Wall clock time and date at job start Tue Mar 31 2020 18:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36591 * 126.58127 * 2 1 4 4 C 1.47528 * 125.76914 * 359.97078 * 3 2 1 5 5 O 1.21594 * 120.00076 * 0.02562 * 4 3 2 6 6 N 1.34786 * 119.99866 * 180.02562 * 4 3 2 7 7 C 1.46498 * 119.99705 * 180.02562 * 6 4 3 8 8 H 1.08999 * 109.49933 * 34.93233 * 7 6 4 9 9 C 1.53042 * 109.49420 * 274.86887 * 7 6 4 10 10 C 1.53042 * 109.54090 * 301.35070 * 9 7 6 11 11 C 1.53188 * 109.33821 * 298.68433 * 10 9 7 12 12 N 1.46934 * 108.77841 * 54.61942 * 11 10 9 13 13 C 1.36935 * 120.63008 * 126.36447 * 12 11 10 14 14 H 1.08005 * 120.00023 * 221.17834 * 13 12 11 15 15 C 1.38810 * 120.00033 * 41.18598 * 13 12 11 16 16 N 1.31616 * 119.99858 * 214.83872 * 15 13 12 17 17 Si 1.86800 * 120.00140 * 34.83984 * 15 13 12 18 18 H 1.48508 * 109.47026 * 84.62611 * 17 15 13 19 19 H 1.48494 * 109.47187 * 204.62645 * 17 15 13 20 20 H 1.48501 * 109.46986 * 324.62805 * 17 15 13 21 21 C 1.46924 * 118.73428 * 306.39390 * 12 11 10 22 22 H 1.09005 * 109.58420 * 293.81461 * 21 12 11 23 23 C 1.53001 * 109.58711 * 173.53661 * 21 12 11 24 24 N 1.34396 * 108.46198 * 180.24057 * 3 2 1 25 25 N 1.28763 * 109.51960 * 359.58014 * 24 3 2 26 26 N 1.34811 * 126.58070 * 179.97438 * 2 1 3 27 27 C 1.46505 * 126.59406 * 0.02562 * 26 2 1 28 28 C 1.52997 * 109.47579 * 119.99445 * 27 26 2 29 29 C 1.53004 * 109.46707 * 239.99265 * 27 26 2 30 30 H 1.08999 * 109.46940 * 89.98081 * 1 2 3 31 31 H 1.08999 * 109.47015 * 209.98405 * 1 2 3 32 32 H 1.08999 * 109.47247 * 329.98207 * 1 2 3 33 33 H 0.96996 * 119.99701 * 0.02562 * 6 4 3 34 34 H 1.09003 * 109.43067 * 181.34618 * 9 7 6 35 35 H 1.08999 * 109.48941 * 61.38991 * 9 7 6 36 36 H 1.09000 * 109.49982 * 178.71933 * 10 9 7 37 37 H 1.09000 * 109.49602 * 58.65355 * 10 9 7 38 38 H 1.09008 * 109.58800 * 174.40421 * 11 10 9 39 39 H 1.09000 * 109.59410 * 294.68939 * 11 10 9 40 40 H 0.97006 * 120.00162 * 179.97438 * 16 15 13 41 41 H 1.09007 * 109.46756 * 59.99377 * 23 21 12 42 42 H 1.08993 * 109.47341 * 179.97438 * 23 21 12 43 43 H 1.09000 * 109.46786 * 300.00045 * 23 21 12 44 44 H 1.08998 * 109.47138 * 359.97438 * 27 26 2 45 45 H 1.08998 * 109.47252 * 59.99621 * 28 27 26 46 46 H 1.08996 * 109.47305 * 179.97438 * 28 27 26 47 47 H 1.09004 * 109.46531 * 300.00082 * 28 27 26 48 48 H 1.09000 * 109.46826 * 179.97438 * 29 27 26 49 49 H 1.08998 * 109.47103 * 299.99753 * 29 27 26 50 50 H 1.08999 * 109.47143 * 59.99913 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0968 0.0000 4 6 1.8737 2.5027 -0.0006 5 8 0.6859 2.7628 -0.0007 6 7 2.7818 3.4988 -0.0011 7 6 2.3376 4.8948 -0.0011 8 1 1.4247 4.9862 0.5875 9 6 2.0655 5.3441 -1.4386 10 6 3.3381 5.1860 -2.2738 11 6 4.4417 6.0735 -1.6898 12 7 4.6091 5.7457 -0.2673 13 6 5.8404 5.4151 0.2323 14 1 5.9352 4.6095 0.9455 15 6 6.9666 6.1153 -0.1776 16 7 8.1184 5.4916 -0.3067 17 14 6.8475 7.9427 -0.5462 18 1 6.9931 8.7126 0.7154 19 1 7.9276 8.3289 -1.4892 20 1 5.5271 8.2393 -1.1575 21 6 3.4299 5.7789 0.6086 22 1 3.0663 6.8030 0.6932 23 6 3.8059 5.2520 1.9950 24 7 3.5983 0.6789 -0.0054 25 7 3.6298 -0.6084 0.0002 26 7 2.3104 -1.0826 0.0005 27 6 1.8864 -2.4849 0.0006 28 6 2.4294 -3.1821 -1.2483 29 6 2.4289 -3.1816 1.2501 30 1 -0.3633 0.0003 -1.0277 31 1 -0.3633 -0.8901 0.5136 32 1 -0.3634 0.8898 0.5141 33 1 3.7293 3.2912 -0.0014 34 1 1.7581 6.3899 -1.4395 35 1 1.2717 4.7321 -1.8668 36 1 3.1375 5.4847 -3.3027 37 1 3.6596 4.1447 -2.2534 38 1 5.3767 5.8901 -2.2194 39 1 4.1619 7.1217 -1.7949 40 1 8.9055 5.9809 -0.5935 41 1 4.5911 5.8770 2.4205 42 1 2.9301 5.2779 2.6433 43 1 4.1645 4.2263 1.9089 44 1 0.7975 -2.5352 0.0007 45 1 3.5182 -3.1318 -1.2481 46 1 2.1142 -4.2255 -1.2480 47 1 2.0429 -2.6857 -2.1385 48 1 2.1130 -4.2248 1.2504 49 1 3.5177 -3.1312 1.2503 50 1 2.0420 -2.6849 2.1399 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994141048.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:45 Heat of formation + Delta-G solvation = 72.475045 kcal Electronic energy + Delta-G solvation = -30643.419642 eV Core-core repulsion = 26708.234507 eV Total energy + Delta-G solvation = -3935.185135 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.22609 -39.54141 -37.60386 -36.56608 -33.96258 -33.02238 -32.52944 -31.71950 -31.03196 -29.85624 -27.81370 -27.77196 -26.31401 -24.81710 -24.04032 -23.35583 -21.93634 -20.81360 -20.40615 -19.94291 -18.72976 -17.69167 -16.57985 -16.37814 -16.17283 -15.41201 -15.01408 -14.84215 -14.62789 -14.31725 -14.06974 -13.83623 -13.72027 -13.41253 -13.29135 -13.17450 -13.12003 -12.96718 -12.68518 -12.57918 -12.42569 -12.12868 -11.97033 -11.94368 -11.70173 -11.56184 -11.27457 -11.13662 -10.97458 -10.70903 -10.58526 -10.46610 -10.21594 -10.18061 -9.88090 -9.68904 -9.60819 -9.40796 -9.07110 -8.46814 -8.28667 -6.67453 -6.03224 -3.34612 1.16934 1.93058 1.95715 3.44353 3.54749 3.58328 3.60086 3.60942 4.02503 4.18706 4.36579 4.46967 4.58368 4.61952 4.85152 4.95764 4.97442 5.07349 5.16339 5.25236 5.26122 5.27356 5.35881 5.50406 5.52483 5.55942 5.64154 5.68859 5.71600 5.80065 5.85978 6.00798 6.10081 6.21573 6.23450 6.39598 6.43261 6.43837 6.50829 6.58325 6.66320 6.87404 6.96333 7.00690 7.08794 7.18235 7.93938 8.07417 8.21159 8.46520 8.62371 9.04186 9.76272 10.24292 11.11804 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016374 B = 0.003346 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.595466 B = 8365.948342 C = 9185.599434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.115 3.885 3 C -0.101 4.101 4 C 0.600 3.400 5 O -0.556 6.556 6 N -0.684 5.684 7 C 0.135 3.865 8 H 0.080 0.920 9 C -0.121 4.121 10 C -0.136 4.136 11 C 0.143 3.857 12 N -0.594 5.594 13 C -0.277 4.277 14 H 0.078 0.922 15 C 0.053 3.947 16 N -0.877 5.877 17 Si 0.842 3.158 18 H -0.289 1.289 19 H -0.299 1.299 20 H -0.260 1.260 21 C 0.156 3.844 22 H 0.041 0.959 23 C -0.134 4.134 24 N -0.192 5.192 25 N -0.066 5.066 26 N -0.361 5.361 27 C 0.145 3.855 28 C -0.163 4.163 29 C -0.163 4.163 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.419 0.581 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.024 0.976 40 H 0.262 0.738 41 H 0.066 0.934 42 H 0.039 0.961 43 H 0.058 0.942 44 H 0.107 0.893 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.063 0.937 48 H 0.080 0.920 49 H 0.075 0.925 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.768 -15.458 -0.009 22.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.023 4.023 3 C -0.240 4.240 4 C 0.384 3.616 5 O -0.435 6.435 6 N -0.334 5.334 7 C 0.028 3.972 8 H 0.098 0.902 9 C -0.159 4.159 10 C -0.175 4.175 11 C 0.018 3.982 12 N -0.319 5.319 13 C -0.404 4.404 14 H 0.096 0.904 15 C -0.150 4.150 16 N -0.515 5.515 17 Si 0.669 3.331 18 H -0.217 1.217 19 H -0.226 1.226 20 H -0.185 1.185 21 C 0.049 3.951 22 H 0.059 0.941 23 C -0.192 4.192 24 N -0.065 5.065 25 N -0.045 5.045 26 N -0.148 5.148 27 C 0.043 3.957 28 C -0.220 4.220 29 C -0.221 4.221 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.131 0.869 33 H 0.257 0.743 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.042 0.958 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.125 0.875 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.082 0.918 48 H 0.099 0.901 49 H 0.094 0.906 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.873 -15.689 -0.033 22.318 hybrid contribution -0.350 1.125 -0.289 1.213 sum -16.223 -14.565 -0.322 21.804 Atomic orbital electron populations 1.20673 0.85053 1.05048 1.04364 1.21863 0.96050 0.86506 0.97871 1.21346 0.88994 0.95628 1.18072 1.16753 0.85666 0.82562 0.76628 1.90696 1.16048 1.83743 1.53002 1.45840 1.10904 1.05280 1.71356 1.21539 0.98387 0.80594 0.96646 0.90187 1.21776 0.97831 1.00638 0.95704 1.22009 0.96277 1.01678 0.97532 1.21299 0.96794 0.95003 0.85120 1.44407 1.04133 1.81081 1.02258 1.18578 0.81458 1.12872 1.27518 0.90426 1.25575 0.94954 0.97302 0.97179 1.70093 1.01297 1.35394 1.44759 0.87390 0.77925 0.90160 0.77608 1.21669 1.22585 1.18485 1.20854 0.87976 0.95261 0.90963 0.94100 1.21756 1.00090 1.02184 0.95169 1.74757 1.18868 1.03859 1.09063 1.81977 0.95984 1.03498 1.23029 1.50649 1.06513 1.07015 1.50668 1.21586 1.00254 0.75594 0.98230 1.22153 1.03394 1.00670 0.95829 1.22161 1.03412 1.00690 0.95834 0.89357 0.91138 0.86941 0.74258 0.91827 0.92636 0.93204 0.91969 0.91544 0.95826 0.92782 0.91543 0.94243 0.92321 0.87519 0.90575 0.90065 0.91757 0.90071 0.90567 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.85 9.41 36.01 0.34 -0.51 16 2 C 0.11 1.47 7.02 -81.88 -0.57 0.90 16 3 C -0.10 -1.65 6.99 -83.55 -0.58 -2.23 16 4 C 0.60 10.42 7.78 -12.47 -0.10 10.33 16 5 O -0.56 -9.92 14.38 5.28 0.08 -9.84 16 6 N -0.68 -12.33 3.46 -54.73 -0.19 -12.52 16 7 C 0.13 2.36 2.33 -67.81 -0.16 2.20 16 8 H 0.08 1.36 7.58 -51.93 -0.39 0.97 16 9 C -0.12 -2.04 5.58 -26.69 -0.15 -2.19 16 10 C -0.14 -2.48 5.93 -26.61 -0.16 -2.64 16 11 C 0.14 3.06 4.59 -3.71 -0.02 3.04 16 12 N -0.59 -13.41 2.13 -164.77 -0.35 -13.76 16 13 C -0.28 -7.30 8.42 -15.06 -0.13 -7.42 16 14 H 0.08 2.21 6.83 -52.48 -0.36 1.85 16 15 C 0.05 1.47 4.82 -17.43 -0.08 1.39 16 16 N -0.88 -26.06 13.97 55.49 0.78 -25.29 16 17 Si 0.84 21.17 27.39 -169.99 -4.66 16.51 16 18 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 19 H -0.30 -7.68 7.11 56.52 0.40 -7.27 16 20 H -0.26 -6.26 5.24 56.52 0.30 -5.96 16 21 C 0.16 3.02 3.19 -67.60 -0.22 2.80 16 22 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 23 C -0.13 -2.52 7.86 37.16 0.29 -2.23 16 24 N -0.19 -3.44 12.04 32.85 0.40 -3.04 16 25 N -0.07 -1.03 13.67 60.35 0.82 -0.21 16 26 N -0.36 -4.29 3.28 -50.41 -0.17 -4.45 16 27 C 0.14 1.05 3.68 -67.93 -0.25 0.80 16 28 C -0.16 -1.06 9.47 37.16 0.35 -0.70 16 29 C -0.16 -1.05 9.47 37.16 0.35 -0.70 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.42 7.18 -51.93 -0.37 0.05 16 32 H 0.11 1.22 6.43 -51.93 -0.33 0.89 16 33 H 0.42 8.40 7.47 -40.82 -0.30 8.09 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.06 1.22 7.53 -51.93 -0.39 0.83 16 38 H 0.07 1.55 7.02 -51.92 -0.36 1.19 16 39 H 0.02 0.51 6.71 -51.93 -0.35 0.16 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.07 1.34 7.68 -51.93 -0.40 0.94 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 1.16 6.38 -51.93 -0.33 0.83 16 44 H 0.11 0.50 6.79 -51.93 -0.35 0.15 16 45 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 389.92 15.07 5.88 5.88 Total: -1.00 -31.77 389.92 -6.76 -38.53 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -8.26 Total: 5.36 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -1.08 Total: 2.84 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: 1.29 Total: -59.27 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.08 Total: -9.84 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.66 Total: 16.51 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.77 -6.76 -38.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994141048.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.002 kcal (2) G-P(sol) polarization free energy of solvation -31.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds