Wall clock time and date at job start Tue Mar 31 2020 20:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47202 * 2 1 4 4 C 1.36604 * 126.58315 * 270.15576 * 3 2 1 5 5 C 1.47522 * 125.76760 * 0.02562 * 4 3 2 6 6 O 1.21593 * 120.00219 * 0.23552 * 5 4 3 7 7 N 1.34777 * 120.00061 * 180.24339 * 5 4 3 8 8 C 1.47021 * 125.64492 * 0.02562 * 7 5 4 9 9 C 1.54331 * 107.26739 * 181.02525 * 8 7 5 10 10 H 1.09005 * 110.71787 * 140.55250 * 9 8 7 11 11 N 1.46500 * 110.71714 * 263.64884 * 9 8 7 12 12 C 1.36932 * 119.99905 * 273.54683 * 11 9 8 13 13 H 1.08000 * 120.00287 * 359.97438 * 12 11 9 14 14 C 1.38816 * 120.00062 * 180.02562 * 12 11 9 15 15 N 1.31618 * 120.00410 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99529 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46722 * 90.01020 * 16 14 12 18 18 H 1.48504 * 109.46912 * 209.99947 * 16 14 12 19 19 H 1.48493 * 109.47570 * 330.00471 * 16 14 12 20 20 C 1.55155 * 102.94070 * 22.19230 * 9 8 7 21 21 C 1.53003 * 111.00488 * 82.57532 * 20 9 8 22 22 C 1.53007 * 110.99828 * 206.38588 * 20 9 8 23 23 C 1.47423 * 125.64918 * 179.71160 * 7 5 4 24 24 N 1.34396 * 108.46072 * 180.23319 * 4 3 2 25 25 N 1.28768 * 109.52409 * 359.77493 * 24 4 3 26 26 N 1.34812 * 126.58255 * 90.00140 * 3 2 1 27 27 C 1.46500 * 126.59281 * 0.03440 * 26 3 2 28 28 C 1.52997 * 109.47473 * 269.71465 * 27 26 3 29 29 H 1.08994 * 109.47156 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46991 * 300.00032 * 1 2 3 31 31 H 1.08995 * 109.47050 * 59.99655 * 1 2 3 32 32 H 1.09008 * 109.47187 * 240.00196 * 2 1 3 33 33 H 1.08999 * 109.47340 * 119.99951 * 2 1 3 34 34 H 1.09003 * 109.88363 * 300.43495 * 8 7 5 35 35 H 1.08996 * 109.88456 * 61.45325 * 8 7 5 36 36 H 0.96996 * 119.99941 * 93.55243 * 11 9 8 37 37 H 0.96993 * 120.00007 * 179.97438 * 15 14 12 38 38 H 1.08996 * 109.46877 * 59.99712 * 21 20 9 39 39 H 1.08998 * 109.46820 * 179.97438 * 21 20 9 40 40 H 1.08997 * 109.46805 * 299.99485 * 21 20 9 41 41 H 1.08992 * 109.47509 * 60.00017 * 22 20 9 42 42 H 1.09006 * 109.46505 * 180.02562 * 22 20 9 43 43 H 1.09004 * 109.46875 * 299.99684 * 22 20 9 44 44 H 1.08994 * 110.36824 * 274.74707 * 23 7 5 45 45 H 1.09006 * 110.36300 * 37.07514 * 23 7 5 46 46 H 1.09002 * 109.47129 * 149.71208 * 27 26 3 47 47 H 1.08998 * 109.46845 * 29.72015 * 27 26 3 48 48 H 1.09002 * 109.47153 * 59.99757 * 28 27 26 49 49 H 1.09001 * 109.46832 * 299.99948 * 28 27 26 50 50 H 1.09004 * 109.47261 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3009 2.1894 -1.0969 5 6 2.1477 1.7691 -2.5027 6 8 1.7465 0.6511 -2.7628 7 7 2.4525 2.6244 -3.4988 8 6 2.9461 3.9986 -3.3271 9 6 3.1304 4.5986 -4.7370 10 1 2.8140 5.6415 -4.7567 11 7 4.5225 4.4728 -5.1758 12 6 5.4367 5.4344 -4.8371 13 1 5.1314 6.2857 -4.2468 14 6 6.7556 5.3156 -5.2533 15 7 7.6344 6.2395 -4.9273 16 14 7.2835 3.8434 -6.2749 17 1 7.1172 4.1565 -7.7170 18 1 8.7090 3.5335 -5.9969 19 1 6.4441 2.6701 -5.9231 20 6 2.1938 3.7242 -5.6119 21 6 0.7477 4.2169 -5.5288 22 6 2.6753 3.6882 -7.0638 23 6 2.3525 2.3346 -4.9408 24 7 2.7326 3.3915 -0.6789 25 7 2.7450 3.4205 0.6084 26 7 2.3002 2.1783 1.0825 27 6 2.1595 1.7782 2.4848 28 6 0.7527 2.1256 2.9757 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8900 34 1 2.2192 4.5862 -2.7664 35 1 3.8996 3.9868 -2.7992 36 1 4.7966 3.7085 -5.7063 37 1 8.5561 6.1562 -5.2178 38 1 0.6941 5.2470 -5.8811 39 1 0.1128 3.5867 -6.1516 40 1 0.4062 4.1682 -4.4949 41 1 3.6811 3.2701 -7.1029 42 1 2.0007 3.0689 -7.6550 43 1 2.6867 4.7005 -7.4679 44 1 3.2589 1.8420 -5.2925 45 1 1.4794 1.7142 -5.1433 46 1 2.8962 2.3074 3.0893 47 1 2.3206 0.7039 2.5740 48 1 0.0160 1.5964 2.3713 49 1 0.5917 3.2000 2.8865 50 1 0.6479 1.8275 4.0190 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996292354.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:39 Heat of formation + Delta-G solvation = 50.838569 kcal Electronic energy + Delta-G solvation = -30658.331337 eV Core-core repulsion = 26722.207974 eV Total energy + Delta-G solvation = -3936.123363 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.38357 -41.23130 -39.25957 -36.85962 -35.83493 -34.76246 -34.58972 -33.03816 -31.55057 -30.97177 -29.74619 -28.10868 -27.70055 -25.62255 -25.47923 -24.91838 -24.04776 -22.79590 -21.32298 -20.71146 -20.48659 -19.38202 -18.48558 -17.56005 -17.27574 -16.82407 -16.63191 -16.26823 -16.09813 -15.80794 -15.54776 -15.23601 -14.91573 -14.76918 -14.56418 -14.44916 -13.95961 -13.92975 -13.74069 -13.62089 -13.48989 -13.34867 -13.15460 -13.13343 -12.90543 -12.80544 -12.75944 -12.63538 -12.32451 -12.25547 -11.99456 -11.94317 -11.91238 -11.79176 -11.60555 -11.32184 -11.23171 -11.11246 -10.95001 -10.28052 -9.64162 -9.31545 -8.01148 -5.34102 0.08788 0.59738 1.08446 1.34853 1.37882 1.43905 1.94604 2.17575 2.47253 3.09010 3.25016 3.28141 3.46180 3.50670 3.55139 3.69473 3.80570 3.94064 3.98113 4.07282 4.21507 4.25852 4.28805 4.41122 4.45690 4.48014 4.57161 4.59024 4.66589 4.74092 4.76607 4.85978 4.88692 4.95721 4.98090 5.00315 5.06564 5.09239 5.10211 5.19244 5.27340 5.30832 5.37061 5.38850 5.52097 5.53687 5.79934 6.22848 6.42107 6.81831 7.07276 7.09221 7.83056 8.02196 9.20471 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013124 B = 0.003696 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.961142 B = 7573.849022 C = 8587.449157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.060 4.060 3 C 0.137 3.863 4 C -0.131 4.131 5 C 0.611 3.389 6 O -0.559 6.559 7 N -0.596 5.596 8 C 0.104 3.896 9 C 0.172 3.828 10 H 0.075 0.925 11 N -0.737 5.737 12 C -0.223 4.223 13 H 0.061 0.939 14 C -0.058 4.058 15 N -0.982 5.982 16 Si 0.944 3.056 17 H -0.270 1.270 18 H -0.299 1.299 19 H -0.261 1.261 20 C -0.078 4.078 21 C -0.122 4.122 22 C -0.125 4.125 23 C 0.119 3.881 24 N -0.224 5.224 25 N -0.098 5.098 26 N -0.347 5.347 27 C 0.101 3.899 28 C -0.167 4.167 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.038 0.962 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.068 0.932 35 H 0.046 0.954 36 H 0.366 0.634 37 H 0.256 0.744 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.047 0.953 41 H 0.040 0.960 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.092 0.908 46 H 0.114 0.886 47 H 0.135 0.865 48 H 0.067 0.933 49 H 0.048 0.952 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.930 -15.430 12.371 28.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.100 4.100 3 C -0.003 4.003 4 C -0.271 4.271 5 C 0.399 3.601 6 O -0.439 6.439 7 N -0.327 5.327 8 C -0.022 4.022 9 C 0.063 3.937 10 H 0.093 0.907 11 N -0.380 5.380 12 C -0.354 4.354 13 H 0.079 0.921 14 C -0.250 4.250 15 N -0.633 5.633 16 Si 0.772 3.228 17 H -0.196 1.196 18 H -0.226 1.226 19 H -0.187 1.187 20 C -0.079 4.079 21 C -0.180 4.180 22 C -0.183 4.183 23 C -0.003 4.003 24 N -0.096 5.096 25 N -0.077 5.077 26 N -0.132 5.132 27 C -0.018 4.018 28 C -0.224 4.224 29 H 0.110 0.890 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.115 0.885 33 H 0.134 0.866 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.200 0.800 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.101 0.899 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.110 0.890 46 H 0.132 0.868 47 H 0.153 0.847 48 H 0.086 0.914 49 H 0.068 0.932 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -19.549 -14.430 12.838 27.481 hybrid contribution 1.099 -0.949 -0.535 1.548 sum -18.450 -15.379 12.302 26.987 Atomic orbital electron populations 1.21696 0.91955 1.03972 1.01814 1.20601 0.98077 0.85123 1.06157 1.22338 0.95362 0.97003 0.85638 1.21291 1.16995 0.93143 0.95666 1.16553 0.77350 0.83595 0.82593 1.90692 1.49574 1.19737 1.83857 1.48225 1.63301 1.14636 1.06557 1.22801 0.98132 0.81268 0.99997 1.21473 0.83738 0.98018 0.90505 0.90698 1.42731 1.05660 1.25604 1.63977 1.19016 0.89677 1.00600 1.26086 0.92126 1.25365 0.96108 1.00776 1.02727 1.69868 1.03395 1.37256 1.52759 0.85583 0.76985 0.80589 0.79674 1.19561 1.22647 1.18652 1.22063 0.96822 0.93220 0.95811 1.21631 0.92370 1.02071 1.01906 1.21602 1.00498 1.02858 0.93354 1.22442 1.01738 0.97493 0.78586 1.74799 1.11035 1.19143 1.04610 1.81924 1.21313 1.01223 1.03280 1.50868 1.43410 1.10028 1.08937 1.22563 1.01392 1.04139 0.73689 1.22241 0.93787 1.02280 1.04126 0.88990 0.91375 0.94277 0.88479 0.86593 0.91411 0.93583 0.79971 0.93466 0.91261 0.90181 0.93359 0.94124 0.89876 0.91864 0.92664 0.88960 0.86757 0.84700 0.91361 0.93250 0.86692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.89 71.98 0.71 -1.19 16 2 C -0.06 -1.01 5.62 29.85 0.17 -0.84 16 3 C 0.14 3.39 6.27 41.72 0.26 3.65 16 4 C -0.13 -4.38 6.85 40.82 0.28 -4.11 16 5 C 0.61 21.71 7.85 86.69 0.68 22.39 16 6 O -0.56 -19.86 14.98 -4.01 -0.06 -19.92 16 7 N -0.60 -21.24 3.31 -815.11 -2.70 -23.94 16 8 C 0.10 4.04 4.94 86.73 0.43 4.47 16 9 C 0.17 6.60 2.85 46.18 0.13 6.73 16 10 H 0.08 2.92 8.02 -2.38 -0.02 2.90 16 11 N -0.74 -34.40 4.42 -317.31 -1.40 -35.81 16 12 C -0.22 -12.76 10.46 84.04 0.88 -11.88 16 13 H 0.06 3.80 8.06 -2.91 -0.02 3.78 16 14 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 15 N -0.98 -63.95 13.97 21.65 0.30 -63.65 16 16 Si 0.94 46.59 27.74 68.60 1.90 48.49 16 17 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 19 H -0.26 -12.02 6.52 99.48 0.65 -11.37 16 20 C -0.08 -2.28 0.84 -50.71 -0.04 -2.32 16 21 C -0.12 -2.86 8.59 71.98 0.62 -2.24 16 22 C -0.13 -3.44 8.22 71.98 0.59 -2.85 16 23 C 0.12 3.73 5.83 86.93 0.51 4.24 16 24 N -0.22 -8.28 9.77 -49.99 -0.49 -8.77 16 25 N -0.10 -3.20 13.79 37.02 0.51 -2.69 16 26 N -0.35 -7.86 3.63 -333.78 -1.21 -9.08 16 27 C 0.10 1.08 7.02 86.38 0.61 1.68 16 28 C -0.17 -1.33 10.24 71.98 0.74 -0.59 16 29 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.72 6.16 -2.39 -0.01 0.70 16 31 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.10 2.09 6.44 -2.38 -0.02 2.07 16 33 H 0.12 1.02 7.18 -2.39 -0.02 1.01 16 34 H 0.07 2.56 7.62 -2.39 -0.02 2.54 16 35 H 0.05 2.16 7.63 -2.39 -0.02 2.14 16 36 H 0.37 16.65 3.98 -92.71 -0.37 16.28 16 37 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 38 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.05 1.21 7.91 -2.39 -0.02 1.19 16 41 H 0.04 1.26 6.39 -2.39 -0.02 1.24 16 42 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 43 H 0.06 1.77 8.14 -2.38 -0.02 1.76 16 44 H 0.06 1.86 7.99 -2.39 -0.02 1.84 16 45 H 0.09 2.57 7.95 -2.38 -0.02 2.55 16 46 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.14 0.53 7.15 -2.39 -0.02 0.52 16 48 H 0.07 0.55 6.16 -2.39 -0.01 0.53 16 49 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 50 H 0.11 0.24 8.14 -2.38 -0.02 0.22 16 Total: -1.00 -78.93 393.53 4.40 -74.54 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.52 Total: 26.71 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 7.02 Total: 14.12 kcal Atomic # 7 Polarization: -138.94 SS G_CDS: -4.99 Total: -143.93 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.06 Total: -19.92 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 1.90 Total: 48.49 kcal Total: -78.93 4.40 -74.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996292354.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.375 kcal (2) G-P(sol) polarization free energy of solvation -78.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds