Wall clock time and date at job start Tue Mar 31 2020 20:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47020 * 2 1 4 4 C 1.36603 * 126.58188 * 270.02042 * 3 2 1 5 5 C 1.47525 * 125.76587 * 0.04161 * 4 3 2 6 6 O 1.21590 * 120.00099 * 359.71532 * 5 4 3 7 7 N 1.34776 * 119.99838 * 179.71213 * 5 4 3 8 8 C 1.46501 * 119.99924 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.49594 * 325.06229 * 8 7 5 10 10 C 1.53034 * 109.52557 * 85.14575 * 8 7 5 11 11 C 1.53040 * 109.53964 * 181.33098 * 10 8 7 12 12 C 1.53622 * 109.24165 * 298.51558 * 11 10 8 13 13 N 1.46918 * 108.54790 * 54.85143 * 12 11 10 14 14 C 1.36936 * 120.63020 * 126.36407 * 13 12 11 15 15 H 1.08002 * 120.00338 * 209.43467 * 14 13 12 16 16 C 1.38811 * 119.99986 * 29.44092 * 14 13 12 17 17 N 1.31621 * 120.00133 * 24.34347 * 16 14 13 18 18 Si 1.86801 * 120.00159 * 204.34298 * 16 14 13 19 19 H 1.48504 * 109.46707 * 89.99987 * 18 16 14 20 20 H 1.48498 * 109.47082 * 330.00336 * 18 16 14 21 21 H 1.48496 * 109.47095 * 209.99844 * 18 16 14 22 22 C 1.46924 * 118.73877 * 306.09929 * 13 12 11 23 23 H 1.09002 * 109.58337 * 293.92620 * 22 13 12 24 24 C 1.52999 * 109.58848 * 173.64548 * 22 13 12 25 25 N 1.34398 * 108.46174 * 179.77359 * 4 3 2 26 26 N 1.28756 * 109.52055 * 0.23484 * 25 4 3 27 27 N 1.34814 * 126.58349 * 90.19566 * 3 2 1 28 28 C 1.46495 * 126.59489 * 359.97438 * 27 3 2 29 29 C 1.52998 * 109.47726 * 270.30101 * 28 27 3 30 30 H 1.08997 * 109.46881 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47335 * 299.99967 * 1 2 3 32 32 H 1.08998 * 109.46968 * 60.00459 * 1 2 3 33 33 H 1.08996 * 109.47335 * 240.00033 * 2 1 3 34 34 H 1.09004 * 109.47364 * 119.99377 * 2 1 3 35 35 H 0.96998 * 119.99847 * 0.02562 * 7 5 4 36 36 H 1.08996 * 109.46160 * 301.35776 * 10 8 7 37 37 H 1.09007 * 109.46201 * 61.31469 * 10 8 7 38 38 H 1.08995 * 109.49842 * 58.58704 * 11 10 8 39 39 H 1.09004 * 109.49995 * 178.68413 * 11 10 8 40 40 H 1.09002 * 109.73892 * 295.11263 * 12 11 10 41 41 H 1.09002 * 109.66407 * 174.55465 * 12 11 10 42 42 H 0.97001 * 119.99789 * 4.04228 * 17 16 14 43 43 H 1.08996 * 109.47424 * 59.99469 * 24 22 13 44 44 H 1.08996 * 109.47355 * 180.02562 * 24 22 13 45 45 H 1.09001 * 109.46757 * 300.00034 * 24 22 13 46 46 H 1.09003 * 109.46736 * 30.30551 * 28 27 3 47 47 H 1.09001 * 109.47225 * 150.29977 * 28 27 3 48 48 H 1.08998 * 109.47365 * 179.97438 * 29 28 27 49 49 H 1.08993 * 109.47378 * 300.00115 * 29 28 27 50 50 H 1.09001 * 109.46870 * 59.99658 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3033 2.1885 -1.0969 5 6 2.1529 1.7672 -2.5027 6 8 1.7611 0.6459 -2.7628 7 7 2.4497 2.6252 -3.4988 8 6 2.2999 2.2070 -4.8948 9 1 2.5542 1.1511 -4.9876 10 6 0.8525 2.4250 -5.3414 11 6 0.6876 1.9574 -6.7893 12 6 1.6044 2.7905 -7.6979 13 7 2.9786 2.6974 -7.1868 14 6 4.0030 2.3063 -8.0070 15 1 4.8584 1.7916 -7.5949 16 6 3.9422 2.5716 -9.3682 17 7 3.2040 3.5666 -9.8125 18 14 4.9079 1.5163 -10.5695 19 1 4.0695 0.3715 -11.0075 20 1 6.1342 1.0062 -9.9053 21 1 5.2876 2.3322 -11.7507 22 6 3.2339 3.0376 -5.7805 23 1 3.0439 4.0991 -5.6210 24 6 4.6892 2.7191 -5.4317 25 7 2.7244 3.3944 -0.6789 26 7 2.7371 3.4233 0.6082 27 7 2.3036 2.1771 1.0825 28 6 2.1663 1.7760 2.4848 29 6 0.7563 2.1107 2.9755 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 2.7626 3.5196 -3.2913 36 1 0.1838 1.8543 -4.6971 37 1 0.6066 3.4847 -5.2719 38 1 0.9571 0.9039 -6.8643 39 1 -0.3488 2.0912 -7.0992 40 1 1.2817 3.8317 -7.6911 41 1 1.5654 2.4005 -8.7150 42 1 2.7494 4.1508 -9.1855 43 1 5.3521 3.3016 -6.0714 44 1 4.8763 2.9717 -4.3880 45 1 4.8757 1.6564 -5.5870 46 1 2.3370 0.7031 2.5741 47 1 2.8981 2.3118 3.0893 48 1 0.6541 1.8118 4.0187 49 1 0.5857 3.1835 2.8861 50 1 0.0245 1.5749 2.3709 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993808702.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:38 Heat of formation + Delta-G solvation = 42.066410 kcal Electronic energy + Delta-G solvation = -30171.954111 eV Core-core repulsion = 26235.450359 eV Total energy + Delta-G solvation = -3936.503752 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.39351 -40.94937 -39.28435 -36.87553 -36.09818 -34.74028 -34.32748 -33.49052 -31.64905 -31.30254 -30.30355 -27.94759 -26.83648 -25.68288 -25.18462 -24.51376 -23.36169 -22.55328 -21.50004 -21.30968 -20.99583 -19.20651 -18.74821 -17.56577 -17.26273 -16.90096 -16.41352 -16.00781 -15.90535 -15.79083 -15.64648 -15.45426 -15.16046 -14.94252 -14.81543 -14.74573 -14.24392 -13.95213 -13.79764 -13.49573 -13.43617 -13.15502 -13.04843 -12.97725 -12.78062 -12.75618 -12.56911 -12.34913 -12.07661 -12.00296 -11.91555 -11.90209 -11.88624 -11.79648 -11.70873 -11.25237 -11.16045 -10.98386 -10.46531 -10.32405 -9.98233 -8.89079 -8.19830 -5.36234 0.07804 0.57477 1.05376 1.60185 1.67371 1.84236 2.05491 2.20116 2.68492 3.10021 3.25829 3.33795 3.49266 3.51569 3.68632 3.82154 3.94232 3.94656 4.08256 4.11237 4.22359 4.23750 4.27714 4.37037 4.40896 4.48935 4.51477 4.61960 4.67612 4.72790 4.75108 4.82092 4.85881 4.94153 4.96045 5.03076 5.07074 5.11096 5.17834 5.19932 5.25973 5.33253 5.34659 5.38616 5.50366 5.55900 5.94950 6.41196 6.45443 6.87062 7.07247 7.14105 7.81730 8.25566 9.06377 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024100 B = 0.002617 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.569081 B =10698.603192 C =10981.505188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 C 0.137 3.863 4 C -0.128 4.128 5 C 0.604 3.396 6 O -0.557 6.557 7 N -0.700 5.700 8 C 0.151 3.849 9 H 0.067 0.933 10 C -0.109 4.109 11 C -0.122 4.122 12 C 0.154 3.846 13 N -0.607 5.607 14 C -0.344 4.344 15 H 0.058 0.942 16 C -0.076 4.076 17 N -0.946 5.946 18 Si 1.114 2.886 19 H -0.285 1.285 20 H -0.274 1.274 21 H -0.295 1.295 22 C 0.165 3.835 23 H 0.027 0.973 24 C -0.123 4.123 25 N -0.225 5.225 26 N -0.089 5.089 27 N -0.346 5.346 28 C 0.102 3.898 29 C -0.169 4.169 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.036 0.964 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.409 0.591 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.078 0.922 40 H 0.009 0.991 41 H 0.047 0.953 42 H 0.255 0.745 43 H 0.045 0.955 44 H 0.067 0.933 45 H 0.043 0.957 46 H 0.134 0.866 47 H 0.119 0.881 48 H 0.114 0.886 49 H 0.050 0.950 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.897 -7.082 29.000 30.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.102 4.102 3 C -0.002 4.002 4 C -0.268 4.268 5 C 0.389 3.611 6 O -0.435 6.435 7 N -0.349 5.349 8 C 0.045 3.955 9 H 0.086 0.914 10 C -0.148 4.148 11 C -0.162 4.162 12 C 0.028 3.972 13 N -0.332 5.332 14 C -0.474 4.474 15 H 0.076 0.924 16 C -0.272 4.272 17 N -0.588 5.588 18 Si 0.940 3.060 19 H -0.212 1.212 20 H -0.199 1.199 21 H -0.222 1.222 22 C 0.059 3.941 23 H 0.044 0.956 24 C -0.181 4.181 25 N -0.098 5.098 26 N -0.068 5.068 27 N -0.132 5.132 28 C -0.017 4.017 29 C -0.227 4.227 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.115 0.885 34 H 0.135 0.865 35 H 0.245 0.755 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.027 0.973 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.086 0.914 45 H 0.062 0.938 46 H 0.152 0.848 47 H 0.137 0.863 48 H 0.132 0.868 49 H 0.069 0.931 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.304 -6.715 27.660 28.953 hybrid contribution -0.403 0.372 1.024 1.162 sum -5.707 -6.343 28.684 29.926 Atomic orbital electron populations 1.21707 0.92368 1.03856 1.01752 1.20591 0.97759 0.85597 1.06250 1.22285 0.95112 0.96990 0.85859 1.21215 1.17176 0.93072 0.95322 1.16922 0.76839 0.84281 0.83029 1.90738 1.48346 1.20440 1.83990 1.45767 1.66647 1.17170 1.05336 1.21319 0.95901 0.99205 0.79099 0.91446 1.21695 0.95832 1.01122 0.96165 1.21979 0.99636 0.99675 0.94860 1.20969 0.84011 0.95605 0.96592 1.44351 1.03444 1.79108 1.06268 1.20177 1.01989 1.33527 0.91677 0.92401 1.27106 1.02321 0.98872 0.98910 1.70867 1.35126 1.14784 1.37994 0.82836 0.75058 0.74235 0.73882 1.21217 1.19935 1.22220 1.20678 0.94035 0.94924 0.84481 0.95589 1.21671 0.95499 1.00899 0.99999 1.74576 1.11605 1.18689 1.04945 1.81864 1.21235 1.00740 1.02954 1.50817 1.43649 1.09846 1.08867 1.22562 1.01245 1.04212 0.73656 1.22260 0.93969 1.02373 1.04126 0.89335 0.91243 0.94467 0.88504 0.86483 0.75483 0.91796 0.91994 0.92968 0.90365 0.97264 0.93437 0.93481 0.93577 0.91432 0.93782 0.84825 0.86266 0.86785 0.93076 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.89 71.98 0.71 -1.14 16 2 C -0.06 -0.93 5.63 29.85 0.17 -0.76 16 3 C 0.14 2.83 6.27 41.72 0.26 3.09 16 4 C -0.13 -3.55 6.99 40.82 0.29 -3.26 16 5 C 0.60 19.23 7.78 86.69 0.67 19.90 16 6 O -0.56 -19.51 14.38 -4.00 -0.06 -19.57 16 7 N -0.70 -22.49 4.58 -445.34 -2.04 -24.53 16 8 C 0.15 5.60 1.99 45.07 0.09 5.69 16 9 H 0.07 2.83 7.58 -2.38 -0.02 2.82 16 10 C -0.11 -3.89 5.46 30.62 0.17 -3.72 16 11 C -0.12 -4.72 6.10 30.82 0.19 -4.53 16 12 C 0.15 7.35 4.71 86.51 0.41 7.76 16 13 N -0.61 -30.46 2.83 -674.41 -1.91 -32.37 16 14 C -0.34 -19.07 8.48 84.03 0.71 -18.35 16 15 H 0.06 3.21 6.30 -2.91 -0.02 3.19 16 16 C -0.08 -4.32 4.69 84.86 0.40 -3.92 16 17 N -0.95 -57.88 12.51 21.65 0.27 -57.61 16 18 Si 1.11 51.81 29.98 68.60 2.06 53.87 16 19 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 21 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 22 C 0.17 6.95 3.03 44.97 0.14 7.09 16 23 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 24 C -0.12 -4.90 7.83 71.98 0.56 -4.34 16 25 N -0.23 -6.51 12.04 -49.99 -0.60 -7.12 16 26 N -0.09 -2.24 13.78 37.02 0.51 -1.73 16 27 N -0.35 -6.06 3.63 -333.78 -1.21 -7.28 16 28 C 0.10 0.66 7.02 86.38 0.61 1.27 16 29 C -0.17 -0.84 10.24 71.98 0.74 -0.10 16 30 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 0.67 6.12 -2.39 -0.01 0.65 16 32 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.10 1.95 6.42 -2.39 -0.02 1.93 16 34 H 0.12 0.78 7.18 -2.39 -0.02 0.76 16 35 H 0.41 12.32 8.29 -92.71 -0.77 11.55 16 36 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 38 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 40 H 0.01 0.46 7.84 -2.39 -0.02 0.44 16 41 H 0.05 2.56 6.41 -2.39 -0.02 2.55 16 42 H 0.26 15.88 6.63 -92.71 -0.62 15.27 16 43 H 0.05 1.97 7.62 -2.39 -0.02 1.95 16 44 H 0.07 2.27 7.80 -2.39 -0.02 2.25 16 45 H 0.04 1.82 7.44 -2.39 -0.02 1.81 16 46 H 0.13 0.06 7.16 -2.39 -0.02 0.04 16 47 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 49 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 50 H 0.06 0.38 6.12 -2.39 -0.01 0.37 16 Total: -1.00 -73.42 391.51 3.47 -69.95 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.34 Total: 21.70 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 6.11 Total: 4.67 kcal Atomic # 7 Polarization: -125.65 SS G_CDS: -4.98 Total: -130.62 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.06 Total: -19.57 kcal Atomic # 14 Polarization: 51.81 SS G_CDS: 2.06 Total: 53.87 kcal Total: -73.42 3.47 -69.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993808702.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.015 kcal (2) G-P(sol) polarization free energy of solvation -73.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds