Wall clock time and date at job start Tue Mar 31 2020 18:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36598 * 126.57994 * 2 1 4 4 C 1.47524 * 125.76831 * 359.97438 * 3 2 1 5 5 O 1.21595 * 120.00237 * 359.97438 * 4 3 2 6 6 N 1.34778 * 120.00068 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00188 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.50152 * 325.06641 * 7 6 4 9 9 C 1.53044 * 109.49365 * 85.16402 * 7 6 4 10 10 C 1.53043 * 109.53900 * 58.58631 * 9 7 6 11 11 C 1.52762 * 109.38024 * 61.24120 * 10 9 7 12 12 N 1.46923 * 109.00850 * 305.58475 * 11 10 9 13 13 C 1.36936 * 120.63133 * 233.58986 * 12 11 10 14 14 H 1.08000 * 120.00125 * 150.98649 * 13 12 11 15 15 C 1.38809 * 119.99980 * 330.98439 * 13 12 11 16 16 N 1.31620 * 120.00082 * 343.83673 * 15 13 12 17 17 Si 1.86806 * 120.00148 * 163.83176 * 15 13 12 18 18 H 1.48503 * 109.47109 * 84.98274 * 17 15 13 19 19 H 1.48502 * 109.47089 * 324.98354 * 17 15 13 20 20 H 1.48500 * 109.47129 * 204.98023 * 17 15 13 21 21 C 1.46929 * 118.73880 * 53.31466 * 12 11 10 22 22 H 1.08994 * 109.58611 * 66.57500 * 21 12 11 23 23 C 1.53004 * 109.58738 * 186.85450 * 21 12 11 24 24 N 1.34394 * 108.45759 * 180.25663 * 3 2 1 25 25 N 1.28758 * 109.52578 * 359.58391 * 24 3 2 26 26 N 1.34810 * 126.58239 * 180.02562 * 2 1 3 27 27 C 1.46501 * 126.59336 * 359.95745 * 26 2 1 28 28 C 1.53001 * 109.47334 * 119.99432 * 27 26 2 29 29 C 1.53003 * 109.46806 * 239.99520 * 27 26 2 30 30 H 1.09003 * 109.46440 * 89.98423 * 1 2 3 31 31 H 1.08996 * 109.47269 * 209.97585 * 1 2 3 32 32 H 1.09000 * 109.47455 * 329.98532 * 1 2 3 33 33 H 0.96999 * 119.99518 * 359.97438 * 6 4 3 34 34 H 1.09003 * 109.45591 * 178.60910 * 9 7 6 35 35 H 1.08992 * 109.46157 * 298.56274 * 9 7 6 36 36 H 1.08995 * 109.49542 * 181.31386 * 10 9 7 37 37 H 1.08995 * 109.49583 * 301.41030 * 10 9 7 38 38 H 1.09006 * 109.50749 * 185.70770 * 11 10 9 39 39 H 1.08994 * 109.43486 * 65.42636 * 11 10 9 40 40 H 0.96999 * 120.00114 * 180.02562 * 16 15 13 41 41 H 1.09002 * 109.46963 * 60.00121 * 23 21 12 42 42 H 1.08998 * 109.47113 * 179.97438 * 23 21 12 43 43 H 1.09000 * 109.46839 * 300.00358 * 23 21 12 44 44 H 1.09002 * 109.47127 * 359.97438 * 27 26 2 45 45 H 1.09000 * 109.46949 * 299.99758 * 28 27 26 46 46 H 1.09002 * 109.47196 * 59.99818 * 28 27 26 47 47 H 1.08999 * 109.46963 * 179.97438 * 28 27 26 48 48 H 1.08996 * 109.47276 * 59.99840 * 29 27 26 49 49 H 1.08999 * 109.47123 * 179.97438 * 29 27 26 50 50 H 1.09002 * 109.47022 * 299.99752 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8737 2.5027 -0.0005 5 8 0.6859 2.7628 -0.0015 6 7 2.7816 3.4988 -0.0010 7 6 2.3374 4.8948 -0.0021 8 1 1.4246 4.9857 -0.5907 9 6 2.0663 5.3456 1.4351 10 6 3.3390 5.1868 2.2701 11 6 4.4416 6.0684 1.6863 12 7 4.6091 5.7454 0.2628 13 6 5.8402 5.4143 -0.2372 14 1 5.9175 4.7546 -1.0889 15 6 6.9887 5.9265 0.3504 16 7 6.9079 6.9584 1.1634 17 14 8.6491 5.1511 -0.0125 18 1 9.2024 5.7291 -1.2635 19 1 8.4854 3.6841 -0.1750 20 1 9.5793 5.4239 1.1125 21 6 3.4297 5.7785 -0.6127 22 1 3.0678 6.8029 -0.6996 23 6 3.8041 5.2476 -1.9980 24 7 3.5983 0.6789 -0.0057 25 7 3.6299 -0.6083 -0.0004 26 7 2.3104 -1.0825 -0.0005 27 6 1.8864 -2.4848 -0.0002 28 6 2.4283 -3.1818 -1.2499 29 6 2.4301 -3.1817 1.2487 30 1 -0.3632 0.0003 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3634 0.8898 0.5140 33 1 3.7291 3.2913 -0.0006 34 1 1.7596 6.3916 1.4358 35 1 1.2722 4.7344 1.8637 36 1 3.1388 5.4860 3.2989 37 1 3.6600 4.1454 2.2495 38 1 5.3758 5.8814 2.2158 39 1 4.1623 7.1166 1.7928 40 1 7.7105 7.3166 1.5738 41 1 4.1610 4.2215 -1.9095 42 1 2.9278 5.2726 -2.6457 43 1 4.5902 5.8702 -2.4253 44 1 0.7976 -2.5352 0.0009 45 1 2.0410 -2.6853 -2.1396 46 1 3.5172 -3.1314 -1.2507 47 1 2.1132 -4.2252 -1.2494 48 1 2.0440 -2.6852 2.1389 49 1 2.1142 -4.2250 1.2491 50 1 3.5189 -3.1314 1.2479 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994141045.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:39 Heat of formation + Delta-G solvation = 50.393698 kcal Electronic energy + Delta-G solvation = -30670.640605 eV Core-core repulsion = 26734.497951 eV Total energy + Delta-G solvation = -3936.142654 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.30506 -40.93530 -39.04311 -37.35148 -35.62122 -34.10208 -33.90273 -33.39026 -32.05492 -30.94804 -28.79897 -28.28317 -27.81052 -26.82501 -25.03710 -24.54873 -23.34166 -22.35557 -21.47840 -21.10881 -20.16613 -18.75515 -18.25225 -17.41146 -17.23000 -17.11321 -16.50103 -16.01074 -15.72259 -15.62647 -15.30774 -15.15446 -14.96002 -14.69738 -14.50235 -14.25578 -14.13367 -13.97817 -13.94098 -13.54362 -13.23086 -13.20219 -12.97408 -12.90711 -12.86695 -12.71784 -12.53015 -12.43676 -12.36020 -12.33732 -12.16586 -11.93632 -11.89631 -11.65520 -11.35530 -11.13326 -11.02675 -10.96732 -10.47940 -10.22170 -9.81020 -8.59138 -7.81078 -5.25282 0.15829 0.67632 1.09862 1.46540 1.49739 1.58103 2.28537 2.32467 2.54426 3.22631 3.34146 3.35516 3.59936 3.61454 3.76925 3.81168 3.97822 4.03852 4.09688 4.14634 4.24077 4.41945 4.54616 4.58427 4.62005 4.64393 4.66384 4.68567 4.73992 4.74922 4.80029 4.87439 4.95800 5.02560 5.05529 5.12246 5.17611 5.17882 5.23005 5.24337 5.36613 5.47392 5.58205 5.60343 5.67331 5.75769 5.81733 6.45865 6.59641 6.97658 7.21147 7.25520 7.92044 8.43611 9.25483 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012845 B = 0.003667 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.342993 B = 7634.032804 C = 8887.071019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.130 3.870 3 C -0.132 4.132 4 C 0.601 3.399 5 O -0.562 6.562 6 N -0.688 5.688 7 C 0.142 3.858 8 H 0.091 0.909 9 C -0.113 4.113 10 C -0.128 4.128 11 C 0.179 3.821 12 N -0.597 5.597 13 C -0.245 4.245 14 H 0.072 0.928 15 C -0.046 4.046 16 N -0.933 5.933 17 Si 0.953 3.047 18 H -0.284 1.284 19 H -0.277 1.277 20 H -0.297 1.297 21 C 0.157 3.843 22 H 0.040 0.960 23 C -0.128 4.128 24 N -0.233 5.233 25 N -0.091 5.091 26 N -0.346 5.346 27 C 0.131 3.869 28 C -0.159 4.159 29 C -0.160 4.160 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.408 0.592 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.042 0.958 38 H 0.051 0.949 39 H 0.000 1.000 40 H 0.246 0.754 41 H 0.046 0.954 42 H 0.068 0.932 43 H 0.047 0.953 44 H 0.146 0.854 45 H 0.059 0.941 46 H 0.052 0.948 47 H 0.114 0.886 48 H 0.057 0.943 49 H 0.115 0.885 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.859 -20.876 -2.270 26.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.009 4.009 3 C -0.273 4.273 4 C 0.386 3.614 5 O -0.442 6.442 6 N -0.337 5.337 7 C 0.036 3.964 8 H 0.109 0.891 9 C -0.152 4.152 10 C -0.167 4.167 11 C 0.054 3.946 12 N -0.321 5.321 13 C -0.375 4.375 14 H 0.090 0.910 15 C -0.242 4.242 16 N -0.580 5.580 17 Si 0.782 3.218 18 H -0.211 1.211 19 H -0.202 1.202 20 H -0.223 1.223 21 C 0.050 3.950 22 H 0.057 0.943 23 C -0.186 4.186 24 N -0.105 5.105 25 N -0.070 5.070 26 N -0.133 5.133 27 C 0.032 3.968 28 C -0.217 4.217 29 C -0.218 4.218 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.114 0.886 33 H 0.244 0.756 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.018 0.982 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.163 0.837 45 H 0.078 0.922 46 H 0.072 0.928 47 H 0.133 0.867 48 H 0.077 0.923 49 H 0.133 0.867 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.043 -21.039 -2.214 26.551 hybrid contribution 1.175 0.362 0.126 1.236 sum -14.868 -20.677 -2.088 25.553 Atomic orbital electron populations 1.20830 0.82050 1.06214 1.05748 1.22383 0.97516 0.85615 0.95380 1.21406 0.89441 0.95915 1.20490 1.16890 0.85432 0.82961 0.76082 1.90681 1.16045 1.84044 1.53410 1.45838 1.10323 1.05619 1.71912 1.21453 0.97755 0.80192 0.97008 0.89085 1.21721 0.96988 1.01386 0.95054 1.21882 0.96339 0.99796 0.98649 1.20480 0.96114 0.93619 0.84408 1.44299 1.03500 1.80564 1.03735 1.19395 0.83428 1.20767 1.13924 0.91026 1.25652 1.00655 0.96794 1.01070 1.70165 1.27884 1.24178 1.35737 0.85514 0.80959 0.78567 0.76763 1.21112 1.20195 1.22336 1.20874 0.87479 0.95804 0.90815 0.94252 1.21705 1.00869 1.00556 0.95442 1.74688 1.20257 1.04959 1.10600 1.81841 0.98319 1.02860 1.23987 1.51008 1.05141 1.08568 1.48610 1.22210 1.02521 0.73088 0.98938 1.22161 1.01875 1.02550 0.95080 1.22173 1.01888 1.02593 0.95137 0.87578 0.87183 0.88555 0.75638 0.90766 0.92082 0.91786 0.93946 0.93041 0.98203 0.94452 0.93475 0.91327 0.93378 0.83697 0.92236 0.92846 0.86706 0.92349 0.86678 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.34 9.41 71.24 0.67 -0.66 16 2 C 0.13 3.08 7.02 41.72 0.29 3.37 16 3 C -0.13 -4.26 6.99 40.82 0.29 -3.97 16 4 C 0.60 20.78 7.78 86.69 0.67 21.46 16 5 O -0.56 -19.58 14.38 -4.01 -0.06 -19.63 16 6 N -0.69 -25.19 3.45 -445.34 -1.54 -26.72 16 7 C 0.14 5.07 2.33 45.07 0.10 5.17 16 8 H 0.09 3.06 7.58 -2.39 -0.02 3.04 16 9 C -0.11 -3.94 5.58 30.62 0.17 -3.77 16 10 C -0.13 -5.04 5.91 30.53 0.18 -4.86 16 11 C 0.18 8.69 5.26 86.22 0.45 9.14 16 12 N -0.60 -29.05 2.65 -676.06 -1.79 -30.84 16 13 C -0.24 -13.13 8.60 84.03 0.72 -12.41 16 14 H 0.07 3.77 6.21 -2.91 -0.02 3.75 16 15 C -0.05 -2.60 4.93 84.86 0.42 -2.18 16 16 N -0.93 -55.38 11.21 21.65 0.24 -55.13 16 17 Si 0.95 46.07 29.58 68.60 2.03 48.10 16 18 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 19 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 20 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 21 C 0.16 6.33 3.20 44.98 0.14 6.47 16 22 H 0.04 1.62 8.14 -2.39 -0.02 1.61 16 23 C -0.13 -4.81 7.73 71.98 0.56 -4.25 16 24 N -0.23 -8.33 12.04 -50.00 -0.60 -8.94 16 25 N -0.09 -2.82 13.67 37.02 0.51 -2.31 16 26 N -0.35 -7.53 3.28 -313.38 -1.03 -8.56 16 27 C 0.13 1.46 3.68 44.99 0.17 1.62 16 28 C -0.16 -1.56 9.47 71.98 0.68 -0.88 16 29 C -0.16 -1.62 9.47 71.98 0.68 -0.94 16 30 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.11 0.76 7.18 -2.39 -0.02 0.74 16 32 H 0.10 1.86 6.43 -2.39 -0.02 1.85 16 33 H 0.41 16.70 7.46 -92.71 -0.69 16.01 16 34 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.06 2.29 8.14 -2.39 -0.02 2.28 16 37 H 0.04 1.77 7.53 -2.39 -0.02 1.76 16 38 H 0.05 2.85 6.10 -2.38 -0.01 2.83 16 39 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 40 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 41 H 0.05 1.83 6.40 -2.39 -0.02 1.82 16 42 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.05 1.94 7.62 -2.39 -0.02 1.92 16 44 H 0.15 0.57 6.79 -2.39 -0.02 0.55 16 45 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 48 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 50 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -70.91 392.38 4.22 -66.69 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.26 Total: 24.04 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: 6.20 Total: 13.31 kcal Atomic # 7 Polarization: -128.30 SS G_CDS: -4.21 Total: -132.51 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.06 Total: -19.63 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -70.91 4.22 -66.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994141045.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.086 kcal (2) G-P(sol) polarization free energy of solvation -70.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds