16 12 C 0.18 7.12 2.77 44.99 0.12 7.25 16 13 H 0.04 1.70 8.08 -2.39 -0.02 1.68 16 14 N -0.74 -37.69 5.12 -322.94 -1.65 -39.34 16 15 C -0.23 -13.16 9.93 84.03 0.83 -12.32 16 16 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 17 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 18 N -0.97 -60.40 13.06 21.65 0.28 -60.12 16 19 Si 0.97 47.03 29.55 68.60 2.03 49.06 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 22 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 23 C -0.12 -3.92 4.86 30.59 0.15 -3.77 16 24 N -0.23 -6.22 12.04 -49.99 -0.60 -6.82 16 25 N -0.09 -2.10 13.67 37.02 0.51 -1.60 16 26 N -0.35 -5.79 3.28 -313.41 -1.03 -6.81 16 27 C 0.13 0.95 3.68 44.99 0.17 1.11 16 28 C -0.16 -0.95 9.47 71.98 0.68 -0.27 16 29 C -0.16 -1.03 9.47 71.98 0.68 -0.35 16 30 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.11 0.44 7.18 -2.39 -0.02 0.42 16 32 H 0.10 1.55 6.44 -2.39 -0.02 1.53 16 33 H 0.41 10.66 8.29 -92.70 -0.77 9.89 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.37 20.44 7.80 -92.71 -0.72 19.71 16 41 H 0.25 15.06 8.31 -92.70 -0.77 14.29 16 42 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.14 0.11 6.79 -2.39 -0.02 0.09 16 45 H 0.11 0.01 8.14 -2.38 -0.02 -0.01 16 46 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 49 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 50 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -73.83 404.16 2.32 -71.50 By element: Atomic # 1 Polarization: 33.95 SS G_CDS: -0.54 Total: 33.41 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 5.65 Total: -0.80 kcal Atomic # 7 Polarization: -131.40 SS G_CDS: -4.76 Total: -136.16 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.06 Total: -17.01 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -73.83 2.32 -71.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981426988.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.597 kcal (2) G-P(sol) polarization free energy of solvation -73.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds