Wall clock time and date at job start Tue Mar 31 2020 18:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36603 * 126.57559 * 2 1 4 4 C 1.47522 * 125.77008 * 0.02562 * 3 2 1 5 5 O 1.21591 * 120.00159 * 359.70590 * 4 3 2 6 6 N 1.34770 * 119.99917 * 179.97438 * 4 3 2 7 7 C 1.46499 * 120.00355 * 179.71912 * 6 4 3 8 8 H 1.09004 * 109.49972 * 325.00239 * 7 6 4 9 9 C 1.53049 * 109.49678 * 85.06315 * 7 6 4 10 10 C 1.53036 * 109.53930 * 181.28507 * 9 7 6 11 11 C 1.53185 * 109.34040 * 298.68496 * 10 9 7 12 12 N 1.46930 * 108.77624 * 54.62110 * 11 10 9 13 13 C 1.36939 * 120.63170 * 126.41183 * 12 11 10 14 14 H 1.07993 * 119.99876 * 209.03557 * 13 12 11 15 15 C 1.38810 * 120.00047 * 29.03472 * 13 12 11 16 16 N 1.31625 * 119.99880 * 15.04969 * 15 13 12 17 17 Si 1.86795 * 120.00160 * 195.05311 * 15 13 12 18 18 H 1.48498 * 109.47363 * 59.99772 * 17 15 13 19 19 H 1.48502 * 109.47591 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47320 * 299.99809 * 17 15 13 21 21 C 1.46921 * 118.73717 * 306.38909 * 12 11 10 22 22 H 1.09006 * 109.58982 * 293.82308 * 21 12 11 23 23 C 1.52996 * 109.58544 * 173.39721 * 21 12 11 24 24 N 1.34398 * 108.45739 * 179.73825 * 3 2 1 25 25 N 1.28763 * 109.52387 * 0.26818 * 24 3 2 26 26 N 1.34814 * 126.58520 * 180.19522 * 2 1 3 27 27 C 1.46493 * 126.59254 * 359.97438 * 26 2 1 28 28 C 1.53004 * 109.47138 * 120.29108 * 27 26 2 29 29 C 1.53004 * 109.46906 * 240.28516 * 27 26 2 30 30 H 1.09001 * 109.47370 * 90.02289 * 1 2 3 31 31 H 1.09008 * 109.46604 * 210.01691 * 1 2 3 32 32 H 1.08996 * 109.47354 * 330.01758 * 1 2 3 33 33 H 0.97006 * 120.00475 * 359.71919 * 6 4 3 34 34 H 1.09001 * 109.45669 * 301.33925 * 9 7 6 35 35 H 1.08997 * 109.45858 * 61.30024 * 9 7 6 36 36 H 1.08998 * 109.49524 * 178.71059 * 10 9 7 37 37 H 1.09006 * 109.49654 * 58.65420 * 10 9 7 38 38 H 1.09000 * 109.59011 * 294.82966 * 11 10 9 39 39 H 1.09010 * 109.70247 * 174.47470 * 11 10 9 40 40 H 0.97006 * 119.99460 * 180.02562 * 16 15 13 41 41 H 1.08997 * 109.47390 * 300.70689 * 23 21 12 42 42 H 1.08998 * 109.47588 * 60.71484 * 23 21 12 43 43 H 1.09006 * 109.47247 * 180.70918 * 23 21 12 44 44 H 1.08996 * 109.47472 * 0.28581 * 27 26 2 45 45 H 1.08993 * 109.47601 * 59.99881 * 28 27 26 46 46 H 1.09001 * 109.46971 * 179.97438 * 28 27 26 47 47 H 1.09001 * 109.46720 * 299.99192 * 28 27 26 48 48 H 1.09001 * 109.47215 * 179.97438 * 29 27 26 49 49 H 1.08993 * 109.47377 * 299.99840 * 29 27 26 50 50 H 1.08997 * 109.47286 * 60.00388 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8736 2.5028 0.0005 5 8 0.6858 2.7628 -0.0044 6 7 2.7814 3.4988 0.0010 7 6 2.3373 4.8948 -0.0047 8 1 1.4270 4.9847 -0.5976 9 6 2.0588 5.3481 1.4304 10 6 1.5641 6.7963 1.4228 11 6 2.6503 7.7004 0.8317 12 7 3.0265 7.1844 -0.4916 13 6 3.0001 7.9995 -1.5917 14 1 2.8107 7.5812 -2.5691 15 6 3.2166 9.3633 -1.4503 16 7 3.7334 9.8356 -0.3357 17 14 2.7744 10.5284 -2.8419 18 1 1.3218 10.4239 -3.1323 19 1 3.1001 11.9214 -2.4437 20 1 3.5492 10.1661 -4.0559 21 6 3.4322 5.7775 -0.6120 22 1 4.3680 5.6197 -0.0757 23 6 3.6176 5.4217 -2.0884 24 7 3.5983 0.6791 0.0058 25 7 3.6299 -0.6082 0.0038 26 7 2.3105 -1.0825 -0.0037 27 6 1.8866 -2.4847 -0.0079 28 6 2.4350 -3.1796 -1.2559 29 6 2.4239 -3.1838 1.2425 30 1 -0.3634 -0.0004 -1.0277 31 1 -0.3633 -0.8899 0.5141 32 1 -0.3634 0.8901 0.5135 33 1 3.7291 3.2915 0.0051 34 1 1.2971 4.7060 1.8726 35 1 2.9752 5.2811 2.0166 36 1 1.3442 7.1109 2.4430 37 1 0.6608 6.8690 0.8170 38 1 3.5223 7.6996 1.4857 39 1 2.2687 8.7167 0.7326 40 1 3.8843 10.7887 -0.2369 41 1 2.6817 5.5866 -2.6222 42 1 4.3970 6.0506 -2.5187 43 1 3.9063 4.3742 -2.1763 44 1 0.7978 -2.5352 -0.0128 45 1 3.5237 -3.1293 -1.2510 46 1 2.1199 -4.2231 -1.2588 47 1 2.0522 -2.6816 -2.1468 48 1 2.1081 -4.2270 1.2397 49 1 3.5126 -3.1334 1.2474 50 1 2.0333 -2.6888 2.1316 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994141058.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:53 Heat of formation + Delta-G solvation = 46.847521 kcal Electronic energy + Delta-G solvation = -29868.340971 eV Core-core repulsion = 25932.044544 eV Total energy + Delta-G solvation = -3936.296427 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.33245 -40.87079 -39.13495 -37.35819 -35.91955 -34.26885 -33.96765 -33.41521 -32.09201 -30.82882 -28.84586 -28.27059 -27.77443 -26.85279 -25.05568 -24.64664 -23.12784 -22.30584 -21.53033 -21.09600 -20.81031 -18.74741 -18.21307 -17.50598 -17.24284 -17.21709 -16.64584 -15.82739 -15.77253 -15.57850 -15.38634 -15.23752 -15.05237 -14.82423 -14.52080 -14.28679 -14.16509 -14.00349 -13.96694 -13.33608 -13.26575 -13.20037 -13.18601 -12.95735 -12.78173 -12.70344 -12.53133 -12.52006 -12.40886 -12.37010 -12.00589 -11.92608 -11.82657 -11.74662 -11.60180 -11.20960 -11.13664 -10.98333 -10.50056 -10.26774 -9.91426 -8.63897 -7.83149 -5.29472 0.12873 0.63104 1.05777 1.48666 1.51103 1.57172 2.11660 2.25312 2.55635 3.16622 3.31563 3.32036 3.55158 3.64335 3.75317 3.81843 3.91911 3.98760 4.04857 4.13010 4.23996 4.37783 4.50248 4.56169 4.61439 4.63162 4.64215 4.65084 4.72352 4.76010 4.77923 4.87127 4.90719 4.92895 5.05730 5.12555 5.16151 5.18921 5.23280 5.25188 5.29717 5.43036 5.49482 5.58282 5.61786 5.72309 5.79497 6.43381 6.48201 6.92887 7.16698 7.19997 7.88137 8.40270 9.23704 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.025374 B = 0.002458 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.221928 B =11386.947131 C =11676.451398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.131 3.869 3 C -0.130 4.130 4 C 0.605 3.395 5 O -0.561 6.561 6 N -0.699 5.699 7 C 0.149 3.851 8 H 0.068 0.932 9 C -0.110 4.110 10 C -0.127 4.127 11 C 0.174 3.826 12 N -0.599 5.599 13 C -0.253 4.253 14 H 0.073 0.927 15 C -0.050 4.050 16 N -0.935 5.935 17 Si 0.963 3.037 18 H -0.280 1.280 19 H -0.295 1.295 20 H -0.276 1.276 21 C 0.164 3.836 22 H 0.027 0.973 23 C -0.127 4.127 24 N -0.226 5.226 25 N -0.084 5.084 26 N -0.345 5.345 27 C 0.131 3.869 28 C -0.159 4.159 29 C -0.160 4.160 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.094 0.906 33 H 0.410 0.590 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.000 1.000 39 H 0.058 0.942 40 H 0.249 0.751 41 H 0.046 0.954 42 H 0.048 0.952 43 H 0.066 0.934 44 H 0.142 0.858 45 H 0.056 0.944 46 H 0.113 0.887 47 H 0.057 0.943 48 H 0.113 0.887 49 H 0.056 0.944 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.980 -29.485 2.285 30.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.008 4.008 3 C -0.270 4.270 4 C 0.390 3.610 5 O -0.440 6.440 6 N -0.348 5.348 7 C 0.043 3.957 8 H 0.086 0.914 9 C -0.148 4.148 10 C -0.167 4.167 11 C 0.049 3.951 12 N -0.323 5.323 13 C -0.383 4.383 14 H 0.090 0.910 15 C -0.246 4.246 16 N -0.581 5.581 17 Si 0.792 3.208 18 H -0.206 1.206 19 H -0.222 1.222 20 H -0.202 1.202 21 C 0.057 3.943 22 H 0.044 0.956 23 C -0.184 4.184 24 N -0.099 5.099 25 N -0.064 5.064 26 N -0.132 5.132 27 C 0.032 3.968 28 C -0.217 4.217 29 C -0.217 4.217 30 H 0.122 0.878 31 H 0.129 0.871 32 H 0.112 0.888 33 H 0.245 0.755 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.019 0.981 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.085 0.915 44 H 0.160 0.840 45 H 0.075 0.925 46 H 0.132 0.868 47 H 0.076 0.924 48 H 0.131 0.869 49 H 0.075 0.925 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.263 -29.569 2.298 30.312 hybrid contribution -0.211 1.385 -0.498 1.487 sum -6.474 -28.185 1.800 28.975 Atomic orbital electron populations 1.20830 0.82509 1.06190 1.05655 1.22328 0.97414 0.85823 0.95253 1.21215 0.89685 0.95270 1.20805 1.16915 0.85334 0.83037 0.75727 1.90733 1.16636 1.84060 1.52534 1.45777 1.10296 1.05393 1.73331 1.21368 0.98397 0.79034 0.96868 0.91366 1.21697 1.00810 0.96292 0.96021 1.22002 0.99030 0.95063 1.00581 1.20675 0.93258 0.96580 0.84632 1.44272 1.77087 1.05693 1.05233 1.19430 1.40917 0.89113 0.88855 0.90952 1.25787 0.99757 0.99591 0.99425 1.70171 1.47206 1.12577 1.28122 0.85401 0.78209 0.77833 0.79364 1.20621 1.22161 1.20172 1.20683 0.93381 0.84604 0.95589 0.95567 1.21713 1.01249 1.00154 0.95325 1.74593 1.19672 1.04943 1.10651 1.81816 0.98145 1.02789 1.23619 1.50963 1.05136 1.08486 1.48637 1.22207 1.02450 0.73078 0.99055 1.22162 1.02009 1.02509 0.95019 1.22171 1.02079 1.02499 0.94995 0.87813 0.87083 0.88765 0.75452 0.92083 0.92176 0.90809 0.93205 0.98143 0.92317 0.94229 0.93522 0.93243 0.91478 0.84022 0.92485 0.86849 0.92371 0.86855 0.92484 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.29 9.40 71.24 0.67 -0.62 16 2 C 0.13 2.72 7.02 41.72 0.29 3.01 16 3 C -0.13 -3.61 6.99 40.82 0.29 -3.33 16 4 C 0.60 19.31 7.78 86.69 0.67 19.98 16 5 O -0.56 -19.81 14.38 -4.00 -0.06 -19.87 16 6 N -0.70 -22.52 4.57 -445.34 -2.04 -24.56 16 7 C 0.15 5.57 1.99 45.07 0.09 5.66 16 8 H 0.07 2.86 7.58 -2.39 -0.02 2.84 16 9 C -0.11 -3.97 5.46 30.62 0.17 -3.80 16 10 C -0.13 -5.05 6.08 30.67 0.19 -4.87 16 11 C 0.17 8.56 5.29 86.36 0.46 9.01 16 12 N -0.60 -30.22 2.99 -675.24 -2.02 -32.24 16 13 C -0.25 -13.82 8.61 84.03 0.72 -13.10 16 14 H 0.07 3.84 6.20 -2.91 -0.02 3.83 16 15 C -0.05 -2.83 4.96 84.86 0.42 -2.41 16 16 N -0.93 -55.46 11.14 21.65 0.24 -55.22 16 17 Si 0.96 45.39 29.58 68.60 2.03 47.42 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 C 0.16 6.89 3.03 44.97 0.14 7.03 16 22 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 23 C -0.13 -4.92 7.84 71.98 0.56 -4.36 16 24 N -0.23 -6.55 12.04 -49.99 -0.60 -7.15 16 25 N -0.08 -2.14 13.67 37.02 0.51 -1.63 16 26 N -0.35 -6.24 3.28 -313.39 -1.03 -7.27 16 27 C 0.13 1.09 3.68 45.00 0.17 1.25 16 28 C -0.16 -1.14 9.47 71.98 0.68 -0.46 16 29 C -0.16 -1.10 9.47 71.98 0.68 -0.42 16 30 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.11 0.64 7.20 -2.38 -0.02 0.62 16 32 H 0.09 1.78 6.43 -2.39 -0.02 1.77 16 33 H 0.41 12.34 8.29 -92.70 -0.77 11.57 16 34 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 36 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 38 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.06 3.25 6.06 -2.38 -0.01 3.23 16 40 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16 41 H 0.05 1.86 7.40 -2.39 -0.02 1.85 16 42 H 0.05 2.04 7.66 -2.39 -0.02 2.02 16 43 H 0.07 2.21 7.79 -2.38 -0.02 2.19 16 44 H 0.14 0.29 6.79 -2.39 -0.02 0.27 16 45 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 47 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 48 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 49 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -71.42 395.59 3.40 -68.01 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 0.18 Total: 19.92 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 6.20 Total: 12.59 kcal Atomic # 7 Polarization: -123.13 SS G_CDS: -4.94 Total: -128.07 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.06 Total: -19.87 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -71.42 3.40 -68.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994141058.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.859 kcal (2) G-P(sol) polarization free energy of solvation -71.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds