Wall clock time and date at job start Tue Mar 31 2020 18:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36599 * 126.58220 * 2 1 4 4 C 1.47527 * 125.76795 * 0.04332 * 3 2 1 5 5 O 1.21601 * 119.99974 * 359.71210 * 4 3 2 6 6 N 1.34773 * 119.99955 * 179.70940 * 4 3 2 7 7 C 1.46497 * 120.00128 * 179.97438 * 6 4 3 8 8 H 1.09002 * 109.47182 * 325.00516 * 7 6 4 9 9 C 1.52997 * 109.46983 * 85.00506 * 7 6 4 10 10 C 1.52996 * 109.47131 * 59.99859 * 9 7 6 11 11 C 1.53002 * 109.46972 * 60.00459 * 10 9 7 12 12 C 1.52997 * 109.46817 * 299.99733 * 11 10 9 13 13 H 1.09001 * 109.47502 * 300.00518 * 12 11 10 14 14 N 1.46500 * 109.47007 * 180.02562 * 12 11 10 15 15 C 1.36936 * 120.00035 * 85.00367 * 14 12 11 16 16 H 1.07997 * 120.00191 * 359.97438 * 15 14 12 17 17 C 1.38812 * 119.99597 * 180.02562 * 15 14 12 18 18 N 1.31625 * 119.99618 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00647 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47450 * 89.99561 * 19 17 15 21 21 H 1.48497 * 109.47342 * 210.00324 * 19 17 15 22 22 H 1.48504 * 109.46820 * 329.99792 * 19 17 15 23 23 C 1.52999 * 109.47704 * 205.00617 * 7 6 4 24 24 N 1.34397 * 108.46106 * 179.77191 * 3 2 1 25 25 N 1.28761 * 109.52215 * 0.23466 * 24 3 2 26 26 N 1.34815 * 126.57986 * 180.17036 * 2 1 3 27 27 C 1.46501 * 126.59697 * 359.96836 * 26 2 1 28 28 C 1.52998 * 109.47426 * 120.27215 * 27 26 2 29 29 C 1.52999 * 109.46954 * 240.27401 * 27 26 2 30 30 H 1.08999 * 109.47405 * 90.02102 * 1 2 3 31 31 H 1.08999 * 109.47319 * 210.02412 * 1 2 3 32 32 H 1.09002 * 109.46994 * 330.01990 * 1 2 3 33 33 H 0.97001 * 120.00193 * 0.02562 * 6 4 3 34 34 H 1.09001 * 109.47289 * 299.99909 * 9 7 6 35 35 H 1.09000 * 109.47611 * 180.02562 * 9 7 6 36 36 H 1.08996 * 109.47452 * 300.00000 * 10 9 7 37 37 H 1.09000 * 109.47054 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.47070 * 179.97438 * 11 10 9 39 39 H 1.08996 * 109.47407 * 59.99513 * 11 10 9 40 40 H 0.97002 * 120.00030 * 265.00025 * 14 12 11 41 41 H 0.97001 * 120.00319 * 179.97438 * 18 17 15 42 42 H 1.08993 * 109.47839 * 180.02562 * 23 7 6 43 43 H 1.09000 * 109.47160 * 59.99903 * 23 7 6 44 44 H 1.09000 * 109.46929 * 0.27155 * 27 26 2 45 45 H 1.09000 * 109.47115 * 60.00055 * 28 27 26 46 46 H 1.08995 * 109.47444 * 180.02562 * 28 27 26 47 47 H 1.09002 * 109.46746 * 300.00536 * 28 27 26 48 48 H 1.09003 * 109.46982 * 60.00152 * 29 27 26 49 49 H 1.09003 * 109.46883 * 179.97438 * 29 27 26 50 50 H 1.09000 * 109.47102 * 299.99648 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0009 5 8 0.6859 2.7628 -0.0035 6 7 2.7816 3.4987 0.0067 7 6 2.3375 4.8947 0.0071 8 1 1.4278 4.9868 -0.5863 9 6 2.0567 5.3402 1.4436 10 6 3.3336 5.2110 2.2764 11 6 4.4275 6.0945 1.6732 12 6 4.7083 5.6490 0.2367 13 1 5.0387 4.6103 0.2364 14 7 5.7561 6.4945 -0.3407 15 6 7.0746 6.1918 -0.1284 16 1 7.3421 5.3300 0.4650 17 6 8.0674 6.9933 -0.6752 18 7 9.3348 6.7026 -0.4707 19 14 7.6049 8.4843 -1.7010 20 1 7.4779 9.6721 -0.8188 21 1 8.6592 8.7326 -2.7168 22 1 6.3098 8.2334 -2.3830 23 6 3.4313 5.7782 -0.5962 24 7 3.5983 0.6789 0.0051 25 7 3.6298 -0.6083 0.0033 26 7 2.3104 -1.0826 -0.0032 27 6 1.8864 -2.4849 -0.0067 28 6 2.4342 -3.1803 -1.2546 29 6 2.4240 -3.1834 1.2439 30 1 -0.3634 -0.0004 -1.0276 31 1 -0.3634 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5135 33 1 3.7292 3.2913 0.0099 34 1 1.2773 4.7109 1.8734 35 1 1.7258 6.3788 1.4439 36 1 3.6640 4.1723 2.2762 37 1 3.1334 5.5279 3.2999 38 1 5.3370 6.0028 2.2668 39 1 4.0970 7.1331 1.6734 40 1 5.5159 7.2687 -0.8735 41 1 10.0286 7.2624 -0.8530 42 1 3.1011 6.8169 -0.5956 43 1 3.6314 5.4609 -1.6196 44 1 0.7975 -2.5352 -0.0113 45 1 3.5231 -3.1300 -1.2501 46 1 2.1184 -4.2235 -1.2574 47 1 2.0512 -2.6826 -2.1455 48 1 2.0336 -2.6880 2.1329 49 1 2.1081 -4.2266 1.2415 50 1 3.5128 -3.1330 1.2484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981426989.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:37 Heat of formation + Delta-G solvation = 28.677072 kcal Electronic energy + Delta-G solvation = -29677.757846 eV Core-core repulsion = 25740.673489 eV Total energy + Delta-G solvation = -3937.084357 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.33782 -41.06569 -39.17877 -37.37198 -36.26964 -34.51151 -33.93502 -33.24530 -32.10185 -30.86136 -29.89850 -28.64804 -28.29219 -25.42854 -25.05513 -24.46334 -23.26185 -22.43954 -21.65193 -21.22435 -20.24276 -19.46679 -18.78798 -17.49244 -17.26547 -16.88832 -16.67443 -16.38232 -15.80099 -15.56051 -15.37585 -15.26031 -15.05445 -14.90125 -14.67370 -14.30650 -14.16462 -13.99641 -13.96001 -13.69008 -13.25522 -13.21268 -13.08600 -13.05410 -12.98406 -12.92550 -12.84296 -12.54073 -12.39839 -12.38381 -11.96419 -11.92457 -11.81081 -11.62803 -11.51420 -11.16323 -11.05893 -11.02843 -10.87520 -10.27439 -9.92235 -9.28372 -7.99857 -5.33184 0.13274 0.62567 1.07172 1.38725 1.42837 1.50012 2.18328 2.24841 2.50604 3.17973 3.30640 3.31699 3.47009 3.56954 3.73641 3.79929 3.86081 3.93203 3.96955 4.11727 4.19463 4.29483 4.35173 4.51561 4.54712 4.61273 4.63200 4.63766 4.67468 4.71116 4.73018 4.74161 4.81827 4.86023 4.94128 5.07647 5.14835 5.16935 5.18533 5.22276 5.22434 5.37469 5.48840 5.51996 5.58763 5.65015 5.80414 6.24269 6.43675 6.91571 7.10709 7.15519 7.86592 8.06650 9.22068 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014520 B = 0.002790 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.977162 B =10034.707188 C =11138.281275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.131 3.869 3 C -0.136 4.136 4 C 0.607 3.393 5 O -0.555 6.555 6 N -0.706 5.706 7 C 0.157 3.843 8 H 0.098 0.902 9 C -0.119 4.119 10 C -0.108 4.108 11 C -0.127 4.127 12 C 0.177 3.823 13 H 0.034 0.966 14 N -0.750 5.750 15 C -0.225 4.225 16 H 0.051 0.949 17 C -0.069 4.069 18 N -0.987 5.987 19 Si 0.958 3.042 20 H -0.278 1.278 21 H -0.299 1.299 22 H -0.248 1.248 23 C -0.126 4.126 24 N -0.234 5.234 25 N -0.091 5.091 26 N -0.346 5.346 27 C 0.132 3.868 28 C -0.160 4.160 29 C -0.161 4.161 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.405 0.595 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.033 0.967 39 H 0.065 0.935 40 H 0.366 0.634 41 H 0.256 0.744 42 H 0.096 0.904 43 H 0.065 0.935 44 H 0.146 0.854 45 H 0.052 0.948 46 H 0.114 0.886 47 H 0.058 0.942 48 H 0.059 0.941 49 H 0.114 0.886 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.658 -19.378 1.523 32.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.008 4.008 3 C -0.276 4.276 4 C 0.393 3.607 5 O -0.433 6.433 6 N -0.356 5.356 7 C 0.053 3.947 8 H 0.116 0.884 9 C -0.157 4.157 10 C -0.146 4.146 11 C -0.167 4.167 12 C 0.069 3.931 13 H 0.052 0.948 14 N -0.393 5.393 15 C -0.356 4.356 16 H 0.069 0.931 17 C -0.259 4.259 18 N -0.638 5.638 19 Si 0.785 3.215 20 H -0.204 1.204 21 H -0.226 1.226 22 H -0.173 1.173 23 C -0.164 4.164 24 N -0.106 5.106 25 N -0.070 5.070 26 N -0.133 5.133 27 C 0.033 3.967 28 C -0.218 4.218 29 C -0.218 4.218 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.117 0.883 33 H 0.242 0.758 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.083 0.917 40 H 0.200 0.800 41 H 0.065 0.935 42 H 0.114 0.886 43 H 0.084 0.916 44 H 0.164 0.836 45 H 0.071 0.929 46 H 0.132 0.868 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.132 0.868 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -25.814 -19.749 1.584 32.541 hybrid contribution 0.678 1.022 -0.489 1.320 sum -25.136 -18.728 1.095 31.364 Atomic orbital electron populations 1.20847 0.82011 1.06351 1.05759 1.22425 0.97566 0.85646 0.95182 1.21426 0.89404 0.96026 1.20722 1.16801 0.85408 0.82843 0.75694 1.90708 1.15982 1.83978 1.52680 1.46079 1.10255 1.06137 1.73177 1.20995 0.97406 0.78817 0.97510 0.88381 1.21865 0.97122 1.02718 0.94016 1.21413 0.94821 0.99048 0.99301 1.22069 0.97534 0.99950 0.97189 1.20353 0.87414 0.93238 0.92054 0.94804 1.42757 1.01792 1.32209 1.62541 1.18997 0.82962 1.08297 1.25376 0.93055 1.25537 0.94834 1.02750 1.02824 1.69905 0.99854 1.42340 1.51735 0.85361 0.77910 0.79667 0.78547 1.20440 1.22626 1.17254 1.22049 0.93953 1.01289 0.99134 1.74666 1.20229 1.05032 1.10675 1.81876 0.98343 1.02884 1.23943 1.51020 1.05144 1.08636 1.48472 1.22206 1.02523 0.73105 0.98884 1.22165 1.01847 1.02598 0.95154 1.22176 1.01919 1.02593 0.95133 0.87636 0.87232 0.88279 0.75848 0.91470 0.89049 0.93509 0.91093 0.94849 0.91660 0.80027 0.93483 0.88574 0.91611 0.83627 0.92875 0.86757 0.92254 0.92191 0.86762 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.07 9.40 71.23 0.67 -0.40 16 2 C 0.13 2.67 7.02 41.72 0.29 2.96 16 3 C -0.14 -3.78 6.99 40.82 0.29 -3.49 16 4 C 0.61 17.41 7.78 86.69 0.67 18.08 16 5 O -0.55 -16.16 14.38 -4.04 -0.06 -16.21 16 6 N -0.71 -20.30 4.23 -445.71 -1.88 -22.18 16 7 C 0.16 4.06 2.78 44.99 0.13 4.18 16 8 H 0.10 2.40 7.58 -2.39 -0.02 2.38 16 9 C -0.12 -2.82 5.60 30.59 0.17 -2.65 16 10 C -0.11 -2.97 5.77 30.59 0.18 -2.79 16 11 C -0.13 -4.37 5.50 30.59 0.17 -4.21 16 12 C 0.18 6.67 2.60 44.99 0.12 6.79 16 13 H 0.03 1.41 6.44 -2.39 -0.02 1.39 16 14 N -0.75 -35.13 4.93 -322.94 -1.59 -36.72 16 15 C -0.23 -13.13 10.41 84.03 0.87 -12.25 16 16 H 0.05 3.33 8.06 -2.91 -0.02 3.31 16 17 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 18 N -0.99 -65.07 13.97 21.65 0.30 -64.77 16 19 Si 0.96 46.30 27.74 68.60 1.90 48.20 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 22 H -0.25 -10.69 6.52 99.48 0.65 -10.04 16 23 C -0.13 -3.66 5.08 30.60 0.16 -3.50 16 24 N -0.23 -7.48 12.04 -49.99 -0.60 -8.08 16 25 N -0.09 -2.60 13.67 37.02 0.51 -2.09 16 26 N -0.35 -6.66 3.28 -313.39 -1.03 -7.69 16 27 C 0.13 1.22 3.68 44.99 0.17 1.39 16 28 C -0.16 -1.37 9.47 71.98 0.68 -0.69 16 29 C -0.16 -1.35 9.47 71.98 0.68 -0.67 16 30 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.11 0.46 7.20 -2.39 -0.02 0.44 16 32 H 0.10 1.54 6.43 -2.39 -0.02 1.52 16 33 H 0.41 12.93 6.55 -92.71 -0.61 12.32 16 34 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.05 1.41 7.60 -2.39 -0.02 1.39 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.37 16.24 5.66 -92.71 -0.52 15.72 16 41 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 42 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.15 0.30 6.79 -2.39 -0.02 0.28 16 45 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.11 0.25 8.14 -2.39 -0.02 0.24 16 47 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 50 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -78.97 396.62 3.02 -75.95 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: -0.24 Total: 34.51 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 5.71 Total: -0.92 kcal Atomic # 7 Polarization: -137.24 SS G_CDS: -4.30 Total: -141.53 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.06 Total: -16.21 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.90 Total: 48.20 kcal Total: -78.97 3.02 -75.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981426989.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.629 kcal (2) G-P(sol) polarization free energy of solvation -78.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds