Wall clock time and date at job start Tue Mar 31 2020 18:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36597 * 126.58393 * 2 1 4 4 C 1.47518 * 125.76952 * 0.02562 * 3 2 1 5 5 O 1.21600 * 119.99859 * 353.82241 * 4 3 2 6 6 N 1.34770 * 120.00287 * 173.82170 * 4 3 2 7 7 C 1.46929 * 120.62854 * 2.64460 * 6 4 3 8 8 C 1.52766 * 109.00848 * 233.58089 * 7 6 4 9 9 C 1.53035 * 109.38565 * 305.59047 * 8 7 6 10 10 N 1.46497 * 109.46085 * 181.25722 * 9 8 7 11 11 C 1.46505 * 120.00280 * 299.93298 * 10 9 8 12 12 C 1.36937 * 120.00031 * 119.93253 * 10 9 8 13 13 H 1.07997 * 120.00337 * 30.82629 * 12 10 9 14 14 C 1.38820 * 120.00029 * 210.83178 * 12 10 9 15 15 N 1.31612 * 119.99880 * 7.01899 * 14 12 10 16 16 Si 1.86804 * 119.99864 * 187.02090 * 14 12 10 17 17 H 1.48494 * 109.47117 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.46835 * 119.99970 * 16 14 12 19 19 H 1.48495 * 109.46853 * 239.99704 * 16 14 12 20 20 C 1.53043 * 109.53867 * 61.23833 * 9 8 7 21 21 C 1.46929 * 120.63340 * 182.92762 * 6 4 3 22 22 N 1.34402 * 108.46040 * 180.23146 * 3 2 1 23 23 N 1.28764 * 109.52216 * 359.78119 * 22 3 2 24 24 N 1.34822 * 126.57864 * 179.84987 * 2 1 3 25 25 C 1.46500 * 126.59343 * 0.03886 * 24 2 1 26 26 C 1.52999 * 109.46775 * 239.71105 * 25 24 2 27 27 C 1.52990 * 109.47093 * 119.71192 * 25 24 2 28 28 H 1.08998 * 109.46993 * 270.15218 * 1 2 3 29 29 H 1.08999 * 109.46696 * 30.15292 * 1 2 3 30 30 H 1.09003 * 109.47035 * 150.15054 * 1 2 3 31 31 H 1.08990 * 109.58658 * 353.41924 * 7 6 4 32 32 H 1.08999 * 109.58675 * 113.84701 * 7 6 4 33 33 H 1.08998 * 109.56315 * 185.55215 * 8 7 6 34 34 H 1.09009 * 109.35543 * 65.49943 * 8 7 6 35 35 H 1.09000 * 109.46217 * 301.21620 * 9 8 7 36 36 H 1.08998 * 109.46996 * 85.21706 * 11 10 9 37 37 H 1.08996 * 109.47425 * 205.22100 * 11 10 9 38 38 H 1.09005 * 109.46830 * 325.22145 * 11 10 9 39 39 H 0.96998 * 119.99984 * 180.02562 * 15 14 12 40 40 H 1.09002 * 109.49678 * 178.68229 * 20 9 8 41 41 H 1.08998 * 109.49604 * 58.58949 * 20 9 8 42 42 H 1.09003 * 109.58307 * 246.15463 * 21 6 4 43 43 H 1.08997 * 109.58780 * 6.43569 * 21 6 4 44 44 H 1.09000 * 109.47002 * 359.70863 * 25 24 2 45 45 H 1.08999 * 109.47156 * 60.00085 * 26 25 24 46 46 H 1.09002 * 109.47334 * 180.02562 * 26 25 24 47 47 H 1.08999 * 109.47599 * 299.99959 * 26 25 24 48 48 H 1.09006 * 109.47344 * 180.02562 * 27 25 24 49 49 H 1.09004 * 109.47525 * 300.00005 * 27 25 24 50 50 H 1.09000 * 109.47465 * 59.99955 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8739 2.5026 0.0005 5 8 0.6919 2.7646 -0.1123 6 7 2.7754 3.4965 0.1261 7 6 4.2120 3.1986 0.2052 8 6 4.7895 3.8612 1.4547 9 6 4.4571 5.3549 1.4373 10 7 5.0358 5.9975 2.6197 11 6 4.6350 5.5625 3.9600 12 6 5.9516 7.0049 2.4723 13 1 5.9017 7.6588 1.6142 14 6 6.9442 7.1857 3.4258 15 7 7.0917 6.3092 4.3964 16 14 8.0704 8.6731 3.3311 17 1 7.7006 9.4999 2.1544 18 1 7.9282 9.4811 4.5689 19 1 9.4780 8.2202 3.1947 20 6 2.9381 5.5413 1.4478 21 6 2.3400 4.8982 0.1926 22 7 3.5985 0.6788 -0.0052 23 7 3.6299 -0.6085 -0.0037 24 7 2.3104 -1.0827 0.0028 25 6 1.8863 -2.4849 0.0057 26 6 2.4344 -3.1809 1.2532 27 6 2.4237 -3.1828 -1.2452 28 1 -0.3633 0.0027 1.0276 29 1 -0.3633 0.8886 -0.5162 30 1 -0.3633 -0.8914 -0.5115 31 1 4.3588 2.1202 0.2642 32 1 4.7156 3.5902 -0.6785 33 1 5.8714 3.7294 1.4708 34 1 4.3532 3.4017 2.3417 35 1 4.8724 5.8089 0.5376 36 1 5.2409 4.7079 4.2610 37 1 4.7824 6.3793 4.6665 38 1 3.5832 5.2764 3.9497 39 1 7.7850 6.4357 5.0629 40 1 2.7023 6.6055 1.4590 41 1 2.5194 5.0661 2.3349 42 1 2.6879 5.4313 -0.6922 43 1 1.2519 4.9410 0.2407 44 1 0.7975 -2.5352 0.0105 45 1 2.0516 -2.6837 2.1444 46 1 2.1193 -4.2243 1.2552 47 1 3.5232 -3.1306 1.2485 48 1 2.1078 -4.2261 -1.2434 49 1 2.0333 -2.6870 -2.1340 50 1 3.5125 -3.1326 -1.2500 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985719065.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:08 Heat of formation + Delta-G solvation = 70.483647 kcal Electronic energy + Delta-G solvation = -30093.075233 eV Core-core repulsion = 26157.803744 eV Total energy + Delta-G solvation = -3935.271488 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.42153 -40.94690 -38.91267 -37.43190 -36.67569 -34.11412 -33.87542 -32.63883 -31.63010 -31.30719 -28.84906 -28.27183 -28.00927 -26.55569 -25.13363 -24.64967 -23.91426 -22.96994 -21.32837 -21.17510 -19.90128 -18.75358 -18.35384 -17.40230 -17.27600 -17.15277 -16.91184 -16.03055 -15.78897 -15.52160 -15.39632 -15.13254 -15.04934 -14.78659 -14.53309 -14.27618 -14.24280 -13.97402 -13.88558 -13.71062 -13.32501 -13.23070 -13.19040 -13.06401 -12.86638 -12.78282 -12.70701 -12.53069 -12.46510 -12.18816 -12.17191 -12.02483 -11.92392 -11.79820 -11.38402 -11.22289 -11.17459 -10.73528 -10.59444 -10.23512 -9.61887 -8.63863 -7.83336 -5.36938 0.11868 0.57080 1.05014 1.46506 1.47281 1.58216 1.95259 2.20233 2.51006 3.08170 3.26915 3.32636 3.50969 3.63954 3.67764 3.81562 3.89641 3.98539 4.09470 4.19774 4.22147 4.26601 4.41246 4.46598 4.61119 4.62006 4.63534 4.64012 4.72645 4.76035 4.77861 4.83253 4.84948 4.93979 5.03654 5.06883 5.09448 5.19017 5.20848 5.21767 5.34629 5.40516 5.52428 5.56304 5.62322 5.66798 5.74603 6.33689 6.40330 6.84682 7.11134 7.17853 7.87891 8.37799 9.21632 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.019486 B = 0.002677 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.606357 B =10457.159349 C =11221.208870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.133 3.867 3 C -0.129 4.129 4 C 0.602 3.398 5 O -0.561 6.561 6 N -0.592 5.592 7 C 0.083 3.917 8 C -0.126 4.126 9 C 0.173 3.827 10 N -0.610 5.610 11 C 0.182 3.818 12 C -0.263 4.263 13 H 0.069 0.931 14 C -0.050 4.050 15 N -0.938 5.938 16 Si 0.970 3.030 17 H -0.264 1.264 18 H -0.292 1.292 19 H -0.292 1.292 20 C -0.131 4.131 21 C 0.122 3.878 22 N -0.225 5.225 23 N -0.087 5.087 24 N -0.342 5.342 25 C 0.132 3.868 26 C -0.161 4.161 27 C -0.159 4.159 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.140 0.860 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.037 0.963 35 H 0.061 0.939 36 H -0.010 1.010 37 H 0.023 0.977 38 H 0.018 0.982 39 H 0.248 0.752 40 H 0.075 0.925 41 H 0.048 0.952 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.145 0.855 45 H 0.056 0.944 46 H 0.114 0.886 47 H 0.054 0.946 48 H 0.113 0.887 49 H 0.060 0.940 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.322 -21.599 -11.768 29.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.006 4.006 3 C -0.268 4.268 4 C 0.389 3.611 5 O -0.441 6.441 6 N -0.323 5.323 7 C -0.041 4.041 8 C -0.166 4.166 9 C 0.066 3.934 10 N -0.332 5.332 11 C 0.037 3.963 12 C -0.394 4.394 13 H 0.086 0.914 14 C -0.245 4.245 15 N -0.584 5.584 16 Si 0.798 3.202 17 H -0.188 1.188 18 H -0.218 1.218 19 H -0.219 1.219 20 C -0.171 4.171 21 C 0.000 4.000 22 N -0.097 5.097 23 N -0.065 5.065 24 N -0.130 5.130 25 C 0.033 3.967 26 C -0.219 4.219 27 C -0.217 4.217 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.131 0.869 31 H 0.157 0.843 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.009 0.991 37 H 0.042 0.958 38 H 0.036 0.964 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.101 0.899 43 H 0.112 0.888 44 H 0.163 0.837 45 H 0.075 0.925 46 H 0.132 0.868 47 H 0.073 0.927 48 H 0.132 0.868 49 H 0.079 0.921 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.330 -21.912 -11.705 29.192 hybrid contribution 0.510 1.197 0.678 1.467 sum -14.820 -20.714 -11.027 27.755 Atomic orbital electron populations 1.20866 0.82186 1.06512 1.05678 1.22344 0.97504 0.85557 0.95214 1.21248 0.89531 0.95514 1.20538 1.16964 0.84943 0.83077 0.76115 1.90691 1.16424 1.83757 1.53216 1.47995 1.07498 1.06597 1.70179 1.22690 0.78549 1.05640 0.97266 1.22115 0.99750 0.97465 0.97260 1.20542 0.92001 0.91051 0.89764 1.44105 1.47997 1.40188 1.00882 1.20372 0.92829 0.96691 0.86384 1.19556 1.05077 1.06295 1.08435 0.91359 1.26001 0.98801 1.00896 0.98838 1.70204 1.34864 1.36684 1.16640 0.85165 0.78336 0.79143 0.77575 1.18821 1.21849 1.21922 1.22241 0.96676 1.00805 0.97357 1.21655 1.00759 0.79587 0.98014 1.74078 1.19322 1.04353 1.11935 1.81871 0.98404 1.03206 1.23002 1.50975 1.05054 1.08575 1.48371 1.22222 1.02528 0.73010 0.98972 1.22173 1.01958 1.02582 0.95146 1.22170 1.02039 1.02520 0.94984 0.87892 0.88311 0.86916 0.84332 0.90979 0.93007 0.94385 0.92088 0.99134 0.95782 0.96351 0.94313 0.90669 0.93339 0.89856 0.88770 0.83744 0.92480 0.86760 0.92676 0.86838 0.92064 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.22 9.47 71.24 0.67 -0.54 16 2 C 0.13 2.78 7.02 41.72 0.29 3.07 16 3 C -0.13 -3.70 6.77 40.81 0.28 -3.42 16 4 C 0.60 19.06 7.69 86.69 0.67 19.73 16 5 O -0.56 -18.37 14.12 -4.03 -0.06 -18.43 16 6 N -0.59 -19.10 2.98 -823.51 -2.45 -21.56 16 7 C 0.08 2.76 6.26 86.22 0.54 3.30 16 8 C -0.13 -5.08 5.32 30.53 0.16 -4.91 16 9 C 0.17 7.34 2.56 45.02 0.12 7.45 16 10 N -0.61 -31.72 2.79 -702.62 -1.96 -33.68 16 11 C 0.18 9.58 8.10 127.77 1.04 10.62 16 12 C -0.26 -14.81 9.49 84.04 0.80 -14.01 16 13 H 0.07 3.72 7.84 -2.91 -0.02 3.69 16 14 C -0.05 -2.87 5.14 84.87 0.44 -2.44 16 15 N -0.94 -57.23 10.95 21.65 0.24 -56.99 16 16 Si 0.97 46.00 29.56 68.60 2.03 48.02 16 17 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 18 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 19 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 20 C -0.13 -4.69 5.30 30.67 0.16 -4.53 16 21 C 0.12 3.72 6.43 86.36 0.56 4.27 16 22 N -0.23 -6.91 8.64 -50.00 -0.43 -7.34 16 23 N -0.09 -2.33 13.67 37.02 0.51 -1.83 16 24 N -0.34 -6.46 3.28 -313.40 -1.03 -7.49 16 25 C 0.13 1.18 3.68 44.99 0.17 1.34 16 26 C -0.16 -1.39 9.47 71.98 0.68 -0.71 16 27 C -0.16 -1.17 9.47 71.98 0.68 -0.49 16 28 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.10 1.70 6.33 -2.39 -0.02 1.69 16 30 H 0.11 0.55 7.19 -2.39 -0.02 0.53 16 31 H 0.14 4.72 3.64 -101.27 -0.37 4.35 16 32 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.05 2.30 8.14 -2.39 -0.02 2.29 16 34 H 0.04 1.64 7.72 -2.38 -0.02 1.62 16 35 H 0.06 2.59 7.89 -2.39 -0.02 2.57 16 36 H -0.01 -0.55 7.76 -2.39 -0.02 -0.57 16 37 H 0.02 1.34 7.06 -2.39 -0.02 1.32 16 38 H 0.02 0.85 6.48 -2.38 -0.02 0.84 16 39 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 40 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.05 1.85 6.75 -2.39 -0.02 1.83 16 42 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.09 2.77 7.02 -2.39 -0.02 2.75 16 44 H 0.15 0.31 6.79 -2.39 -0.02 0.29 16 45 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 47 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.11 0.15 8.14 -2.38 -0.02 0.13 16 49 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 50 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -74.45 389.83 4.66 -69.79 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.58 Total: 10.76 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: 7.24 Total: 18.74 kcal Atomic # 7 Polarization: -123.76 SS G_CDS: -5.13 Total: -128.89 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.06 Total: -18.43 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -74.45 4.66 -69.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985719065.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.270 kcal (2) G-P(sol) polarization free energy of solvation -74.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds