Wall clock time and date at job start Tue Mar 31 2020 18:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36603 * 126.57559 * 2 1 4 4 C 1.47522 * 125.77008 * 0.02562 * 3 2 1 5 5 O 1.21591 * 120.00159 * 359.70590 * 4 3 2 6 6 N 1.34770 * 119.99917 * 179.97438 * 4 3 2 7 7 C 1.46499 * 120.00355 * 179.71912 * 6 4 3 8 8 H 1.09004 * 109.49972 * 325.00239 * 7 6 4 9 9 C 1.53049 * 109.49678 * 85.06315 * 7 6 4 10 10 C 1.53036 * 109.53930 * 181.28507 * 9 7 6 11 11 C 1.53185 * 109.34040 * 298.68496 * 10 9 7 12 12 N 1.46930 * 108.77624 * 54.62110 * 11 10 9 13 13 C 1.36939 * 120.63170 * 126.41183 * 12 11 10 14 14 H 1.07993 * 119.99876 * 209.03557 * 13 12 11 15 15 C 1.38810 * 120.00047 * 29.03472 * 13 12 11 16 16 N 1.31625 * 119.99880 * 15.04969 * 15 13 12 17 17 Si 1.86795 * 120.00160 * 195.05311 * 15 13 12 18 18 H 1.48498 * 109.47363 * 59.99772 * 17 15 13 19 19 H 1.48502 * 109.47591 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47320 * 299.99809 * 17 15 13 21 21 C 1.46921 * 118.73717 * 306.38909 * 12 11 10 22 22 H 1.09006 * 109.58982 * 293.82308 * 21 12 11 23 23 C 1.52996 * 109.58544 * 173.39721 * 21 12 11 24 24 N 1.34398 * 108.45739 * 179.73825 * 3 2 1 25 25 N 1.28763 * 109.52387 * 0.26818 * 24 3 2 26 26 N 1.34814 * 126.58520 * 180.19522 * 2 1 3 27 27 C 1.46493 * 126.59254 * 359.97438 * 26 2 1 28 28 C 1.53004 * 109.47138 * 120.29108 * 27 26 2 29 29 C 1.53004 * 109.46906 * 240.28516 * 27 26 2 30 30 H 1.09001 * 109.47370 * 90.02289 * 1 2 3 31 31 H 1.09008 * 109.46604 * 210.01691 * 1 2 3 32 32 H 1.08996 * 109.47354 * 330.01758 * 1 2 3 33 33 H 0.97006 * 120.00475 * 359.71919 * 6 4 3 34 34 H 1.09001 * 109.45669 * 301.33925 * 9 7 6 35 35 H 1.08997 * 109.45858 * 61.30024 * 9 7 6 36 36 H 1.08998 * 109.49524 * 178.71059 * 10 9 7 37 37 H 1.09006 * 109.49654 * 58.65420 * 10 9 7 38 38 H 1.09000 * 109.59011 * 294.82966 * 11 10 9 39 39 H 1.09010 * 109.70247 * 174.47470 * 11 10 9 40 40 H 0.97006 * 119.99460 * 180.02562 * 16 15 13 41 41 H 1.08997 * 109.47390 * 300.70689 * 23 21 12 42 42 H 1.08998 * 109.47588 * 60.71484 * 23 21 12 43 43 H 1.09006 * 109.47247 * 180.70918 * 23 21 12 44 44 H 1.08996 * 109.47472 * 0.28581 * 27 26 2 45 45 H 1.08993 * 109.47601 * 59.99881 * 28 27 26 46 46 H 1.09001 * 109.46971 * 179.97438 * 28 27 26 47 47 H 1.09001 * 109.46720 * 299.99192 * 28 27 26 48 48 H 1.09001 * 109.47215 * 179.97438 * 29 27 26 49 49 H 1.08993 * 109.47377 * 299.99840 * 29 27 26 50 50 H 1.08997 * 109.47286 * 60.00388 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8736 2.5028 0.0005 5 8 0.6858 2.7628 -0.0044 6 7 2.7814 3.4988 0.0010 7 6 2.3373 4.8948 -0.0047 8 1 1.4270 4.9847 -0.5976 9 6 2.0588 5.3481 1.4304 10 6 1.5641 6.7963 1.4228 11 6 2.6503 7.7004 0.8317 12 7 3.0265 7.1844 -0.4916 13 6 3.0001 7.9995 -1.5917 14 1 2.8107 7.5812 -2.5691 15 6 3.2166 9.3633 -1.4503 16 7 3.7334 9.8356 -0.3357 17 14 2.7744 10.5284 -2.8419 18 1 1.3218 10.4239 -3.1323 19 1 3.1001 11.9214 -2.4437 20 1 3.5492 10.1661 -4.0559 21 6 3.4322 5.7775 -0.6120 22 1 4.3680 5.6197 -0.0757 23 6 3.6176 5.4217 -2.0884 24 7 3.5983 0.6791 0.0058 25 7 3.6299 -0.6082 0.0038 26 7 2.3105 -1.0825 -0.0037 27 6 1.8866 -2.4847 -0.0079 28 6 2.4350 -3.1796 -1.2559 29 6 2.4239 -3.1838 1.2425 30 1 -0.3634 -0.0004 -1.0277 31 1 -0.3633 -0.8899 0.5141 32 1 -0.3634 0.8901 0.5135 33 1 3.7291 3.2915 0.0051 34 1 1.2971 4.7060 1.8726 35 1 2.9752 5.2811 2.0166 36 1 1.3442 7.1109 2.4430 37 1 0.6608 6.8690 0.8170 38 1 3.5223 7.6996 1.4857 39 1 2.2687 8.7167 0.7326 40 1 3.8843 10.7887 -0.2369 41 1 2.6817 5.5866 -2.6222 42 1 4.3970 6.0506 -2.5187 43 1 3.9063 4.3742 -2.1763 44 1 0.7978 -2.5352 -0.0128 45 1 3.5237 -3.1293 -1.2510 46 1 2.1199 -4.2231 -1.2588 47 1 2.0522 -2.6816 -2.1468 48 1 2.1081 -4.2270 1.2397 49 1 3.5126 -3.1334 1.2474 50 1 2.0333 -2.6888 2.1316 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994141058.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:54 Heat of formation + Delta-G solvation = 67.585848 kcal Electronic energy + Delta-G solvation = -29867.441690 eV Core-core repulsion = 25932.044544 eV Total energy + Delta-G solvation = -3935.397146 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.40856 -39.46860 -37.53850 -36.71780 -34.32275 -33.16894 -32.52416 -31.69076 -31.06749 -29.23198 -27.90467 -27.88033 -26.12299 -24.96406 -24.20915 -23.41969 -21.63185 -20.66583 -20.54300 -19.91187 -19.28560 -17.73090 -16.58504 -16.37259 -16.32279 -15.61632 -15.00463 -14.88832 -14.55527 -14.34657 -14.04690 -13.79117 -13.69022 -13.50140 -13.41977 -13.28703 -13.23480 -12.83128 -12.73477 -12.68380 -12.48187 -12.13479 -12.07819 -11.73175 -11.64164 -11.47344 -11.20615 -11.04013 -10.86344 -10.70754 -10.52039 -10.37638 -10.23219 -10.08177 -9.99932 -9.91011 -9.59268 -9.33772 -9.21366 -8.57476 -8.39414 -6.62229 -5.74491 -3.18604 1.00198 1.72788 1.78408 3.38665 3.42102 3.45303 3.47258 3.49560 3.88159 4.03326 4.23317 4.34701 4.42565 4.52994 4.69015 4.81731 4.95112 5.02707 5.12647 5.15871 5.24374 5.35136 5.40749 5.45936 5.54003 5.55612 5.59097 5.66923 5.69330 5.85433 5.88365 6.04195 6.16816 6.27471 6.29286 6.41007 6.50363 6.59897 6.69633 6.78531 6.82045 6.91995 7.06012 7.14369 7.45839 7.71398 7.73595 7.85995 7.97538 8.43951 8.50988 9.25220 9.87912 10.44395 11.34102 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.025374 B = 0.002458 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.221928 B =11386.947131 C =11676.451398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.119 3.881 3 C -0.101 4.101 4 C 0.602 3.398 5 O -0.542 6.542 6 N -0.701 5.701 7 C 0.132 3.868 8 H 0.088 0.912 9 C -0.117 4.117 10 C -0.139 4.139 11 C 0.168 3.832 12 N -0.582 5.582 13 C -0.250 4.250 14 H 0.070 0.930 15 C 0.003 3.997 16 N -0.903 5.903 17 Si 0.903 3.097 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.283 1.283 21 C 0.167 3.833 22 H 0.029 0.971 23 C -0.137 4.137 24 N -0.203 5.203 25 N -0.068 5.068 26 N -0.359 5.359 27 C 0.144 3.856 28 C -0.162 4.162 29 C -0.163 4.163 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.114 0.886 33 H 0.404 0.596 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.019 0.981 39 H 0.090 0.910 40 H 0.254 0.746 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.109 0.891 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.064 0.936 48 H 0.082 0.918 49 H 0.074 0.926 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.497 -26.339 2.546 27.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.018 4.018 3 C -0.241 4.241 4 C 0.386 3.614 5 O -0.419 6.419 6 N -0.350 5.350 7 C 0.026 3.974 8 H 0.106 0.894 9 C -0.156 4.156 10 C -0.179 4.179 11 C 0.043 3.957 12 N -0.305 5.305 13 C -0.379 4.379 14 H 0.088 0.912 15 C -0.196 4.196 16 N -0.548 5.548 17 Si 0.732 3.268 18 H -0.210 1.210 19 H -0.217 1.217 20 H -0.209 1.209 21 C 0.060 3.940 22 H 0.047 0.953 23 C -0.195 4.195 24 N -0.076 5.076 25 N -0.047 5.047 26 N -0.146 5.146 27 C 0.043 3.957 28 C -0.220 4.220 29 C -0.221 4.221 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.132 0.868 33 H 0.238 0.762 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.037 0.963 39 H 0.108 0.892 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.058 0.942 44 H 0.127 0.873 45 H 0.093 0.907 46 H 0.100 0.900 47 H 0.083 0.917 48 H 0.100 0.900 49 H 0.093 0.907 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.793 -26.357 2.566 26.911 hybrid contribution -0.661 0.587 -0.591 1.063 sum -5.453 -25.769 1.975 26.414 Atomic orbital electron populations 1.20718 0.84849 1.05240 1.04609 1.21923 0.96207 0.86391 0.97288 1.21368 0.88935 0.95676 1.18095 1.16710 0.85775 0.82340 0.76623 1.90747 1.15927 1.83533 1.51682 1.45942 1.09842 1.06355 1.72865 1.21837 1.00312 0.77985 0.97235 0.89418 1.21771 1.00345 0.97348 0.96108 1.22176 1.00995 0.94904 0.99836 1.20859 0.92944 0.97130 0.84777 1.44038 1.76613 1.04342 1.05527 1.19135 1.42146 0.88584 0.88084 0.91216 1.25073 0.99160 0.98112 0.97225 1.70018 1.45603 1.12826 1.26323 0.86370 0.78474 0.80118 0.81791 1.21029 1.21706 1.20923 1.20560 0.92885 0.86159 0.94434 0.95336 1.21821 1.02219 0.98822 0.96597 1.74625 1.19133 1.04108 1.09769 1.81907 0.96280 1.03334 1.23171 1.50613 1.06367 1.07135 1.50532 1.21623 1.00441 0.75406 0.98273 1.22153 1.03229 1.00815 0.95830 1.22163 1.03298 1.00813 0.95817 0.89107 0.90982 0.86802 0.76153 0.93144 0.92710 0.93042 0.92512 0.96332 0.89219 0.93641 0.92698 0.91788 0.94160 0.87342 0.90664 0.89957 0.91682 0.89959 0.90657 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 9.40 36.01 0.34 -0.46 16 2 C 0.12 1.36 7.02 -81.87 -0.57 0.79 16 3 C -0.10 -1.45 6.99 -83.55 -0.58 -2.04 16 4 C 0.60 9.81 7.78 -12.48 -0.10 9.71 16 5 O -0.54 -9.76 14.38 5.29 0.08 -9.68 16 6 N -0.70 -11.48 4.57 -54.73 -0.25 -11.73 16 7 C 0.13 2.47 1.99 -67.81 -0.14 2.34 16 8 H 0.09 1.84 7.58 -51.93 -0.39 1.44 16 9 C -0.12 -2.16 5.46 -26.69 -0.15 -2.31 16 10 C -0.14 -2.78 6.08 -26.62 -0.16 -2.94 16 11 C 0.17 4.03 5.29 -3.71 -0.02 4.02 16 12 N -0.58 -14.40 2.99 -164.78 -0.49 -14.90 16 13 C -0.25 -6.72 8.61 -15.06 -0.13 -6.85 16 14 H 0.07 1.84 6.20 -52.49 -0.33 1.51 16 15 C 0.00 0.08 4.96 -17.43 -0.09 -0.01 16 16 N -0.90 -26.05 11.14 55.49 0.62 -25.43 16 17 Si 0.90 21.74 29.58 -169.99 -5.03 16.71 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C 0.17 3.49 3.03 -67.61 -0.21 3.29 16 22 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 23 C -0.14 -2.67 7.84 37.16 0.29 -2.38 16 24 N -0.20 -2.99 12.04 32.85 0.40 -2.60 16 25 N -0.07 -0.89 13.67 60.35 0.82 -0.06 16 26 N -0.36 -3.63 3.28 -50.41 -0.17 -3.79 16 27 C 0.14 0.84 3.68 -67.93 -0.25 0.59 16 28 C -0.16 -0.81 9.47 37.16 0.35 -0.46 16 29 C -0.16 -0.80 9.47 37.16 0.35 -0.45 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.38 7.20 -51.92 -0.37 0.00 16 32 H 0.11 1.19 6.43 -51.93 -0.33 0.85 16 33 H 0.40 6.17 8.29 -40.82 -0.34 5.83 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.09 2.39 6.06 -51.92 -0.31 2.08 16 40 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 41 H 0.05 1.10 7.40 -51.93 -0.38 0.72 16 42 H 0.06 1.32 7.66 -51.93 -0.40 0.92 16 43 H 0.04 0.68 7.79 -51.93 -0.40 0.27 16 44 H 0.11 0.38 6.79 -51.93 -0.35 0.03 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 395.59 15.07 5.96 5.96 Total: -1.00 -31.94 395.59 -7.37 -39.31 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -8.25 Total: 3.38 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -1.06 Total: 2.82 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: 0.93 Total: -58.51 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.08 Total: -9.68 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.94 -7.37 -39.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994141058.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.896 kcal (2) G-P(sol) polarization free energy of solvation -31.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds