Wall clock time and date at job start Tue Mar 31 2020 18:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.36595 * 126.57799 * 2 1 4 4 C 1.47521 * 125.77241 * 0.03984 * 3 2 1 5 5 O 1.21596 * 120.00175 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99933 * 180.02562 * 4 3 2 7 7 C 1.47022 * 125.64363 * 0.02562 * 6 4 3 8 8 C 1.54331 * 107.26762 * 181.02499 * 7 6 4 9 9 H 1.08989 * 110.72092 * 140.55483 * 8 7 6 10 10 N 1.46498 * 110.71892 * 263.83057 * 8 7 6 11 11 C 1.36936 * 120.00213 * 273.54419 * 10 8 7 12 12 H 1.08005 * 119.99608 * 0.02562 * 11 10 8 13 13 C 1.38806 * 120.00434 * 180.02562 * 11 10 8 14 14 N 1.31624 * 119.99760 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00405 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47245 * 89.99549 * 15 13 11 17 17 H 1.48494 * 109.47441 * 209.99606 * 15 13 11 18 18 H 1.48502 * 109.46751 * 330.00011 * 15 13 11 19 19 C 1.55157 * 102.93924 * 22.19246 * 8 7 6 20 20 C 1.52999 * 111.00460 * 82.57717 * 19 8 7 21 21 C 1.53003 * 111.00019 * 206.38528 * 19 8 7 22 22 C 1.47421 * 125.64965 * 179.71107 * 6 4 3 23 23 N 1.34398 * 108.45462 * 180.02562 * 3 2 1 24 24 N 1.28768 * 109.52592 * 359.74793 * 23 3 2 25 25 N 1.34809 * 126.57902 * 180.02562 * 2 1 3 26 26 C 1.46504 * 126.59161 * 359.93177 * 25 2 1 27 27 C 1.53006 * 109.46883 * 239.99478 * 26 25 2 28 28 C 1.52999 * 109.47050 * 120.00276 * 26 25 2 29 29 H 1.08995 * 109.46778 * 269.95963 * 1 2 3 30 30 H 1.08999 * 109.47028 * 29.95480 * 1 2 3 31 31 H 1.08997 * 109.47207 * 149.95590 * 1 2 3 32 32 H 1.08995 * 109.88514 * 300.43897 * 7 6 4 33 33 H 1.08999 * 109.88703 * 61.45650 * 7 6 4 34 34 H 0.97000 * 120.00320 * 93.54394 * 10 8 7 35 35 H 0.97002 * 119.99827 * 180.02562 * 14 13 11 36 36 H 1.08997 * 109.47394 * 59.99172 * 20 19 8 37 37 H 1.09004 * 109.47351 * 179.97438 * 20 19 8 38 38 H 1.09003 * 109.46435 * 299.99379 * 20 19 8 39 39 H 1.08999 * 109.47258 * 60.00521 * 21 19 8 40 40 H 1.09003 * 109.46831 * 180.02562 * 21 19 8 41 41 H 1.08996 * 109.47435 * 300.00050 * 21 19 8 42 42 H 1.08999 * 110.36918 * 274.75064 * 22 6 4 43 43 H 1.09009 * 110.36414 * 37.07111 * 22 6 4 44 44 H 1.08993 * 109.47378 * 359.97438 * 26 25 2 45 45 H 1.09001 * 109.46998 * 59.99945 * 27 26 25 46 46 H 1.09000 * 109.47050 * 180.02562 * 27 26 25 47 47 H 1.09001 * 109.46801 * 300.00349 * 27 26 25 48 48 H 1.09000 * 109.47160 * 179.97438 * 28 26 25 49 49 H 1.09002 * 109.46719 * 299.99449 * 28 26 25 50 50 H 1.08993 * 109.47839 * 59.99291 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 0.0008 5 8 0.6860 2.7628 0.0011 6 7 2.7818 3.4988 0.0002 7 6 4.2419 3.3271 -0.0018 8 6 4.8691 4.7370 0.0246 9 1 5.7445 4.7575 0.6734 10 7 5.2153 5.1756 -1.3297 11 6 6.4269 4.8369 -1.8703 12 1 7.1272 4.2460 -1.2985 13 6 6.7552 5.2529 -3.1532 14 7 5.9016 5.9727 -3.8503 15 14 8.4078 4.7903 -3.8911 16 1 8.2842 3.4967 -4.6099 17 1 8.8382 5.8461 -4.8425 18 1 9.4146 4.6601 -2.8073 19 6 3.7304 5.6127 0.6110 20 6 3.7078 5.5318 2.1387 21 6 3.8587 7.0640 0.1435 22 6 2.4753 4.9408 -0.0051 23 7 3.5984 0.6789 -0.0006 24 7 3.6299 -0.6084 0.0044 25 7 2.3105 -1.0826 -0.0005 26 6 1.8863 -2.4849 0.0003 27 6 2.4304 -3.1815 1.2492 28 6 2.4279 -3.1822 -1.2492 29 1 -0.3633 -0.0007 1.0276 30 1 -0.3633 0.8904 -0.5131 31 1 -0.3633 -0.8896 -0.5145 32 1 4.5507 2.7675 0.8812 33 1 4.5518 2.7979 -0.9029 34 1 4.5863 5.7060 -1.8434 35 1 6.1309 6.2631 -4.7470 36 1 4.6597 5.8846 2.5354 37 1 2.9007 6.1552 2.5237 38 1 3.5469 4.4983 2.4453 39 1 3.8033 7.1015 -0.9444 40 1 3.0485 7.6558 0.5695 41 1 4.8157 7.4686 0.4728 42 1 2.3165 5.2911 -1.0250 43 1 1.5972 5.1442 0.6079 44 1 0.7975 -2.5351 0.0018 45 1 2.0446 -2.6847 2.1394 46 1 2.1152 -4.2249 1.2496 47 1 3.5192 -3.1312 1.2480 48 1 2.1127 -4.2256 -1.2485 49 1 2.0403 -2.6859 -2.1390 50 1 3.5166 -3.1319 -1.2504 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996469058.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:01 Heat of formation + Delta-G solvation = 70.776284 kcal Electronic energy + Delta-G solvation = -30396.370396 eV Core-core repulsion = 26461.111597 eV Total energy + Delta-G solvation = -3935.258798 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.22648 -39.71096 -37.74418 -36.56943 -33.89645 -33.21785 -32.90426 -30.94133 -30.64869 -28.12585 -27.79729 -27.77031 -26.60961 -26.01199 -24.09491 -23.72866 -22.54760 -21.24842 -20.32081 -19.09648 -18.62776 -17.31838 -17.07277 -16.25653 -16.06099 -15.64179 -15.17949 -14.72672 -14.63482 -14.20555 -14.00855 -13.80474 -13.73398 -13.33309 -13.30588 -13.15747 -12.92105 -12.70427 -12.62948 -12.47432 -12.34145 -12.17410 -11.94299 -11.84083 -11.72701 -11.53967 -11.49351 -11.37462 -10.98190 -10.86328 -10.83516 -10.48007 -10.31193 -10.18241 -10.15322 -9.80206 -9.68166 -9.54137 -9.05259 -8.88981 -8.08276 -6.94972 -5.74435 -3.03138 1.16877 1.93332 1.96063 3.36324 3.46893 3.52534 3.53372 3.57311 4.01016 4.19275 4.36921 4.47386 4.55283 4.61422 4.71024 4.95262 4.98741 5.07227 5.15802 5.21792 5.25972 5.26501 5.33446 5.35353 5.52615 5.56964 5.65245 5.69065 5.74630 5.81553 5.86269 5.91035 5.93785 6.02001 6.07015 6.23664 6.28583 6.35674 6.43367 6.44479 6.48287 6.55383 6.76805 6.77900 6.98976 7.02040 7.75134 7.94116 8.08427 8.43778 8.49457 9.55852 10.11120 10.46180 11.48010 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010767 B = 0.003732 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.892992 B = 7501.528600 C = 9206.513132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.115 3.885 3 C -0.095 4.095 4 C 0.613 3.387 5 O -0.556 6.556 6 N -0.588 5.588 7 C 0.084 3.916 8 C 0.176 3.824 9 H 0.069 0.931 10 N -0.712 5.712 11 C -0.239 4.239 12 H 0.072 0.928 13 C -0.010 4.010 14 N -0.932 5.932 15 Si 0.905 3.095 16 H -0.291 1.291 17 H -0.292 1.292 18 H -0.281 1.281 19 C -0.090 4.090 20 C -0.129 4.129 21 C -0.125 4.125 22 C 0.122 3.878 23 N -0.189 5.189 24 N -0.070 5.070 25 N -0.361 5.361 26 C 0.145 3.855 27 C -0.162 4.162 28 C -0.164 4.164 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.386 0.614 35 H 0.255 0.745 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.044 0.956 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.107 0.893 45 H 0.063 0.937 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.081 0.919 49 H 0.064 0.936 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.994 -14.932 11.569 22.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.022 4.022 3 C -0.234 4.234 4 C 0.400 3.600 5 O -0.436 6.436 6 N -0.318 5.318 7 C -0.042 4.042 8 C 0.064 3.936 9 H 0.087 0.913 10 N -0.353 5.353 11 C -0.370 4.370 12 H 0.090 0.910 13 C -0.206 4.206 14 N -0.580 5.580 15 Si 0.737 3.263 16 H -0.218 1.218 17 H -0.219 1.219 18 H -0.207 1.207 19 C -0.091 4.091 20 C -0.186 4.186 21 C -0.182 4.182 22 C 0.000 4.000 23 N -0.062 5.062 24 N -0.049 5.049 25 N -0.148 5.148 26 C 0.043 3.957 27 C -0.220 4.220 28 C -0.221 4.221 29 H 0.107 0.893 30 H 0.130 0.870 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.222 0.778 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.125 0.875 45 H 0.082 0.918 46 H 0.099 0.901 47 H 0.094 0.906 48 H 0.099 0.901 49 H 0.083 0.917 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.967 -15.320 11.500 22.073 hybrid contribution -0.182 -0.190 -0.802 0.844 sum -11.148 -15.510 10.698 21.893 Atomic orbital electron populations 1.20677 0.85027 1.05152 1.04307 1.21842 0.96050 0.86469 0.97877 1.21162 0.89019 0.95230 1.18007 1.16328 0.84640 0.82065 0.76996 1.90709 1.15642 1.83557 1.53644 1.48156 1.07960 1.05836 1.69860 1.23290 0.77644 1.01155 1.02117 1.21289 0.94028 0.89466 0.88775 0.91297 1.42444 1.18514 1.62948 1.11426 1.19243 0.93146 1.27326 0.97300 0.91001 1.24708 0.98224 1.00593 0.97086 1.69660 1.35412 1.41328 1.11585 0.86215 0.83743 0.77459 0.78929 1.21813 1.21888 1.20692 1.22054 0.95490 0.96416 0.95157 1.21671 1.01535 1.01426 0.94011 1.21573 1.01068 0.93201 1.02393 1.22350 0.97499 0.79148 1.00984 1.74837 1.18837 1.03548 1.09013 1.81964 0.96072 1.03697 1.23147 1.50627 1.06511 1.06991 1.50652 1.21587 1.00277 0.75586 0.98215 1.22149 1.03318 1.00683 0.95806 1.22162 1.03408 1.00674 0.95895 0.89348 0.86962 0.91051 0.92237 0.89959 0.77831 0.93548 0.92317 0.92869 0.92872 0.91191 0.93678 0.92091 0.91047 0.91070 0.87505 0.91804 0.90069 0.90632 0.90064 0.91681 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.90 9.41 36.01 0.34 -0.56 16 2 C 0.12 1.54 7.02 -81.87 -0.57 0.97 16 3 C -0.09 -1.61 6.85 -83.55 -0.57 -2.19 16 4 C 0.61 11.33 7.85 -12.47 -0.10 11.23 16 5 O -0.56 -10.59 14.97 5.28 0.08 -10.52 16 6 N -0.59 -10.91 3.31 -171.61 -0.57 -11.48 16 7 C 0.08 1.62 4.94 -3.06 -0.02 1.61 16 8 C 0.18 3.48 2.86 -66.09 -0.19 3.29 16 9 H 0.07 1.36 8.03 -51.93 -0.42 0.94 16 10 N -0.71 -17.31 4.61 -51.65 -0.24 -17.54 16 11 C -0.24 -6.52 9.98 -15.06 -0.15 -6.67 16 12 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 13 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 14 N -0.93 -27.87 13.06 55.49 0.72 -27.14 16 15 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 16 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 17 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 C -0.09 -1.47 0.83 -152.24 -0.13 -1.60 16 20 C -0.13 -1.78 8.59 37.16 0.32 -1.47 16 21 C -0.12 -2.03 8.22 37.16 0.31 -1.73 16 22 C 0.12 2.13 5.82 -2.41 -0.01 2.11 16 23 N -0.19 -3.40 9.77 32.84 0.32 -3.08 16 24 N -0.07 -1.10 13.67 60.35 0.82 -0.28 16 25 N -0.36 -4.41 3.28 -50.40 -0.17 -4.58 16 26 C 0.14 1.09 3.68 -67.93 -0.25 0.84 16 27 C -0.16 -1.03 9.46 37.16 0.35 -0.68 16 28 C -0.16 -1.15 9.47 37.16 0.35 -0.80 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.11 1.32 6.43 -51.93 -0.33 0.98 16 31 H 0.07 0.47 7.19 -51.93 -0.37 0.10 16 32 H 0.06 1.10 7.62 -51.93 -0.40 0.70 16 33 H 0.08 1.86 7.63 -51.93 -0.40 1.47 16 34 H 0.39 9.97 6.10 -40.82 -0.25 9.72 16 35 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.76 7.91 -51.93 -0.41 0.34 16 39 H 0.07 1.31 6.38 -51.93 -0.33 0.98 16 40 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.07 1.34 7.99 -51.93 -0.41 0.93 16 43 H 0.07 1.16 7.96 -51.92 -0.41 0.74 16 44 H 0.11 0.54 6.79 -51.93 -0.35 0.19 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 399.74 15.07 6.02 6.02 Total: -1.00 -32.94 399.74 -6.72 -39.66 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -8.28 Total: 7.46 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -0.42 Total: 3.98 kcal Atomic # 7 Polarization: -65.00 SS G_CDS: 0.90 Total: -64.10 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.08 Total: -10.52 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.94 -6.72 -39.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996469058.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.437 kcal (2) G-P(sol) polarization free energy of solvation -32.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds