Wall clock time and date at job start Tue Mar 31 2020 18:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36599 * 126.58220 * 2 1 4 4 C 1.47527 * 125.76795 * 0.04332 * 3 2 1 5 5 O 1.21601 * 119.99974 * 359.71210 * 4 3 2 6 6 N 1.34773 * 119.99955 * 179.70940 * 4 3 2 7 7 C 1.46497 * 120.00128 * 179.97438 * 6 4 3 8 8 H 1.09002 * 109.47182 * 325.00516 * 7 6 4 9 9 C 1.52997 * 109.46983 * 85.00506 * 7 6 4 10 10 C 1.52996 * 109.47131 * 59.99859 * 9 7 6 11 11 C 1.53002 * 109.46972 * 60.00459 * 10 9 7 12 12 C 1.52997 * 109.46817 * 299.99733 * 11 10 9 13 13 H 1.09001 * 109.47502 * 300.00518 * 12 11 10 14 14 N 1.46500 * 109.47007 * 180.02562 * 12 11 10 15 15 C 1.36936 * 120.00035 * 85.00367 * 14 12 11 16 16 H 1.07997 * 120.00191 * 359.97438 * 15 14 12 17 17 C 1.38812 * 119.99597 * 180.02562 * 15 14 12 18 18 N 1.31625 * 119.99618 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00647 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47450 * 89.99561 * 19 17 15 21 21 H 1.48497 * 109.47342 * 210.00324 * 19 17 15 22 22 H 1.48504 * 109.46820 * 329.99792 * 19 17 15 23 23 C 1.52999 * 109.47704 * 205.00617 * 7 6 4 24 24 N 1.34397 * 108.46106 * 179.77191 * 3 2 1 25 25 N 1.28761 * 109.52215 * 0.23466 * 24 3 2 26 26 N 1.34815 * 126.57986 * 180.17036 * 2 1 3 27 27 C 1.46501 * 126.59697 * 359.96836 * 26 2 1 28 28 C 1.52998 * 109.47426 * 120.27215 * 27 26 2 29 29 C 1.52999 * 109.46954 * 240.27401 * 27 26 2 30 30 H 1.08999 * 109.47405 * 90.02102 * 1 2 3 31 31 H 1.08999 * 109.47319 * 210.02412 * 1 2 3 32 32 H 1.09002 * 109.46994 * 330.01990 * 1 2 3 33 33 H 0.97001 * 120.00193 * 0.02562 * 6 4 3 34 34 H 1.09001 * 109.47289 * 299.99909 * 9 7 6 35 35 H 1.09000 * 109.47611 * 180.02562 * 9 7 6 36 36 H 1.08996 * 109.47452 * 300.00000 * 10 9 7 37 37 H 1.09000 * 109.47054 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.47070 * 179.97438 * 11 10 9 39 39 H 1.08996 * 109.47407 * 59.99513 * 11 10 9 40 40 H 0.97002 * 120.00030 * 265.00025 * 14 12 11 41 41 H 0.97001 * 120.00319 * 179.97438 * 18 17 15 42 42 H 1.08993 * 109.47839 * 180.02562 * 23 7 6 43 43 H 1.09000 * 109.47160 * 59.99903 * 23 7 6 44 44 H 1.09000 * 109.46929 * 0.27155 * 27 26 2 45 45 H 1.09000 * 109.47115 * 60.00055 * 28 27 26 46 46 H 1.08995 * 109.47444 * 180.02562 * 28 27 26 47 47 H 1.09002 * 109.46746 * 300.00536 * 28 27 26 48 48 H 1.09003 * 109.46982 * 60.00152 * 29 27 26 49 49 H 1.09003 * 109.46883 * 179.97438 * 29 27 26 50 50 H 1.09000 * 109.47102 * 299.99648 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0009 5 8 0.6859 2.7628 -0.0035 6 7 2.7816 3.4987 0.0067 7 6 2.3375 4.8947 0.0071 8 1 1.4278 4.9868 -0.5863 9 6 2.0567 5.3402 1.4436 10 6 3.3336 5.2110 2.2764 11 6 4.4275 6.0945 1.6732 12 6 4.7083 5.6490 0.2367 13 1 5.0387 4.6103 0.2364 14 7 5.7561 6.4945 -0.3407 15 6 7.0746 6.1918 -0.1284 16 1 7.3421 5.3300 0.4650 17 6 8.0674 6.9933 -0.6752 18 7 9.3348 6.7026 -0.4707 19 14 7.6049 8.4843 -1.7010 20 1 7.4779 9.6721 -0.8188 21 1 8.6592 8.7326 -2.7168 22 1 6.3098 8.2334 -2.3830 23 6 3.4313 5.7782 -0.5962 24 7 3.5983 0.6789 0.0051 25 7 3.6298 -0.6083 0.0033 26 7 2.3104 -1.0826 -0.0032 27 6 1.8864 -2.4849 -0.0067 28 6 2.4342 -3.1803 -1.2546 29 6 2.4240 -3.1834 1.2439 30 1 -0.3634 -0.0004 -1.0276 31 1 -0.3634 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5135 33 1 3.7292 3.2913 0.0099 34 1 1.2773 4.7109 1.8734 35 1 1.7258 6.3788 1.4439 36 1 3.6640 4.1723 2.2762 37 1 3.1334 5.5279 3.2999 38 1 5.3370 6.0028 2.2668 39 1 4.0970 7.1331 1.6734 40 1 5.5159 7.2687 -0.8735 41 1 10.0286 7.2624 -0.8530 42 1 3.1011 6.8169 -0.5956 43 1 3.6314 5.4609 -1.6196 44 1 0.7975 -2.5352 -0.0113 45 1 3.5231 -3.1300 -1.2501 46 1 2.1184 -4.2235 -1.2574 47 1 2.0512 -2.6826 -2.1455 48 1 2.0336 -2.6880 2.1329 49 1 2.1081 -4.2266 1.2415 50 1 3.5128 -3.1330 1.2484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981426989.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:38 Heat of formation + Delta-G solvation = 52.652753 kcal Electronic energy + Delta-G solvation = -29676.718182 eV Core-core repulsion = 25740.673489 eV Total energy + Delta-G solvation = -3936.044694 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.43348 -39.89537 -37.90501 -36.72618 -34.59428 -33.33487 -32.92209 -31.35918 -31.17466 -29.66037 -28.35805 -27.88474 -27.79813 -24.22579 -23.74436 -23.24066 -22.02556 -20.90841 -20.67600 -20.38559 -18.84770 -17.92731 -17.52621 -16.68347 -16.37719 -15.63298 -15.30369 -14.99059 -14.70959 -14.49281 -14.40320 -13.98001 -13.89699 -13.66043 -13.48209 -13.44657 -13.32849 -12.80562 -12.76039 -12.72547 -12.60086 -12.20529 -12.16113 -12.05946 -11.87553 -11.77548 -11.71405 -11.21193 -11.18012 -10.94556 -10.84553 -10.38835 -10.36911 -10.20299 -10.03761 -9.97503 -9.64859 -9.52068 -9.29179 -8.89298 -8.78767 -7.22155 -5.71931 -3.07410 0.97731 1.68175 1.77602 3.24572 3.31858 3.40984 3.43744 3.48772 3.87366 3.99745 4.24294 4.34498 4.37055 4.59847 4.63378 4.80439 4.93212 4.97235 5.03482 5.08815 5.11691 5.14940 5.15068 5.21205 5.39049 5.50103 5.50971 5.54650 5.57971 5.64630 5.66958 5.68475 5.81751 5.84483 5.93039 6.02458 6.08163 6.21230 6.25060 6.29315 6.45815 6.50708 6.65909 6.69860 6.93438 7.06190 7.57573 7.91748 8.04915 8.26772 8.47129 9.25683 9.98135 10.17795 11.46483 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014520 B = 0.002790 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.977162 B =10034.707188 C =11138.281275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.119 3.881 3 C -0.106 4.106 4 C 0.606 3.394 5 O -0.547 6.547 6 N -0.701 5.701 7 C 0.153 3.847 8 H 0.087 0.913 9 C -0.127 4.127 10 C -0.117 4.117 11 C -0.136 4.136 12 C 0.183 3.817 13 H 0.053 0.947 14 N -0.748 5.748 15 C -0.240 4.240 16 H 0.091 0.909 17 C 0.003 3.997 18 N -0.935 5.935 19 Si 0.884 3.116 20 H -0.285 1.285 21 H -0.292 1.292 22 H -0.277 1.277 23 C -0.138 4.138 24 N -0.198 5.198 25 N -0.062 5.062 26 N -0.359 5.359 27 C 0.144 3.856 28 C -0.163 4.163 29 C -0.164 4.164 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.412 0.588 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.360 0.640 41 H 0.259 0.741 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.108 0.892 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.082 0.918 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.478 -18.989 2.016 29.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.019 4.019 3 C -0.245 4.245 4 C 0.391 3.609 5 O -0.424 6.424 6 N -0.353 5.353 7 C 0.048 3.952 8 H 0.105 0.895 9 C -0.166 4.166 10 C -0.155 4.155 11 C -0.176 4.176 12 C 0.074 3.926 13 H 0.071 0.929 14 N -0.390 5.390 15 C -0.370 4.370 16 H 0.109 0.891 17 C -0.192 4.192 18 N -0.583 5.583 19 Si 0.715 3.285 20 H -0.212 1.212 21 H -0.219 1.219 22 H -0.203 1.203 23 C -0.176 4.176 24 N -0.071 5.071 25 N -0.041 5.041 26 N -0.146 5.146 27 C 0.043 3.957 28 C -0.221 4.221 29 C -0.222 4.222 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.131 0.869 33 H 0.250 0.750 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.193 0.807 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.126 0.874 45 H 0.095 0.905 46 H 0.101 0.899 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.101 0.899 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.574 -19.321 2.064 29.035 hybrid contribution -0.580 1.104 -0.714 1.437 sum -22.154 -18.217 1.350 28.714 Atomic orbital electron populations 1.20701 0.84910 1.05203 1.04517 1.21893 0.96136 0.86454 0.97370 1.21259 0.89105 0.95452 1.18724 1.16714 0.85581 0.82539 0.76108 1.90727 1.15934 1.83714 1.52062 1.46011 1.10589 1.05672 1.73014 1.20974 0.97890 0.79463 0.96857 0.89521 1.21906 0.98136 1.01384 0.95128 1.21508 0.95197 1.00503 0.98284 1.22234 0.97796 0.98730 0.98860 1.20146 0.86942 0.94972 0.90575 0.92928 1.42775 1.02748 1.31385 1.62112 1.19085 0.80579 1.10099 1.27256 0.89147 1.24671 0.95060 0.98886 1.00611 1.69707 0.98424 1.40489 1.49635 0.86552 0.77314 0.84124 0.80548 1.21195 1.21875 1.20318 1.22170 0.95575 0.99665 1.00209 1.74700 1.18879 1.04129 1.09411 1.81981 0.96078 1.03292 1.22773 1.50671 1.06416 1.07167 1.50343 1.21631 1.00351 0.75380 0.98361 1.22158 1.03377 1.00801 0.95749 1.22170 1.03444 1.00800 0.95737 0.89178 0.90940 0.86922 0.75032 0.91927 0.91116 0.92316 0.92714 0.91564 0.92691 0.80694 0.93138 0.90559 0.91085 0.87388 0.90545 0.89936 0.91717 0.91727 0.89940 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.70 9.40 36.00 0.34 -0.36 16 2 C 0.12 1.29 7.02 -81.88 -0.57 0.72 16 3 C -0.11 -1.47 6.99 -83.55 -0.58 -2.05 16 4 C 0.61 8.79 7.78 -12.48 -0.10 8.70 16 5 O -0.55 -8.34 14.38 5.28 0.08 -8.26 16 6 N -0.70 -10.11 4.23 -54.85 -0.23 -10.34 16 7 C 0.15 2.11 2.78 -67.93 -0.19 1.92 16 8 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 9 C -0.13 -1.67 5.60 -26.73 -0.15 -1.82 16 10 C -0.12 -1.67 5.77 -26.73 -0.15 -1.83 16 11 C -0.14 -2.35 5.50 -26.73 -0.15 -2.50 16 12 C 0.18 3.44 2.60 -67.93 -0.18 3.26 16 13 H 0.05 1.04 6.44 -51.93 -0.33 0.71 16 14 N -0.75 -17.53 4.93 -53.42 -0.26 -17.79 16 15 C -0.24 -6.78 10.41 -15.06 -0.16 -6.93 16 16 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 17 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 18 N -0.93 -29.66 13.97 55.49 0.78 -28.89 16 19 Si 0.88 22.31 27.74 -169.99 -4.71 17.59 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 21 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 22 H -0.28 -6.55 6.52 56.52 0.37 -6.19 16 23 C -0.14 -2.12 5.08 -26.73 -0.14 -2.25 16 24 N -0.20 -3.02 12.04 32.85 0.40 -2.63 16 25 N -0.06 -0.85 13.67 60.35 0.82 -0.02 16 26 N -0.36 -3.62 3.28 -50.41 -0.17 -3.79 16 27 C 0.14 0.84 3.68 -67.93 -0.25 0.59 16 28 C -0.16 -0.85 9.47 37.16 0.35 -0.50 16 29 C -0.16 -0.84 9.47 37.16 0.35 -0.49 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.32 7.20 -51.93 -0.37 -0.05 16 32 H 0.11 1.01 6.43 -51.93 -0.33 0.67 16 33 H 0.41 6.30 6.55 -40.82 -0.27 6.03 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.88 7.60 -51.93 -0.39 0.48 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.36 8.31 5.66 -40.82 -0.23 8.08 16 41 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 42 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.11 0.36 6.79 -51.93 -0.35 0.01 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 49 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 50 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 396.62 15.07 5.98 5.98 Total: -1.00 -34.27 396.62 -7.19 -41.46 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -8.19 Total: 10.23 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -1.67 Total: -3.54 kcal Atomic # 7 Polarization: -64.79 SS G_CDS: 1.33 Total: -63.45 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.08 Total: -8.26 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.59 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.27 -7.19 -41.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981426989.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.111 kcal (2) G-P(sol) polarization free energy of solvation -34.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds