Wall clock time and date at job start Tue Mar 31 2020 20:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47082 * 2 1 4 4 C 1.52998 * 109.47197 * 120.00216 * 2 1 3 5 5 C 1.52998 * 109.47385 * 64.99939 * 4 2 1 6 6 N 1.46498 * 109.47605 * 180.02562 * 5 4 2 7 7 C 1.34820 * 126.59675 * 124.99454 * 6 5 4 8 8 C 1.36592 * 106.83648 * 179.97438 * 7 6 5 9 9 C 1.47531 * 125.76535 * 179.97438 * 8 7 6 10 10 O 1.21593 * 120.00031 * 6.60931 * 9 8 7 11 11 N 1.34773 * 119.99971 * 186.60309 * 9 8 7 12 12 C 1.48206 * 119.97123 * 176.40839 * 11 9 8 13 13 C 1.47140 * 110.19932 * 102.58836 * 12 11 9 14 14 C 1.53500 * 112.03249 * 58.36272 * 13 12 11 15 15 N 1.43466 * 107.88986 * 281.58501 * 14 13 12 16 16 C 1.36929 * 118.94514 * 273.55694 * 15 14 13 17 17 H 1.08003 * 119.99887 * 34.50782 * 16 15 14 18 18 C 1.38808 * 120.00464 * 214.50502 * 16 15 14 19 19 N 1.31621 * 119.99762 * 355.77019 * 18 16 15 20 20 Si 1.86805 * 120.00199 * 175.76933 * 18 16 15 21 21 H 1.48506 * 109.46921 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47171 * 120.00001 * 20 18 16 23 23 H 1.48500 * 109.47143 * 240.00060 * 20 18 16 24 24 C 1.48861 * 122.11825 * 93.58325 * 15 14 13 25 25 C 1.43623 * 119.96784 * 356.43735 * 11 9 8 26 26 N 1.34391 * 108.46292 * 0.24521 * 8 7 6 27 27 N 1.28762 * 109.52307 * 359.58787 * 26 8 7 28 28 H 1.09001 * 109.47143 * 299.99733 * 1 2 3 29 29 H 1.08998 * 109.47345 * 59.99823 * 1 2 3 30 30 H 1.09000 * 109.47292 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47143 * 240.00267 * 2 1 3 32 32 H 1.09003 * 109.47481 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47175 * 300.00282 * 3 2 1 34 34 H 1.09001 * 109.46914 * 60.00126 * 3 2 1 35 35 H 1.09004 * 109.47277 * 305.00317 * 4 2 1 36 36 H 1.08998 * 109.47340 * 185.00032 * 4 2 1 37 37 H 1.08996 * 109.47228 * 59.99979 * 5 4 2 38 38 H 1.09006 * 109.46828 * 300.00045 * 5 4 2 39 39 H 1.07999 * 126.57662 * 359.95399 * 7 6 5 40 40 H 1.09000 * 109.33195 * 222.76640 * 12 11 9 41 41 H 1.09008 * 109.32788 * 342.41308 * 12 11 9 42 42 H 1.09002 * 109.00700 * 178.82161 * 13 12 11 43 43 H 1.09001 * 109.00769 * 297.59691 * 13 12 11 44 44 H 1.09007 * 109.84262 * 161.96820 * 14 13 12 45 45 H 1.09001 * 109.80054 * 41.18371 * 14 13 12 46 46 H 0.97004 * 119.99513 * 179.97438 * 19 18 16 47 47 H 1.09000 * 109.48195 * 200.64086 * 24 15 14 48 48 H 1.08996 * 109.48859 * 80.60764 * 24 15 14 49 49 H 1.08997 * 108.87747 * 31.44105 * 25 11 9 50 50 H 1.08996 * 108.87508 * 149.87557 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1879 6 7 2.1231 -2.8860 2.3843 7 6 1.3856 -3.6052 3.2541 8 6 2.2425 -4.0665 4.2126 9 6 1.8720 -4.9020 5.3706 10 8 0.7410 -5.3377 5.4689 11 7 2.7871 -5.1826 6.3195 12 6 2.3940 -5.9548 7.5218 13 6 2.8491 -7.3489 7.4015 14 6 4.3703 -7.4443 7.2192 15 7 4.6704 -7.1345 5.8509 16 6 4.6299 -8.1378 4.9200 17 1 3.9050 -8.9329 5.0141 18 6 5.5204 -8.1332 3.8552 19 7 6.3478 -7.1224 3.6937 20 14 5.5446 -9.5615 2.6516 21 1 4.5247 -10.5638 3.0522 22 1 5.2402 -9.0634 1.2861 23 1 6.8886 -10.1931 2.6599 24 6 5.0250 -5.7574 5.4107 25 6 4.1421 -4.7324 6.1647 26 7 3.4792 -3.6255 3.9256 27 7 3.4468 -2.9265 2.8447 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6053 -0.2618 2.1370 36 1 3.1263 -0.6444 1.2951 37 1 2.0699 -2.6550 0.3002 38 1 0.5489 -2.2724 1.1420 39 1 0.3214 -3.7823 3.2030 40 1 2.8460 -5.5027 8.4047 41 1 1.3088 -5.9371 7.6231 42 1 2.5688 -7.8929 8.3035 43 1 2.3587 -7.8097 6.5441 44 1 4.7080 -8.4544 7.4510 45 1 4.8664 -6.7300 7.8763 46 1 6.9704 -7.1193 2.9499 47 1 4.8553 -5.6636 4.3380 48 1 6.0749 -5.5643 5.6309 49 1 4.1408 -3.7935 5.6111 50 1 4.5702 -4.5569 7.1516 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981944689.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:50 Heat of formation + Delta-G solvation = 71.650596 kcal Electronic energy + Delta-G solvation = -30359.763241 eV Core-core repulsion = 26424.542356 eV Total energy + Delta-G solvation = -3935.220885 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.20752 -40.84709 -38.50347 -38.13133 -35.95312 -35.25192 -34.16899 -32.75346 -31.90212 -30.31897 -29.18847 -28.01523 -27.20157 -25.72251 -25.31261 -24.83879 -22.77885 -22.71544 -21.43741 -20.95607 -20.28604 -18.81457 -18.15907 -17.56999 -17.30868 -17.05130 -16.74066 -16.22550 -15.98945 -15.72861 -15.61952 -15.42337 -14.94526 -14.74534 -14.55082 -14.48880 -14.08159 -13.93872 -13.82402 -13.54506 -13.25250 -13.16919 -13.04879 -12.92955 -12.83831 -12.57156 -12.41947 -12.39049 -12.04908 -11.92044 -11.86522 -11.67864 -11.61190 -11.52206 -11.45840 -11.38595 -11.13898 -10.93081 -10.47564 -10.26101 -9.46235 -8.46176 -7.82054 -5.35834 0.21895 0.73538 1.17874 1.39104 1.40707 1.50818 2.10460 2.36050 2.49324 3.24916 3.32046 3.35299 3.71647 3.76143 3.87497 3.95256 4.01742 4.05924 4.13533 4.25283 4.30561 4.32227 4.39529 4.47495 4.57608 4.59668 4.72638 4.73926 4.81186 4.84359 4.87422 4.96146 4.99010 5.05312 5.09413 5.10493 5.26091 5.29465 5.31503 5.42718 5.43866 5.48471 5.53702 5.55918 5.65915 5.87714 5.93792 6.49539 6.51218 6.96699 7.22739 7.24416 8.00357 8.42849 9.20416 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012190 B = 0.003463 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.447273 B = 8084.576509 C = 9381.995216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.088 4.088 3 C -0.149 4.149 4 C -0.121 4.121 5 C 0.110 3.890 6 N -0.348 5.348 7 C 0.103 3.897 8 C -0.124 4.124 9 C 0.598 3.402 10 O -0.580 6.580 11 N -0.572 5.572 12 C 0.126 3.874 13 C -0.154 4.154 14 C 0.157 3.843 15 N -0.609 5.609 16 C -0.261 4.261 17 H 0.049 0.951 18 C -0.039 4.039 19 N -0.924 5.924 20 Si 0.955 3.045 21 H -0.271 1.271 22 H -0.295 1.295 23 H -0.286 1.286 24 C 0.185 3.815 25 C 0.081 3.919 26 N -0.212 5.212 27 N -0.094 5.094 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.105 0.895 38 H 0.139 0.861 39 H 0.236 0.764 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.027 0.973 44 H 0.037 0.963 45 H 0.053 0.947 46 H 0.246 0.754 47 H 0.052 0.948 48 H 0.007 0.993 49 H 0.105 0.895 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.075 16.426 -3.515 21.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.107 4.107 3 C -0.206 4.206 4 C -0.159 4.159 5 C -0.009 4.009 6 N -0.132 5.132 7 C -0.054 4.054 8 C -0.264 4.264 9 C 0.385 3.615 10 O -0.461 6.461 11 N -0.300 5.300 12 C 0.005 3.995 13 C -0.195 4.195 14 C 0.030 3.970 15 N -0.332 5.332 16 C -0.392 4.392 17 H 0.067 0.933 18 C -0.235 4.235 19 N -0.570 5.570 20 Si 0.784 3.216 21 H -0.196 1.196 22 H -0.223 1.223 23 H -0.212 1.212 24 C 0.060 3.940 25 C -0.045 4.045 26 N -0.085 5.085 27 N -0.074 5.074 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.123 0.877 38 H 0.157 0.843 39 H 0.253 0.747 40 H 0.116 0.884 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.046 0.954 44 H 0.056 0.944 45 H 0.071 0.929 46 H 0.056 0.944 47 H 0.070 0.930 48 H 0.025 0.975 49 H 0.122 0.878 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.076 16.732 -3.848 20.991 hybrid contribution -0.320 -1.330 -0.822 1.596 sum -12.396 15.402 -4.670 20.315 Atomic orbital electron populations 1.21961 0.93978 1.02639 1.02465 1.21036 0.96730 0.96307 0.96672 1.21833 1.00901 0.95582 1.02286 1.21893 1.01942 0.92120 0.99977 1.22630 1.02527 0.92991 0.82722 1.50818 1.06748 1.34951 1.20723 1.23742 1.00790 0.92361 0.88554 1.21566 0.90573 1.11297 1.02918 1.17075 0.84339 0.79047 0.80995 1.90679 1.21483 1.55845 1.78091 1.47328 1.09319 1.52666 1.20695 1.20797 1.01058 0.91456 0.86140 1.21620 0.99607 0.97070 1.01177 1.20429 0.92732 0.98383 0.85475 1.43915 1.81338 1.04772 1.03199 1.19275 1.11104 1.03435 1.05420 0.93316 1.25921 0.96467 0.99417 1.01713 1.70171 1.24341 1.30849 1.31599 0.85388 0.77415 0.80261 0.78536 1.19607 1.22277 1.21207 1.21562 0.92887 0.81665 0.97887 1.22397 0.81241 0.99446 1.01441 1.74749 1.20246 1.06345 1.07148 1.81912 0.97412 1.20326 1.07776 0.92535 0.91806 0.91504 0.90124 0.93127 0.91545 0.92736 0.91305 0.91898 0.87721 0.84276 0.74741 0.88413 0.89952 0.89116 0.95396 0.94429 0.92858 0.94403 0.92974 0.97508 0.87802 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.95 71.98 0.64 -0.51 16 2 C -0.09 -0.88 2.92 -10.80 -0.03 -0.91 16 3 C -0.15 -1.58 9.19 71.98 0.66 -0.91 16 4 C -0.12 -1.71 4.89 30.59 0.15 -1.56 16 5 C 0.11 1.62 6.30 86.38 0.54 2.16 16 6 N -0.35 -8.87 3.69 -347.10 -1.28 -10.16 16 7 C 0.10 2.82 11.28 83.85 0.95 3.77 16 8 C -0.12 -4.60 6.68 40.82 0.27 -4.33 16 9 C 0.60 24.27 7.66 86.69 0.66 24.93 16 10 O -0.58 -24.73 16.33 -4.01 -0.07 -24.79 16 11 N -0.57 -22.28 2.45 -834.99 -2.05 -24.33 16 12 C 0.13 4.19 5.69 84.23 0.48 4.67 16 13 C -0.15 -5.64 5.61 28.94 0.16 -5.47 16 14 C 0.16 6.61 5.63 87.11 0.49 7.10 16 15 N -0.61 -31.68 2.53 -698.64 -1.77 -33.45 16 16 C -0.26 -15.17 9.18 84.03 0.77 -14.40 16 17 H 0.05 2.87 7.83 -2.91 -0.02 2.85 16 18 C -0.04 -2.30 5.30 84.86 0.45 -1.85 16 19 N -0.92 -56.47 10.61 21.65 0.23 -56.24 16 20 Si 0.96 47.42 29.56 68.60 2.03 49.45 16 21 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 23 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 24 C 0.19 9.41 4.99 86.56 0.43 9.84 16 25 C 0.08 3.24 4.82 87.55 0.42 3.66 16 26 N -0.21 -8.45 7.83 -50.00 -0.39 -8.85 16 27 N -0.09 -3.33 13.65 37.02 0.51 -2.83 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.07 0.37 6.56 -2.39 -0.02 0.36 16 31 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.14 1.06 6.51 -2.38 -0.02 1.05 16 39 H 0.24 4.38 8.06 -2.91 -0.02 4.36 16 40 H 0.10 2.59 8.05 -2.39 -0.02 2.57 16 41 H 0.08 2.68 7.16 -2.38 -0.02 2.67 16 42 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.03 1.23 7.90 -2.39 -0.02 1.22 16 44 H 0.04 1.61 8.02 -2.38 -0.02 1.59 16 45 H 0.05 2.02 7.59 -2.39 -0.02 2.00 16 46 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 47 H 0.05 3.03 5.81 -2.39 -0.01 3.01 16 48 H 0.01 0.38 7.95 -2.39 -0.02 0.36 16 49 H 0.10 4.17 4.83 -2.42 -0.01 4.16 16 50 H 0.07 2.61 7.73 -2.39 -0.02 2.59 16 Total: -1.00 -77.49 390.80 5.19 -72.30 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.92 Total: 12.69 kcal Atomic # 6 Polarization: 19.15 SS G_CDS: 7.06 Total: 26.20 kcal Atomic # 7 Polarization: -131.10 SS G_CDS: -4.75 Total: -135.85 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.07 Total: -24.79 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -77.49 5.19 -72.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981944689.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.951 kcal (2) G-P(sol) polarization free energy of solvation -77.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds