Wall clock time and date at job start Tue Mar 31 2020 18:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36591 * 126.58127 * 2 1 4 4 C 1.47528 * 125.76914 * 359.97078 * 3 2 1 5 5 O 1.21594 * 120.00076 * 0.02562 * 4 3 2 6 6 N 1.34786 * 119.99866 * 180.02562 * 4 3 2 7 7 C 1.46498 * 119.99705 * 180.02562 * 6 4 3 8 8 H 1.08999 * 109.49933 * 34.93233 * 7 6 4 9 9 C 1.53042 * 109.49420 * 274.86887 * 7 6 4 10 10 C 1.53042 * 109.54090 * 301.35070 * 9 7 6 11 11 C 1.53188 * 109.33821 * 298.68433 * 10 9 7 12 12 N 1.46934 * 108.77841 * 54.61942 * 11 10 9 13 13 C 1.36935 * 120.63008 * 126.36447 * 12 11 10 14 14 H 1.08005 * 120.00023 * 221.17834 * 13 12 11 15 15 C 1.38810 * 120.00033 * 41.18598 * 13 12 11 16 16 N 1.31616 * 119.99858 * 214.83872 * 15 13 12 17 17 Si 1.86800 * 120.00140 * 34.83984 * 15 13 12 18 18 H 1.48508 * 109.47026 * 84.62611 * 17 15 13 19 19 H 1.48494 * 109.47187 * 204.62645 * 17 15 13 20 20 H 1.48501 * 109.46986 * 324.62805 * 17 15 13 21 21 C 1.46924 * 118.73428 * 306.39390 * 12 11 10 22 22 H 1.09005 * 109.58420 * 293.81461 * 21 12 11 23 23 C 1.53001 * 109.58711 * 173.53661 * 21 12 11 24 24 N 1.34396 * 108.46198 * 180.24057 * 3 2 1 25 25 N 1.28763 * 109.51960 * 359.58014 * 24 3 2 26 26 N 1.34811 * 126.58070 * 179.97438 * 2 1 3 27 27 C 1.46505 * 126.59406 * 0.02562 * 26 2 1 28 28 C 1.52997 * 109.47579 * 119.99445 * 27 26 2 29 29 C 1.53004 * 109.46707 * 239.99265 * 27 26 2 30 30 H 1.08999 * 109.46940 * 89.98081 * 1 2 3 31 31 H 1.08999 * 109.47015 * 209.98405 * 1 2 3 32 32 H 1.08999 * 109.47247 * 329.98207 * 1 2 3 33 33 H 0.96996 * 119.99701 * 0.02562 * 6 4 3 34 34 H 1.09003 * 109.43067 * 181.34618 * 9 7 6 35 35 H 1.08999 * 109.48941 * 61.38991 * 9 7 6 36 36 H 1.09000 * 109.49982 * 178.71933 * 10 9 7 37 37 H 1.09000 * 109.49602 * 58.65355 * 10 9 7 38 38 H 1.09008 * 109.58800 * 174.40421 * 11 10 9 39 39 H 1.09000 * 109.59410 * 294.68939 * 11 10 9 40 40 H 0.97006 * 120.00162 * 179.97438 * 16 15 13 41 41 H 1.09007 * 109.46756 * 59.99377 * 23 21 12 42 42 H 1.08993 * 109.47341 * 179.97438 * 23 21 12 43 43 H 1.09000 * 109.46786 * 300.00045 * 23 21 12 44 44 H 1.08998 * 109.47138 * 359.97438 * 27 26 2 45 45 H 1.08998 * 109.47252 * 59.99621 * 28 27 26 46 46 H 1.08996 * 109.47305 * 179.97438 * 28 27 26 47 47 H 1.09004 * 109.46531 * 300.00082 * 28 27 26 48 48 H 1.09000 * 109.46826 * 179.97438 * 29 27 26 49 49 H 1.08998 * 109.47103 * 299.99753 * 29 27 26 50 50 H 1.08999 * 109.47143 * 59.99913 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0968 0.0000 4 6 1.8737 2.5027 -0.0006 5 8 0.6859 2.7628 -0.0007 6 7 2.7818 3.4988 -0.0011 7 6 2.3376 4.8948 -0.0011 8 1 1.4247 4.9862 0.5875 9 6 2.0655 5.3441 -1.4386 10 6 3.3381 5.1860 -2.2738 11 6 4.4417 6.0735 -1.6898 12 7 4.6091 5.7457 -0.2673 13 6 5.8404 5.4151 0.2323 14 1 5.9352 4.6095 0.9455 15 6 6.9666 6.1153 -0.1776 16 7 8.1184 5.4916 -0.3067 17 14 6.8475 7.9427 -0.5462 18 1 6.9931 8.7126 0.7154 19 1 7.9276 8.3289 -1.4892 20 1 5.5271 8.2393 -1.1575 21 6 3.4299 5.7789 0.6086 22 1 3.0663 6.8030 0.6932 23 6 3.8059 5.2520 1.9950 24 7 3.5983 0.6789 -0.0054 25 7 3.6298 -0.6084 0.0002 26 7 2.3104 -1.0826 0.0005 27 6 1.8864 -2.4849 0.0006 28 6 2.4294 -3.1821 -1.2483 29 6 2.4289 -3.1816 1.2501 30 1 -0.3633 0.0003 -1.0277 31 1 -0.3633 -0.8901 0.5136 32 1 -0.3634 0.8898 0.5141 33 1 3.7293 3.2912 -0.0014 34 1 1.7581 6.3899 -1.4395 35 1 1.2717 4.7321 -1.8668 36 1 3.1375 5.4847 -3.3027 37 1 3.6596 4.1447 -2.2534 38 1 5.3767 5.8901 -2.2194 39 1 4.1619 7.1217 -1.7949 40 1 8.9055 5.9809 -0.5935 41 1 4.5911 5.8770 2.4205 42 1 2.9301 5.2779 2.6433 43 1 4.1645 4.2263 1.9089 44 1 0.7975 -2.5352 0.0007 45 1 3.5182 -3.1318 -1.2481 46 1 2.1142 -4.2255 -1.2480 47 1 2.0429 -2.6857 -2.1385 48 1 2.1130 -4.2248 1.2504 49 1 3.5177 -3.1312 1.2503 50 1 2.0420 -2.6849 2.1399 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994141048.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:44 Heat of formation + Delta-G solvation = 51.728630 kcal Electronic energy + Delta-G solvation = -30644.319274 eV Core-core repulsion = 26708.234507 eV Total energy + Delta-G solvation = -3936.084767 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -43.30192 -40.96183 -39.10181 -37.35036 -35.59078 -34.22085 -33.91978 -33.45865 -32.27076 -31.27959 -28.82213 -28.28290 -27.86297 -26.64854 -25.04523 -24.60006 -23.49324 -22.34134 -21.47533 -21.13616 -20.23274 -18.77944 -18.35165 -17.44117 -17.23425 -17.01579 -16.72310 -15.98201 -15.90674 -15.61214 -15.28976 -15.15882 -15.07822 -14.78167 -14.45304 -14.31170 -14.16896 -14.00088 -13.94192 -13.83902 -13.46238 -13.21694 -13.19980 -12.92936 -12.83032 -12.73838 -12.61825 -12.52932 -12.36241 -12.31056 -12.13836 -11.89769 -11.88986 -11.53593 -11.44217 -11.13007 -11.11113 -10.98640 -10.42643 -10.22450 -9.81291 -8.57659 -8.18738 -5.45392 0.16157 0.67894 1.10653 1.41420 1.48730 1.56571 2.29444 2.31954 2.52728 3.00856 3.23230 3.34670 3.43076 3.60102 3.76653 3.81186 3.97340 4.00889 4.06629 4.14424 4.18407 4.34692 4.53503 4.55471 4.62054 4.63755 4.64404 4.67746 4.71451 4.74165 4.75202 4.86795 4.94662 4.95867 4.98062 5.10516 5.13825 5.15830 5.17711 5.23336 5.29373 5.33542 5.47394 5.51837 5.61122 5.71130 5.99976 6.33499 6.58459 6.97729 7.07185 7.24790 7.71781 8.21458 9.00966 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016374 B = 0.003346 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.595466 B = 8365.948342 C = 9185.599434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.130 3.870 3 C -0.134 4.134 4 C 0.602 3.398 5 O -0.561 6.561 6 N -0.691 5.691 7 C 0.139 3.861 8 H 0.094 0.906 9 C -0.114 4.114 10 C -0.125 4.125 11 C 0.141 3.859 12 N -0.603 5.603 13 C -0.252 4.252 14 H 0.045 0.955 15 C -0.001 4.001 16 N -0.929 5.929 17 Si 0.903 3.097 18 H -0.295 1.295 19 H -0.307 1.307 20 H -0.239 1.239 21 C 0.154 3.846 22 H 0.058 0.942 23 C -0.127 4.127 24 N -0.234 5.234 25 N -0.093 5.093 26 N -0.346 5.346 27 C 0.131 3.869 28 C -0.159 4.159 29 C -0.160 4.160 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.407 0.593 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.041 0.959 38 H 0.039 0.961 39 H 0.034 0.966 40 H 0.260 0.740 41 H 0.046 0.954 42 H 0.069 0.931 43 H 0.038 0.962 44 H 0.146 0.854 45 H 0.051 0.949 46 H 0.115 0.885 47 H 0.058 0.942 48 H 0.115 0.885 49 H 0.051 0.949 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.838 -16.178 -0.412 26.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.009 4.009 3 C -0.274 4.274 4 C 0.387 3.613 5 O -0.441 6.441 6 N -0.339 5.339 7 C 0.033 3.967 8 H 0.112 0.888 9 C -0.152 4.152 10 C -0.164 4.164 11 C 0.016 3.984 12 N -0.328 5.328 13 C -0.382 4.382 14 H 0.063 0.937 15 C -0.199 4.199 16 N -0.571 5.571 17 Si 0.730 3.270 18 H -0.223 1.223 19 H -0.235 1.235 20 H -0.163 1.163 21 C 0.048 3.952 22 H 0.076 0.924 23 C -0.185 4.185 24 N -0.106 5.106 25 N -0.072 5.072 26 N -0.133 5.133 27 C 0.032 3.968 28 C -0.217 4.217 29 C -0.218 4.218 30 H 0.123 0.877 31 H 0.129 0.871 32 H 0.116 0.884 33 H 0.243 0.757 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.057 0.943 44 H 0.164 0.836 45 H 0.070 0.930 46 H 0.134 0.866 47 H 0.077 0.923 48 H 0.134 0.866 49 H 0.071 0.929 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.993 -16.420 -0.439 25.875 hybrid contribution 0.807 1.144 -0.127 1.406 sum -19.186 -15.275 -0.566 24.531 Atomic orbital electron populations 1.20830 0.81940 1.06295 1.05703 1.22403 0.97542 0.85588 0.95405 1.21464 0.89381 0.96106 1.20483 1.16864 0.85439 0.82919 0.76062 1.90676 1.15922 1.84033 1.53434 1.45891 1.10303 1.05808 1.71916 1.21507 0.97783 0.80022 0.97381 0.88839 1.21741 0.96913 1.01972 0.94583 1.21868 0.95859 0.99642 0.99067 1.21306 0.96755 0.96134 0.84164 1.44467 1.03773 1.81134 1.03438 1.18418 0.83115 1.11100 1.25521 0.93734 1.26061 0.94742 1.00613 0.98519 1.70195 1.02187 1.36654 1.48050 0.86413 0.78448 0.85226 0.76894 1.22281 1.23497 1.16255 1.21032 0.87045 0.96594 0.90514 0.92411 1.21670 1.00677 1.00466 0.95652 1.74726 1.20362 1.04973 1.10560 1.81862 0.98363 1.02900 1.24071 1.51026 1.05128 1.08600 1.48538 1.22212 1.02529 0.73092 0.98922 1.22163 1.01834 1.02591 0.95125 1.22172 1.01862 1.02609 0.95123 0.87694 0.87136 0.88405 0.75725 0.89801 0.91934 0.90764 0.94027 0.94283 0.94780 0.93107 0.93446 0.91209 0.94275 0.83610 0.92952 0.86629 0.92313 0.86636 0.92940 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.33 9.41 71.24 0.67 -0.66 16 2 C 0.13 3.14 7.02 41.72 0.29 3.43 16 3 C -0.13 -4.41 6.99 40.82 0.29 -4.12 16 4 C 0.60 20.73 7.78 86.69 0.67 21.41 16 5 O -0.56 -19.15 14.38 -4.01 -0.06 -19.20 16 6 N -0.69 -24.99 3.46 -445.33 -1.54 -26.53 16 7 C 0.14 4.63 2.33 45.07 0.10 4.73 16 8 H 0.09 2.92 7.58 -2.39 -0.02 2.90 16 9 C -0.11 -3.52 5.58 30.62 0.17 -3.35 16 10 C -0.13 -4.39 5.93 30.67 0.18 -4.21 16 11 C 0.14 5.91 4.59 86.36 0.40 6.31 16 12 N -0.60 -27.20 2.13 -675.21 -1.43 -28.63 16 13 C -0.25 -13.76 8.42 84.03 0.71 -13.05 16 14 H 0.05 2.70 6.83 -2.91 -0.02 2.68 16 15 C 0.00 -0.04 4.82 84.86 0.41 0.37 16 16 N -0.93 -57.73 13.97 21.65 0.30 -57.43 16 17 Si 0.90 44.62 27.39 68.60 1.88 46.50 16 18 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 19 H -0.31 -15.54 7.11 99.48 0.71 -14.84 16 20 H -0.24 -10.82 5.24 99.48 0.52 -10.30 16 21 C 0.15 5.75 3.19 44.97 0.14 5.90 16 22 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 23 C -0.13 -4.76 7.86 71.98 0.57 -4.19 16 24 N -0.23 -8.75 12.04 -50.00 -0.60 -9.35 16 25 N -0.09 -3.02 13.67 37.02 0.51 -2.52 16 26 N -0.35 -7.82 3.28 -313.39 -1.03 -8.85 16 27 C 0.13 1.55 3.68 44.99 0.17 1.71 16 28 C -0.16 -1.72 9.47 71.98 0.68 -1.04 16 29 C -0.16 -1.71 9.47 71.98 0.68 -1.03 16 30 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.11 0.76 7.18 -2.39 -0.02 0.74 16 32 H 0.10 1.86 6.43 -2.39 -0.02 1.84 16 33 H 0.41 17.01 7.47 -92.71 -0.69 16.31 16 34 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.04 1.63 7.53 -2.39 -0.02 1.61 16 38 H 0.04 1.83 7.02 -2.38 -0.02 1.81 16 39 H 0.03 1.37 6.71 -2.39 -0.02 1.36 16 40 H 0.26 15.46 8.31 -92.70 -0.77 14.69 16 41 H 0.05 1.92 7.68 -2.38 -0.02 1.91 16 42 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.04 1.60 6.38 -2.39 -0.02 1.58 16 44 H 0.15 0.64 6.79 -2.39 -0.02 0.62 16 45 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 48 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 49 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -73.45 389.92 4.22 -69.23 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.07 Total: 24.57 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 6.13 Total: 12.21 kcal Atomic # 7 Polarization: -129.51 SS G_CDS: -3.80 Total: -133.31 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.06 Total: -19.20 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.88 Total: 46.50 kcal Total: -73.45 4.22 -69.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994141048.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.959 kcal (2) G-P(sol) polarization free energy of solvation -73.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds