Wall clock time and date at job start Tue Mar 31 2020 20:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47020 * 2 1 4 4 C 1.36603 * 126.58188 * 270.02042 * 3 2 1 5 5 C 1.47525 * 125.76587 * 0.04161 * 4 3 2 6 6 O 1.21590 * 120.00099 * 359.71532 * 5 4 3 7 7 N 1.34776 * 119.99838 * 179.71213 * 5 4 3 8 8 C 1.46501 * 119.99924 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.49594 * 325.06229 * 8 7 5 10 10 C 1.53034 * 109.52557 * 85.14575 * 8 7 5 11 11 C 1.53040 * 109.53964 * 181.33098 * 10 8 7 12 12 C 1.53622 * 109.24165 * 298.51558 * 11 10 8 13 13 N 1.46918 * 108.54790 * 54.85143 * 12 11 10 14 14 C 1.36936 * 120.63020 * 126.36407 * 13 12 11 15 15 H 1.08002 * 120.00338 * 209.43467 * 14 13 12 16 16 C 1.38811 * 119.99986 * 29.44092 * 14 13 12 17 17 N 1.31621 * 120.00133 * 24.34347 * 16 14 13 18 18 Si 1.86801 * 120.00159 * 204.34298 * 16 14 13 19 19 H 1.48504 * 109.46707 * 89.99987 * 18 16 14 20 20 H 1.48498 * 109.47082 * 330.00336 * 18 16 14 21 21 H 1.48496 * 109.47095 * 209.99844 * 18 16 14 22 22 C 1.46924 * 118.73877 * 306.09929 * 13 12 11 23 23 H 1.09002 * 109.58337 * 293.92620 * 22 13 12 24 24 C 1.52999 * 109.58848 * 173.64548 * 22 13 12 25 25 N 1.34398 * 108.46174 * 179.77359 * 4 3 2 26 26 N 1.28756 * 109.52055 * 0.23484 * 25 4 3 27 27 N 1.34814 * 126.58349 * 90.19566 * 3 2 1 28 28 C 1.46495 * 126.59489 * 359.97438 * 27 3 2 29 29 C 1.52998 * 109.47726 * 270.30101 * 28 27 3 30 30 H 1.08997 * 109.46881 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47335 * 299.99967 * 1 2 3 32 32 H 1.08998 * 109.46968 * 60.00459 * 1 2 3 33 33 H 1.08996 * 109.47335 * 240.00033 * 2 1 3 34 34 H 1.09004 * 109.47364 * 119.99377 * 2 1 3 35 35 H 0.96998 * 119.99847 * 0.02562 * 7 5 4 36 36 H 1.08996 * 109.46160 * 301.35776 * 10 8 7 37 37 H 1.09007 * 109.46201 * 61.31469 * 10 8 7 38 38 H 1.08995 * 109.49842 * 58.58704 * 11 10 8 39 39 H 1.09004 * 109.49995 * 178.68413 * 11 10 8 40 40 H 1.09002 * 109.73892 * 295.11263 * 12 11 10 41 41 H 1.09002 * 109.66407 * 174.55465 * 12 11 10 42 42 H 0.97001 * 119.99789 * 4.04228 * 17 16 14 43 43 H 1.08996 * 109.47424 * 59.99469 * 24 22 13 44 44 H 1.08996 * 109.47355 * 180.02562 * 24 22 13 45 45 H 1.09001 * 109.46757 * 300.00034 * 24 22 13 46 46 H 1.09003 * 109.46736 * 30.30551 * 28 27 3 47 47 H 1.09001 * 109.47225 * 150.29977 * 28 27 3 48 48 H 1.08998 * 109.47365 * 179.97438 * 29 28 27 49 49 H 1.08993 * 109.47378 * 300.00115 * 29 28 27 50 50 H 1.09001 * 109.46870 * 59.99658 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3033 2.1885 -1.0969 5 6 2.1529 1.7672 -2.5027 6 8 1.7611 0.6459 -2.7628 7 7 2.4497 2.6252 -3.4988 8 6 2.2999 2.2070 -4.8948 9 1 2.5542 1.1511 -4.9876 10 6 0.8525 2.4250 -5.3414 11 6 0.6876 1.9574 -6.7893 12 6 1.6044 2.7905 -7.6979 13 7 2.9786 2.6974 -7.1868 14 6 4.0030 2.3063 -8.0070 15 1 4.8584 1.7916 -7.5949 16 6 3.9422 2.5716 -9.3682 17 7 3.2040 3.5666 -9.8125 18 14 4.9079 1.5163 -10.5695 19 1 4.0695 0.3715 -11.0075 20 1 6.1342 1.0062 -9.9053 21 1 5.2876 2.3322 -11.7507 22 6 3.2339 3.0376 -5.7805 23 1 3.0439 4.0991 -5.6210 24 6 4.6892 2.7191 -5.4317 25 7 2.7244 3.3944 -0.6789 26 7 2.7371 3.4233 0.6082 27 7 2.3036 2.1771 1.0825 28 6 2.1663 1.7760 2.4848 29 6 0.7563 2.1107 2.9755 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 2.7626 3.5196 -3.2913 36 1 0.1838 1.8543 -4.6971 37 1 0.6066 3.4847 -5.2719 38 1 0.9571 0.9039 -6.8643 39 1 -0.3488 2.0912 -7.0992 40 1 1.2817 3.8317 -7.6911 41 1 1.5654 2.4005 -8.7150 42 1 2.7494 4.1508 -9.1855 43 1 5.3521 3.3016 -6.0714 44 1 4.8763 2.9717 -4.3880 45 1 4.8757 1.6564 -5.5870 46 1 2.3370 0.7031 2.5741 47 1 2.8981 2.3118 3.0893 48 1 0.6541 1.8118 4.0187 49 1 0.5857 3.1835 2.8861 50 1 0.0245 1.5749 2.3709 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993808702.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:39 Heat of formation + Delta-G solvation = 63.526767 kcal Electronic energy + Delta-G solvation = -30171.023520 eV Core-core repulsion = 26235.450359 eV Total energy + Delta-G solvation = -3935.573161 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.47083 -39.53957 -37.68119 -36.13942 -34.54506 -33.96117 -32.63707 -31.75274 -30.91535 -30.14671 -28.80919 -26.28114 -25.11098 -24.78761 -24.36234 -23.46866 -21.84174 -20.87573 -20.48652 -20.23300 -19.38800 -17.98651 -16.91780 -16.65232 -16.06840 -15.76339 -15.19657 -14.98135 -14.66287 -14.54608 -14.26621 -14.15868 -13.68372 -13.61120 -13.48025 -13.31252 -13.06649 -13.04427 -12.77900 -12.64125 -12.49654 -12.17326 -11.83858 -11.66799 -11.41573 -11.29608 -11.19963 -11.15514 -11.00989 -10.70303 -10.46993 -10.34053 -10.27760 -10.11608 -10.02881 -9.93611 -9.74119 -9.30658 -9.13352 -8.66272 -8.30612 -6.84044 -6.02759 -3.20535 0.94703 1.66790 1.77068 3.33038 3.39241 3.54073 3.55541 3.71861 3.93145 3.98193 4.30045 4.32592 4.49754 4.58494 4.63741 4.76096 4.90809 4.93620 5.09212 5.11533 5.23394 5.34454 5.36856 5.43863 5.49193 5.54062 5.58393 5.67270 5.72360 5.85408 5.89291 5.93083 6.04523 6.17892 6.19734 6.31960 6.42319 6.45188 6.53746 6.63582 6.67851 6.76249 6.96787 7.04043 7.15271 7.25189 7.64882 7.90992 8.08504 8.39087 8.62489 9.14622 9.88936 10.32545 11.26254 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024100 B = 0.002617 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.569081 B =10698.603192 C =10981.505188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.065 4.065 3 C 0.125 3.875 4 C -0.100 4.100 5 C 0.602 3.398 6 O -0.539 6.539 7 N -0.702 5.702 8 C 0.133 3.867 9 H 0.089 0.911 10 C -0.117 4.117 11 C -0.134 4.134 12 C 0.149 3.851 13 N -0.589 5.589 14 C -0.347 4.347 15 H 0.062 0.938 16 C -0.024 4.024 17 N -0.917 5.917 18 Si 1.068 2.932 19 H -0.293 1.293 20 H -0.292 1.292 21 H -0.291 1.291 22 C 0.169 3.831 23 H 0.027 0.973 24 C -0.134 4.134 25 N -0.203 5.203 26 N -0.071 5.071 27 N -0.362 5.362 28 C 0.116 3.884 29 C -0.174 4.174 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.118 0.882 34 H 0.076 0.924 35 H 0.404 0.596 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.018 0.982 41 H 0.079 0.921 42 H 0.269 0.731 43 H 0.063 0.937 44 H 0.039 0.961 45 H 0.054 0.946 46 H 0.101 0.899 47 H 0.106 0.894 48 H 0.084 0.916 49 H 0.069 0.931 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.536 -5.519 25.791 26.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.104 4.104 3 C -0.013 4.013 4 C -0.239 4.239 5 C 0.386 3.614 6 O -0.416 6.416 7 N -0.351 5.351 8 C 0.027 3.973 9 H 0.107 0.893 10 C -0.156 4.156 11 C -0.173 4.173 12 C 0.023 3.977 13 N -0.314 5.314 14 C -0.476 4.476 15 H 0.080 0.920 16 C -0.226 4.226 17 N -0.557 5.557 18 Si 0.899 3.101 19 H -0.221 1.221 20 H -0.219 1.219 21 H -0.217 1.217 22 C 0.061 3.939 23 H 0.044 0.956 24 C -0.191 4.191 25 N -0.076 5.076 26 N -0.050 5.050 27 N -0.148 5.148 28 C -0.005 4.005 29 C -0.232 4.232 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.136 0.864 34 H 0.095 0.905 35 H 0.238 0.762 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.036 0.964 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.058 0.942 45 H 0.073 0.927 46 H 0.119 0.881 47 H 0.124 0.876 48 H 0.103 0.897 49 H 0.088 0.912 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.942 -5.161 24.374 25.400 hybrid contribution -0.496 -0.102 1.826 1.894 sum -5.438 -5.263 26.200 27.271 Atomic orbital electron populations 1.21723 0.93097 1.02886 1.02361 1.20483 0.97308 0.87275 1.05335 1.21948 0.96701 0.96276 0.86363 1.21360 1.14752 0.92128 0.95702 1.16710 0.77632 0.84766 0.82327 1.90751 1.47585 1.19756 1.83483 1.45927 1.66122 1.16746 1.06296 1.21795 0.96231 1.01157 0.78078 0.89312 1.21766 0.96065 1.00600 0.97161 1.22127 0.99297 1.01146 0.94776 1.21096 0.83557 0.95669 0.97358 1.44130 1.03401 1.78787 1.05055 1.19979 1.01703 1.34763 0.91184 0.92034 1.25858 1.01507 0.98363 0.96856 1.70751 1.33147 1.13442 1.38409 0.83456 0.75388 0.75538 0.75762 1.22058 1.21890 1.21691 1.20551 0.92763 0.94617 0.85944 0.95585 1.21786 0.96583 1.02065 0.98697 1.74610 1.10731 1.18132 1.04105 1.81966 1.20554 0.98968 1.03469 1.50476 1.45619 1.11238 1.07427 1.21970 1.00174 1.02026 0.76290 1.22263 0.94896 1.03606 1.02417 0.91075 0.93066 0.91434 0.86358 0.90507 0.76161 0.92854 0.92714 0.92093 0.92845 0.96404 0.90224 0.91955 0.91786 0.94211 0.92682 0.88085 0.87562 0.89727 0.91203 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.89 37.16 0.37 -0.76 16 2 C -0.06 -0.56 5.63 -27.88 -0.16 -0.72 16 3 C 0.12 1.41 6.27 -81.87 -0.51 0.89 16 4 C -0.10 -1.42 6.99 -83.55 -0.58 -2.01 16 5 C 0.60 9.69 7.78 -12.47 -0.10 9.59 16 6 O -0.54 -9.51 14.38 5.29 0.08 -9.43 16 7 N -0.70 -11.39 4.58 -54.73 -0.25 -11.64 16 8 C 0.13 2.47 1.99 -67.81 -0.14 2.34 16 9 H 0.09 1.86 7.58 -51.93 -0.39 1.46 16 10 C -0.12 -2.12 5.46 -26.69 -0.15 -2.27 16 11 C -0.13 -2.60 6.10 -26.39 -0.16 -2.77 16 12 C 0.15 3.47 4.71 -3.49 -0.02 3.46 16 13 N -0.59 -14.47 2.83 -164.52 -0.46 -14.94 16 14 C -0.35 -9.44 8.48 -15.06 -0.13 -9.56 16 15 H 0.06 1.68 6.30 -52.49 -0.33 1.35 16 16 C -0.02 -0.66 4.69 -17.43 -0.08 -0.74 16 17 N -0.92 -27.27 12.51 55.49 0.69 -26.58 16 18 Si 1.07 25.35 29.98 -169.99 -5.10 20.26 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 C 0.17 3.51 3.03 -67.60 -0.20 3.31 16 23 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 24 C -0.13 -2.65 7.83 37.16 0.29 -2.36 16 25 N -0.20 -2.98 12.04 32.85 0.40 -2.59 16 26 N -0.07 -0.93 13.78 60.35 0.83 -0.10 16 27 N -0.36 -3.60 3.63 -56.85 -0.21 -3.81 16 28 C 0.12 0.60 7.02 -4.05 -0.03 0.57 16 29 C -0.17 -0.73 10.24 37.16 0.38 -0.35 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.33 6.12 -51.93 -0.32 0.01 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.12 1.28 6.42 -51.93 -0.33 0.95 16 34 H 0.08 0.43 7.18 -51.93 -0.37 0.06 16 35 H 0.40 6.14 8.29 -40.82 -0.34 5.80 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.97 8.14 -51.92 -0.42 0.54 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.02 0.42 7.84 -51.93 -0.41 0.02 16 41 H 0.08 2.07 6.41 -51.93 -0.33 1.74 16 42 H 0.27 8.06 6.63 -40.82 -0.27 7.79 16 43 H 0.06 1.36 7.62 -51.93 -0.40 0.96 16 44 H 0.04 0.68 7.80 -51.93 -0.41 0.27 16 45 H 0.05 1.13 7.44 -51.93 -0.39 0.75 16 46 H 0.10 0.29 7.16 -51.93 -0.37 -0.08 16 47 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 49 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.07 0.32 6.12 -51.93 -0.32 0.00 16 LS Contribution 391.51 15.07 5.90 5.90 Total: -1.00 -32.57 391.51 -7.33 -39.90 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -8.00 Total: 4.40 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -1.21 Total: -1.38 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: 1.00 Total: -59.65 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.08 Total: -9.43 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.10 Total: 20.26 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.57 -7.33 -39.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993808702.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.432 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds