Wall clock time and date at job start Tue Mar 31 2020 20:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47202 * 2 1 4 4 C 1.36604 * 126.58315 * 270.15576 * 3 2 1 5 5 C 1.47522 * 125.76760 * 0.02562 * 4 3 2 6 6 O 1.21593 * 120.00219 * 0.23552 * 5 4 3 7 7 N 1.34777 * 120.00061 * 180.24339 * 5 4 3 8 8 C 1.47021 * 125.64492 * 0.02562 * 7 5 4 9 9 C 1.54331 * 107.26739 * 181.02525 * 8 7 5 10 10 H 1.09005 * 110.71787 * 140.55250 * 9 8 7 11 11 N 1.46500 * 110.71714 * 263.64884 * 9 8 7 12 12 C 1.36932 * 119.99905 * 273.54683 * 11 9 8 13 13 H 1.08000 * 120.00287 * 359.97438 * 12 11 9 14 14 C 1.38816 * 120.00062 * 180.02562 * 12 11 9 15 15 N 1.31618 * 120.00410 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99529 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46722 * 90.01020 * 16 14 12 18 18 H 1.48504 * 109.46912 * 209.99947 * 16 14 12 19 19 H 1.48493 * 109.47570 * 330.00471 * 16 14 12 20 20 C 1.55155 * 102.94070 * 22.19230 * 9 8 7 21 21 C 1.53003 * 111.00488 * 82.57532 * 20 9 8 22 22 C 1.53007 * 110.99828 * 206.38588 * 20 9 8 23 23 C 1.47423 * 125.64918 * 179.71160 * 7 5 4 24 24 N 1.34396 * 108.46072 * 180.23319 * 4 3 2 25 25 N 1.28768 * 109.52409 * 359.77493 * 24 4 3 26 26 N 1.34812 * 126.58255 * 90.00140 * 3 2 1 27 27 C 1.46500 * 126.59281 * 0.03440 * 26 3 2 28 28 C 1.52997 * 109.47473 * 269.71465 * 27 26 3 29 29 H 1.08994 * 109.47156 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46991 * 300.00032 * 1 2 3 31 31 H 1.08995 * 109.47050 * 59.99655 * 1 2 3 32 32 H 1.09008 * 109.47187 * 240.00196 * 2 1 3 33 33 H 1.08999 * 109.47340 * 119.99951 * 2 1 3 34 34 H 1.09003 * 109.88363 * 300.43495 * 8 7 5 35 35 H 1.08996 * 109.88456 * 61.45325 * 8 7 5 36 36 H 0.96996 * 119.99941 * 93.55243 * 11 9 8 37 37 H 0.96993 * 120.00007 * 179.97438 * 15 14 12 38 38 H 1.08996 * 109.46877 * 59.99712 * 21 20 9 39 39 H 1.08998 * 109.46820 * 179.97438 * 21 20 9 40 40 H 1.08997 * 109.46805 * 299.99485 * 21 20 9 41 41 H 1.08992 * 109.47509 * 60.00017 * 22 20 9 42 42 H 1.09006 * 109.46505 * 180.02562 * 22 20 9 43 43 H 1.09004 * 109.46875 * 299.99684 * 22 20 9 44 44 H 1.08994 * 110.36824 * 274.74707 * 23 7 5 45 45 H 1.09006 * 110.36300 * 37.07514 * 23 7 5 46 46 H 1.09002 * 109.47129 * 149.71208 * 27 26 3 47 47 H 1.08998 * 109.46845 * 29.72015 * 27 26 3 48 48 H 1.09002 * 109.47153 * 59.99757 * 28 27 26 49 49 H 1.09001 * 109.46832 * 299.99948 * 28 27 26 50 50 H 1.09004 * 109.47261 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3009 2.1894 -1.0969 5 6 2.1477 1.7691 -2.5027 6 8 1.7465 0.6511 -2.7628 7 7 2.4525 2.6244 -3.4988 8 6 2.9461 3.9986 -3.3271 9 6 3.1304 4.5986 -4.7370 10 1 2.8140 5.6415 -4.7567 11 7 4.5225 4.4728 -5.1758 12 6 5.4367 5.4344 -4.8371 13 1 5.1314 6.2857 -4.2468 14 6 6.7556 5.3156 -5.2533 15 7 7.6344 6.2395 -4.9273 16 14 7.2835 3.8434 -6.2749 17 1 7.1172 4.1565 -7.7170 18 1 8.7090 3.5335 -5.9969 19 1 6.4441 2.6701 -5.9231 20 6 2.1938 3.7242 -5.6119 21 6 0.7477 4.2169 -5.5288 22 6 2.6753 3.6882 -7.0638 23 6 2.3525 2.3346 -4.9408 24 7 2.7326 3.3915 -0.6789 25 7 2.7450 3.4205 0.6084 26 7 2.3002 2.1783 1.0825 27 6 2.1595 1.7782 2.4848 28 6 0.7527 2.1256 2.9757 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8900 34 1 2.2192 4.5862 -2.7664 35 1 3.8996 3.9868 -2.7992 36 1 4.7966 3.7085 -5.7063 37 1 8.5561 6.1562 -5.2178 38 1 0.6941 5.2470 -5.8811 39 1 0.1128 3.5867 -6.1516 40 1 0.4062 4.1682 -4.4949 41 1 3.6811 3.2701 -7.1029 42 1 2.0007 3.0689 -7.6550 43 1 2.6867 4.7005 -7.4679 44 1 3.2589 1.8420 -5.2925 45 1 1.4794 1.7142 -5.1433 46 1 2.8962 2.3074 3.0893 47 1 2.3206 0.7039 2.5740 48 1 0.0160 1.5964 2.3713 49 1 0.5917 3.2000 2.8865 50 1 0.6479 1.8275 4.0190 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996292354.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:40 Heat of formation + Delta-G solvation = 74.154993 kcal Electronic energy + Delta-G solvation = -30657.320261 eV Core-core repulsion = 26722.207974 eV Total energy + Delta-G solvation = -3935.112287 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.28784 -39.83968 -37.86602 -35.97725 -34.10215 -33.83654 -33.18054 -31.00810 -30.77191 -29.92166 -28.16147 -26.85775 -26.50424 -24.67900 -24.23273 -23.68325 -22.75850 -21.22800 -20.43809 -19.40358 -18.95734 -17.51721 -17.37766 -16.40391 -15.92037 -15.67161 -15.30668 -14.97055 -14.78927 -14.57112 -14.32570 -14.14082 -13.76381 -13.64026 -13.23803 -13.01525 -12.85039 -12.74842 -12.62244 -12.49951 -12.40211 -12.17121 -12.04492 -11.97997 -11.66898 -11.59270 -11.51661 -11.30869 -11.16242 -10.94551 -10.93375 -10.56141 -10.44092 -10.28192 -10.21977 -9.88268 -9.76923 -9.52860 -9.12545 -8.93456 -8.20034 -7.27329 -5.75178 -3.11136 1.11525 1.86898 1.95120 3.26104 3.38490 3.41141 3.46631 3.48703 4.07644 4.11324 4.43226 4.44491 4.55972 4.60369 4.68223 4.78953 4.90494 4.98647 5.04677 5.05858 5.13444 5.19845 5.22480 5.38214 5.46824 5.55095 5.57060 5.60476 5.65383 5.71187 5.81074 5.85119 5.90401 5.94857 5.99120 6.05736 6.15801 6.18246 6.26384 6.31793 6.36339 6.42024 6.61638 6.65350 6.76722 6.89370 7.82968 8.00411 8.02924 8.40107 8.43796 9.21385 9.93605 10.12510 11.42964 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013124 B = 0.003696 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.961142 B = 7573.849022 C = 8587.449157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.063 4.063 3 C 0.121 3.879 4 C -0.095 4.095 5 C 0.614 3.386 6 O -0.553 6.553 7 N -0.591 5.591 8 C 0.083 3.917 9 C 0.182 3.818 10 H 0.079 0.921 11 N -0.737 5.737 12 C -0.243 4.243 13 H 0.093 0.907 14 C 0.009 3.991 15 N -0.931 5.931 16 Si 0.878 3.122 17 H -0.283 1.283 18 H -0.291 1.291 19 H -0.278 1.278 20 C -0.092 4.092 21 C -0.128 4.128 22 C -0.127 4.127 23 C 0.121 3.879 24 N -0.188 5.188 25 N -0.070 5.070 26 N -0.363 5.363 27 C 0.117 3.883 28 C -0.173 4.173 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.362 0.638 37 H 0.259 0.741 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.049 0.951 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.106 0.894 47 H 0.099 0.901 48 H 0.066 0.934 49 H 0.069 0.931 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.553 -12.409 11.836 24.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.102 4.102 3 C -0.017 4.017 4 C -0.235 4.235 5 C 0.401 3.599 6 O -0.432 6.432 7 N -0.322 5.322 8 C -0.042 4.042 9 C 0.071 3.929 10 H 0.096 0.904 11 N -0.380 5.380 12 C -0.373 4.373 13 H 0.111 0.889 14 C -0.187 4.187 15 N -0.579 5.579 16 Si 0.708 3.292 17 H -0.209 1.209 18 H -0.218 1.218 19 H -0.204 1.204 20 C -0.094 4.094 21 C -0.186 4.186 22 C -0.184 4.184 23 C -0.001 4.001 24 N -0.061 5.061 25 N -0.049 5.049 26 N -0.149 5.149 27 C -0.005 4.005 28 C -0.230 4.230 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.134 0.866 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.197 0.803 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.124 0.876 47 H 0.117 0.883 48 H 0.085 0.915 49 H 0.088 0.912 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.109 -11.393 12.276 23.942 hybrid contribution 0.467 -1.865 -0.568 2.005 sum -16.643 -13.258 11.709 24.287 Atomic orbital electron populations 1.21712 0.93250 1.02650 1.02341 1.20437 0.97176 0.87457 1.05132 1.21855 0.97328 0.96080 0.86474 1.21140 1.14738 0.92373 0.95200 1.16325 0.77776 0.83737 0.82058 1.90714 1.49231 1.19734 1.83528 1.48181 1.63063 1.15182 1.05732 1.23252 0.99935 0.80183 1.00858 1.21256 0.84998 0.97201 0.89448 0.90361 1.42799 1.04638 1.26586 1.63945 1.19070 0.88870 1.01067 1.28248 0.88899 1.24628 0.95945 0.97624 1.00514 1.69691 1.03120 1.34705 1.50368 0.86658 0.77967 0.83677 0.80893 1.20936 1.21769 1.20394 1.22092 0.96233 0.94897 0.96159 1.21657 0.94173 1.01093 1.01662 1.21596 1.00738 1.02451 0.93650 1.22343 1.01517 0.96881 0.79397 1.74838 1.09792 1.17869 1.03579 1.82053 1.20055 0.98978 1.03799 1.50502 1.45550 1.11539 1.07283 1.21942 1.00127 1.01880 0.76510 1.22249 0.94955 1.03593 1.02251 0.91265 0.93042 0.91525 0.86615 0.90589 0.91759 0.89650 0.80331 0.93075 0.92071 0.92759 0.92664 0.92300 0.93192 0.91570 0.91500 0.90763 0.87568 0.88258 0.91506 0.91164 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.89 37.16 0.37 -0.82 16 2 C -0.06 -0.61 5.62 -27.89 -0.16 -0.76 16 3 C 0.12 1.56 6.27 -81.87 -0.51 1.05 16 4 C -0.10 -1.57 6.85 -83.55 -0.57 -2.14 16 5 C 0.61 10.84 7.85 -12.48 -0.10 10.74 16 6 O -0.55 -9.97 14.98 5.28 0.08 -9.89 16 7 N -0.59 -10.45 3.31 -171.61 -0.57 -11.02 16 8 C 0.08 1.56 4.94 -3.06 -0.02 1.54 16 9 C 0.18 3.44 2.85 -66.09 -0.19 3.25 16 10 H 0.08 1.49 8.02 -51.93 -0.42 1.07 16 11 N -0.74 -16.95 4.42 -51.65 -0.23 -17.18 16 12 C -0.24 -6.71 10.46 -15.06 -0.16 -6.87 16 13 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 14 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 15 N -0.93 -29.21 13.97 55.49 0.78 -28.43 16 16 Si 0.88 22.18 27.74 -169.99 -4.71 17.46 16 17 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 19 H -0.28 -6.70 6.52 56.52 0.37 -6.34 16 20 C -0.09 -1.42 0.84 -152.24 -0.13 -1.54 16 21 C -0.13 -1.65 8.59 37.16 0.32 -1.33 16 22 C -0.13 -1.88 8.22 37.16 0.31 -1.57 16 23 C 0.12 1.96 5.83 -2.41 -0.01 1.95 16 24 N -0.19 -3.34 9.77 32.85 0.32 -3.01 16 25 N -0.07 -1.11 13.79 60.35 0.83 -0.28 16 26 N -0.36 -4.33 3.63 -56.85 -0.21 -4.54 16 27 C 0.12 0.79 7.02 -4.04 -0.03 0.76 16 28 C -0.17 -0.94 10.24 37.16 0.38 -0.56 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.36 6.16 -51.93 -0.32 0.04 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.12 1.35 6.44 -51.92 -0.33 1.01 16 33 H 0.08 0.51 7.18 -51.93 -0.37 0.14 16 34 H 0.06 1.15 7.62 -51.93 -0.40 0.76 16 35 H 0.09 1.89 7.63 -51.93 -0.40 1.49 16 36 H 0.36 8.31 3.98 -40.82 -0.16 8.14 16 37 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.74 7.91 -51.93 -0.41 0.33 16 41 H 0.06 0.97 6.39 -51.93 -0.33 0.64 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.07 1.16 7.99 -51.93 -0.41 0.74 16 45 H 0.07 1.12 7.95 -51.93 -0.41 0.70 16 46 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.10 0.43 7.15 -51.93 -0.37 0.06 16 48 H 0.07 0.38 6.16 -51.93 -0.32 0.06 16 49 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 LS Contribution 393.53 15.07 5.93 5.93 Total: -1.00 -34.09 393.53 -6.43 -40.52 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -8.06 Total: 6.59 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -0.59 Total: 3.86 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: 0.93 Total: -64.47 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.08 Total: -9.89 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.46 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.09 -6.43 -40.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996292354.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.673 kcal (2) G-P(sol) polarization free energy of solvation -34.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds