Wall clock time and date at job start Tue Mar 31 2020 18:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36597 * 126.58393 * 2 1 4 4 C 1.47518 * 125.76952 * 0.02562 * 3 2 1 5 5 O 1.21600 * 119.99859 * 353.82241 * 4 3 2 6 6 N 1.34770 * 120.00287 * 173.82170 * 4 3 2 7 7 C 1.46929 * 120.62854 * 2.64460 * 6 4 3 8 8 C 1.52766 * 109.00848 * 233.58089 * 7 6 4 9 9 C 1.53035 * 109.38565 * 305.59047 * 8 7 6 10 10 N 1.46497 * 109.46085 * 181.25722 * 9 8 7 11 11 C 1.46505 * 120.00280 * 299.93298 * 10 9 8 12 12 C 1.36937 * 120.00031 * 119.93253 * 10 9 8 13 13 H 1.07997 * 120.00337 * 30.82629 * 12 10 9 14 14 C 1.38820 * 120.00029 * 210.83178 * 12 10 9 15 15 N 1.31612 * 119.99880 * 7.01899 * 14 12 10 16 16 Si 1.86804 * 119.99864 * 187.02090 * 14 12 10 17 17 H 1.48494 * 109.47117 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.46835 * 119.99970 * 16 14 12 19 19 H 1.48495 * 109.46853 * 239.99704 * 16 14 12 20 20 C 1.53043 * 109.53867 * 61.23833 * 9 8 7 21 21 C 1.46929 * 120.63340 * 182.92762 * 6 4 3 22 22 N 1.34402 * 108.46040 * 180.23146 * 3 2 1 23 23 N 1.28764 * 109.52216 * 359.78119 * 22 3 2 24 24 N 1.34822 * 126.57864 * 179.84987 * 2 1 3 25 25 C 1.46500 * 126.59343 * 0.03886 * 24 2 1 26 26 C 1.52999 * 109.46775 * 239.71105 * 25 24 2 27 27 C 1.52990 * 109.47093 * 119.71192 * 25 24 2 28 28 H 1.08998 * 109.46993 * 270.15218 * 1 2 3 29 29 H 1.08999 * 109.46696 * 30.15292 * 1 2 3 30 30 H 1.09003 * 109.47035 * 150.15054 * 1 2 3 31 31 H 1.08990 * 109.58658 * 353.41924 * 7 6 4 32 32 H 1.08999 * 109.58675 * 113.84701 * 7 6 4 33 33 H 1.08998 * 109.56315 * 185.55215 * 8 7 6 34 34 H 1.09009 * 109.35543 * 65.49943 * 8 7 6 35 35 H 1.09000 * 109.46217 * 301.21620 * 9 8 7 36 36 H 1.08998 * 109.46996 * 85.21706 * 11 10 9 37 37 H 1.08996 * 109.47425 * 205.22100 * 11 10 9 38 38 H 1.09005 * 109.46830 * 325.22145 * 11 10 9 39 39 H 0.96998 * 119.99984 * 180.02562 * 15 14 12 40 40 H 1.09002 * 109.49678 * 178.68229 * 20 9 8 41 41 H 1.08998 * 109.49604 * 58.58949 * 20 9 8 42 42 H 1.09003 * 109.58307 * 246.15463 * 21 6 4 43 43 H 1.08997 * 109.58780 * 6.43569 * 21 6 4 44 44 H 1.09000 * 109.47002 * 359.70863 * 25 24 2 45 45 H 1.08999 * 109.47156 * 60.00085 * 26 25 24 46 46 H 1.09002 * 109.47334 * 180.02562 * 26 25 24 47 47 H 1.08999 * 109.47599 * 299.99959 * 26 25 24 48 48 H 1.09006 * 109.47344 * 180.02562 * 27 25 24 49 49 H 1.09004 * 109.47525 * 300.00005 * 27 25 24 50 50 H 1.09000 * 109.47465 * 59.99955 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8739 2.5026 0.0005 5 8 0.6919 2.7646 -0.1123 6 7 2.7754 3.4965 0.1261 7 6 4.2120 3.1986 0.2052 8 6 4.7895 3.8612 1.4547 9 6 4.4571 5.3549 1.4373 10 7 5.0358 5.9975 2.6197 11 6 4.6350 5.5625 3.9600 12 6 5.9516 7.0049 2.4723 13 1 5.9017 7.6588 1.6142 14 6 6.9442 7.1857 3.4258 15 7 7.0917 6.3092 4.3964 16 14 8.0704 8.6731 3.3311 17 1 7.7006 9.4999 2.1544 18 1 7.9282 9.4811 4.5689 19 1 9.4780 8.2202 3.1947 20 6 2.9381 5.5413 1.4478 21 6 2.3400 4.8982 0.1926 22 7 3.5985 0.6788 -0.0052 23 7 3.6299 -0.6085 -0.0037 24 7 2.3104 -1.0827 0.0028 25 6 1.8863 -2.4849 0.0057 26 6 2.4344 -3.1809 1.2532 27 6 2.4237 -3.1828 -1.2452 28 1 -0.3633 0.0027 1.0276 29 1 -0.3633 0.8886 -0.5162 30 1 -0.3633 -0.8914 -0.5115 31 1 4.3588 2.1202 0.2642 32 1 4.7156 3.5902 -0.6785 33 1 5.8714 3.7294 1.4708 34 1 4.3532 3.4017 2.3417 35 1 4.8724 5.8089 0.5376 36 1 5.2409 4.7079 4.2610 37 1 4.7824 6.3793 4.6665 38 1 3.5832 5.2764 3.9497 39 1 7.7850 6.4357 5.0629 40 1 2.7023 6.6055 1.4590 41 1 2.5194 5.0661 2.3349 42 1 2.6879 5.4313 -0.6922 43 1 1.2519 4.9410 0.2407 44 1 0.7975 -2.5352 0.0105 45 1 2.0516 -2.6837 2.1444 46 1 2.1193 -4.2243 1.2552 47 1 3.5232 -3.1306 1.2485 48 1 2.1078 -4.2261 -1.2434 49 1 2.0333 -2.6870 -2.1340 50 1 3.5125 -3.1326 -1.2500 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985719065.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:09 Heat of formation + Delta-G solvation = 91.048490 kcal Electronic energy + Delta-G solvation = -30092.183474 eV Core-core repulsion = 26157.803744 eV Total energy + Delta-G solvation = -3934.379730 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.47427 -39.64133 -37.37601 -36.75416 -34.96345 -33.22002 -32.22518 -31.39723 -30.29463 -29.66587 -27.96302 -27.87021 -25.89000 -25.03871 -24.27681 -23.24107 -22.42712 -21.54135 -20.53569 -19.80908 -18.51262 -17.41237 -16.66390 -16.41333 -16.33758 -15.89492 -14.97315 -14.90851 -14.82781 -14.48295 -13.89328 -13.80096 -13.68878 -13.54854 -13.35263 -13.24709 -13.17219 -12.95994 -12.79634 -12.71948 -12.46535 -12.13682 -12.03635 -12.00304 -11.67741 -11.49689 -11.46424 -10.98659 -10.82630 -10.71679 -10.50869 -10.36489 -10.27604 -10.10399 -9.97679 -9.88495 -9.61170 -9.28047 -9.23120 -8.47069 -8.28709 -6.54438 -5.68096 -3.18617 1.00020 1.67932 1.78538 3.17265 3.38360 3.40928 3.48113 3.50159 3.88277 4.01139 4.25785 4.36357 4.37602 4.53729 4.57277 4.81977 4.97971 5.00345 5.14153 5.16778 5.20477 5.28652 5.41414 5.41963 5.47820 5.52572 5.59184 5.66749 5.69204 5.70389 5.75676 5.87870 6.01672 6.11793 6.26569 6.31726 6.43417 6.57555 6.59584 6.68638 6.86055 6.94960 7.13484 7.19659 7.45039 7.61838 7.78177 7.87462 7.90720 8.31880 8.53451 9.32399 9.94241 10.48812 11.38056 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.019486 B = 0.002677 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.606357 B =10457.159349 C =11221.208870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.119 3.881 3 C -0.096 4.096 4 C 0.602 3.398 5 O -0.552 6.552 6 N -0.585 5.585 7 C 0.070 3.930 8 C -0.139 4.139 9 C 0.177 3.823 10 N -0.594 5.594 11 C 0.164 3.836 12 C -0.255 4.255 13 H 0.064 0.936 14 C 0.006 3.994 15 N -0.905 5.905 16 Si 0.902 3.098 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.290 1.290 20 C -0.145 4.145 21 C 0.115 3.885 22 N -0.199 5.199 23 N -0.066 5.066 24 N -0.356 5.356 25 C 0.144 3.856 26 C -0.163 4.163 27 C -0.163 4.163 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.072 0.928 31 H 0.136 0.864 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.017 0.983 37 H 0.049 0.951 38 H -0.006 1.006 39 H 0.251 0.749 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.109 0.891 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.075 0.925 48 H 0.082 0.918 49 H 0.063 0.937 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.272 -20.163 -10.235 26.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.018 4.018 3 C -0.234 4.234 4 C 0.388 3.612 5 O -0.431 6.431 6 N -0.316 5.316 7 C -0.054 4.054 8 C -0.180 4.180 9 C 0.069 3.931 10 N -0.316 5.316 11 C 0.019 3.981 12 C -0.385 4.385 13 H 0.082 0.918 14 C -0.193 4.193 15 N -0.549 5.549 16 Si 0.732 3.268 17 H -0.203 1.203 18 H -0.217 1.217 19 H -0.217 1.217 20 C -0.185 4.185 21 C -0.007 4.007 22 N -0.071 5.071 23 N -0.044 5.044 24 N -0.144 5.144 25 C 0.042 3.958 26 C -0.221 4.221 27 C -0.221 4.221 28 H 0.108 0.892 29 H 0.133 0.867 30 H 0.091 0.909 31 H 0.152 0.848 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.035 0.965 37 H 0.068 0.932 38 H 0.012 0.988 39 H 0.062 0.938 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.104 0.896 44 H 0.127 0.873 45 H 0.084 0.916 46 H 0.101 0.899 47 H 0.094 0.906 48 H 0.101 0.899 49 H 0.083 0.917 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.261 -20.444 -10.136 26.393 hybrid contribution -0.033 0.900 0.223 0.928 sum -13.294 -19.544 -9.913 25.632 Atomic orbital electron populations 1.20729 0.84866 1.05317 1.04600 1.21870 0.96158 0.86287 0.97491 1.21225 0.88864 0.95433 1.17927 1.16761 0.85180 0.82498 0.76767 1.90706 1.16227 1.83365 1.52765 1.47971 1.07732 1.06217 1.69656 1.22842 0.78207 1.05550 0.98786 1.22329 1.01221 0.98161 0.96245 1.20358 0.90364 0.90809 0.91572 1.43872 1.47935 1.39955 0.99811 1.20684 0.92025 0.98844 0.86548 1.19216 1.04970 1.05703 1.08573 0.91792 1.25221 0.97122 0.98041 0.98927 1.70035 1.34172 1.34816 1.15868 0.86217 0.80728 0.82396 0.77411 1.20276 1.21726 1.21695 1.22441 0.99178 1.00458 0.96454 1.21701 1.00498 0.79741 0.98779 1.74220 1.18522 1.03443 1.10919 1.81971 0.96388 1.03805 1.22271 1.50621 1.06318 1.07156 1.50255 1.21640 1.00408 0.75365 0.98340 1.22161 1.03350 1.00797 0.95807 1.22165 1.03369 1.00813 0.95747 0.89170 0.86733 0.90899 0.84793 0.91994 0.90681 0.92670 0.92003 0.96489 0.93234 0.98782 0.93843 0.90925 0.92109 0.91594 0.89576 0.87342 0.91628 0.89942 0.90569 0.89947 0.91748 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 9.47 36.01 0.34 -0.43 16 2 C 0.12 1.36 7.02 -81.87 -0.57 0.78 16 3 C -0.10 -1.40 6.77 -83.55 -0.57 -1.96 16 4 C 0.60 9.75 7.69 -12.48 -0.10 9.66 16 5 O -0.55 -9.37 14.12 5.28 0.07 -9.29 16 6 N -0.59 -9.62 2.98 -174.26 -0.52 -10.14 16 7 C 0.07 1.16 6.26 -3.93 -0.02 1.14 16 8 C -0.14 -2.74 5.32 -26.83 -0.14 -2.88 16 9 C 0.18 3.73 2.56 -67.89 -0.17 3.55 16 10 N -0.59 -15.16 2.79 -173.43 -0.48 -15.65 16 11 C 0.16 4.17 8.10 59.85 0.49 4.65 16 12 C -0.25 -7.09 9.49 -15.06 -0.14 -7.23 16 13 H 0.06 1.75 7.84 -52.49 -0.41 1.34 16 14 C 0.01 0.16 5.14 -17.43 -0.09 0.07 16 15 N -0.90 -26.82 10.95 55.49 0.61 -26.21 16 16 Si 0.90 22.11 29.56 -169.99 -5.02 17.08 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 C -0.15 -2.64 5.30 -26.61 -0.14 -2.78 16 21 C 0.12 1.83 6.43 -3.71 -0.02 1.81 16 22 N -0.20 -3.04 8.64 32.85 0.28 -2.75 16 23 N -0.07 -0.90 13.67 60.35 0.82 -0.07 16 24 N -0.36 -3.67 3.28 -50.41 -0.17 -3.83 16 25 C 0.14 0.86 3.68 -67.94 -0.25 0.61 16 26 C -0.16 -0.89 9.47 37.16 0.35 -0.54 16 27 C -0.16 -0.82 9.47 37.15 0.35 -0.47 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.11 1.12 6.33 -51.93 -0.33 0.79 16 30 H 0.07 0.35 7.19 -51.93 -0.37 -0.02 16 31 H 0.14 2.24 3.64 -128.35 -0.47 1.77 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 34 H 0.05 1.15 7.72 -51.92 -0.40 0.75 16 35 H 0.06 1.32 7.89 -51.93 -0.41 0.91 16 36 H 0.02 0.46 7.76 -51.93 -0.40 0.06 16 37 H 0.05 1.35 7.06 -51.93 -0.37 0.99 16 38 H -0.01 -0.14 6.48 -51.93 -0.34 -0.48 16 39 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.06 1.17 6.75 -51.93 -0.35 0.82 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.09 1.34 7.02 -51.93 -0.36 0.98 16 44 H 0.11 0.39 6.79 -51.93 -0.35 0.03 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 47 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 49 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 389.83 15.07 5.87 5.87 Total: -1.00 -33.24 389.83 -7.57 -40.81 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -8.35 Total: -1.80 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -0.69 Total: 5.97 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: 0.55 Total: -58.66 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.07 Total: -9.29 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.24 -7.57 -40.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985719065.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.862 kcal (2) G-P(sol) polarization free energy of solvation -33.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds