Wall clock time and date at job start Tue Mar 31 2020 18:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.36595 * 126.57799 * 2 1 4 4 C 1.47521 * 125.77241 * 0.03984 * 3 2 1 5 5 O 1.21596 * 120.00175 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99933 * 180.02562 * 4 3 2 7 7 C 1.47022 * 125.64363 * 0.02562 * 6 4 3 8 8 C 1.54331 * 107.26762 * 181.02499 * 7 6 4 9 9 H 1.08989 * 110.72092 * 140.55483 * 8 7 6 10 10 N 1.46498 * 110.71892 * 263.83057 * 8 7 6 11 11 C 1.36936 * 120.00213 * 273.54419 * 10 8 7 12 12 H 1.08005 * 119.99608 * 0.02562 * 11 10 8 13 13 C 1.38806 * 120.00434 * 180.02562 * 11 10 8 14 14 N 1.31624 * 119.99760 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00405 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47245 * 89.99549 * 15 13 11 17 17 H 1.48494 * 109.47441 * 209.99606 * 15 13 11 18 18 H 1.48502 * 109.46751 * 330.00011 * 15 13 11 19 19 C 1.55157 * 102.93924 * 22.19246 * 8 7 6 20 20 C 1.52999 * 111.00460 * 82.57717 * 19 8 7 21 21 C 1.53003 * 111.00019 * 206.38528 * 19 8 7 22 22 C 1.47421 * 125.64965 * 179.71107 * 6 4 3 23 23 N 1.34398 * 108.45462 * 180.02562 * 3 2 1 24 24 N 1.28768 * 109.52592 * 359.74793 * 23 3 2 25 25 N 1.34809 * 126.57902 * 180.02562 * 2 1 3 26 26 C 1.46504 * 126.59161 * 359.93177 * 25 2 1 27 27 C 1.53006 * 109.46883 * 239.99478 * 26 25 2 28 28 C 1.52999 * 109.47050 * 120.00276 * 26 25 2 29 29 H 1.08995 * 109.46778 * 269.95963 * 1 2 3 30 30 H 1.08999 * 109.47028 * 29.95480 * 1 2 3 31 31 H 1.08997 * 109.47207 * 149.95590 * 1 2 3 32 32 H 1.08995 * 109.88514 * 300.43897 * 7 6 4 33 33 H 1.08999 * 109.88703 * 61.45650 * 7 6 4 34 34 H 0.97000 * 120.00320 * 93.54394 * 10 8 7 35 35 H 0.97002 * 119.99827 * 180.02562 * 14 13 11 36 36 H 1.08997 * 109.47394 * 59.99172 * 20 19 8 37 37 H 1.09004 * 109.47351 * 179.97438 * 20 19 8 38 38 H 1.09003 * 109.46435 * 299.99379 * 20 19 8 39 39 H 1.08999 * 109.47258 * 60.00521 * 21 19 8 40 40 H 1.09003 * 109.46831 * 180.02562 * 21 19 8 41 41 H 1.08996 * 109.47435 * 300.00050 * 21 19 8 42 42 H 1.08999 * 110.36918 * 274.75064 * 22 6 4 43 43 H 1.09009 * 110.36414 * 37.07111 * 22 6 4 44 44 H 1.08993 * 109.47378 * 359.97438 * 26 25 2 45 45 H 1.09001 * 109.46998 * 59.99945 * 27 26 25 46 46 H 1.09000 * 109.47050 * 180.02562 * 27 26 25 47 47 H 1.09001 * 109.46801 * 300.00349 * 27 26 25 48 48 H 1.09000 * 109.47160 * 179.97438 * 28 26 25 49 49 H 1.09002 * 109.46719 * 299.99449 * 28 26 25 50 50 H 1.08993 * 109.47839 * 59.99291 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 0.0008 5 8 0.6860 2.7628 0.0011 6 7 2.7818 3.4988 0.0002 7 6 4.2419 3.3271 -0.0018 8 6 4.8691 4.7370 0.0246 9 1 5.7445 4.7575 0.6734 10 7 5.2153 5.1756 -1.3297 11 6 6.4269 4.8369 -1.8703 12 1 7.1272 4.2460 -1.2985 13 6 6.7552 5.2529 -3.1532 14 7 5.9016 5.9727 -3.8503 15 14 8.4078 4.7903 -3.8911 16 1 8.2842 3.4967 -4.6099 17 1 8.8382 5.8461 -4.8425 18 1 9.4146 4.6601 -2.8073 19 6 3.7304 5.6127 0.6110 20 6 3.7078 5.5318 2.1387 21 6 3.8587 7.0640 0.1435 22 6 2.4753 4.9408 -0.0051 23 7 3.5984 0.6789 -0.0006 24 7 3.6299 -0.6084 0.0044 25 7 2.3105 -1.0826 -0.0005 26 6 1.8863 -2.4849 0.0003 27 6 2.4304 -3.1815 1.2492 28 6 2.4279 -3.1822 -1.2492 29 1 -0.3633 -0.0007 1.0276 30 1 -0.3633 0.8904 -0.5131 31 1 -0.3633 -0.8896 -0.5145 32 1 4.5507 2.7675 0.8812 33 1 4.5518 2.7979 -0.9029 34 1 4.5863 5.7060 -1.8434 35 1 6.1309 6.2631 -4.7470 36 1 4.6597 5.8846 2.5354 37 1 2.9007 6.1552 2.5237 38 1 3.5469 4.4983 2.4453 39 1 3.8033 7.1015 -0.9444 40 1 3.0485 7.6558 0.5695 41 1 4.8157 7.4686 0.4728 42 1 2.3165 5.2911 -1.0250 43 1 1.5972 5.1442 0.6079 44 1 0.7975 -2.5351 0.0018 45 1 2.0446 -2.6847 2.1394 46 1 2.1152 -4.2249 1.2496 47 1 3.5192 -3.1312 1.2480 48 1 2.1127 -4.2256 -1.2485 49 1 2.0403 -2.6859 -2.1390 50 1 3.5166 -3.1319 -1.2504 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996469058.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:00 Heat of formation + Delta-G solvation = 49.098537 kcal Electronic energy + Delta-G solvation = -30397.310413 eV Core-core repulsion = 26461.111597 eV Total energy + Delta-G solvation = -3936.198816 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.34489 -41.17016 -39.20026 -37.38083 -35.73911 -34.62716 -33.97688 -32.60057 -31.94681 -29.46613 -29.11059 -28.29555 -28.00494 -27.30818 -25.74613 -24.98806 -23.81963 -22.76322 -21.27354 -20.43663 -20.07037 -19.09105 -18.30130 -17.46741 -17.24669 -17.08343 -16.57135 -16.34030 -15.77861 -15.47656 -15.35378 -15.24118 -14.88484 -14.59440 -14.35576 -14.13890 -13.98817 -13.97256 -13.77528 -13.51347 -13.23725 -13.22943 -13.19707 -13.03641 -12.90151 -12.82161 -12.75565 -12.67059 -12.54226 -12.37514 -12.16449 -12.05386 -11.91221 -11.77616 -11.44971 -11.29874 -11.15843 -11.08380 -10.89366 -10.23605 -9.58713 -8.99221 -7.91921 -5.19466 0.11325 0.62905 1.06758 1.47127 1.48739 1.56640 1.98121 2.20390 2.57257 3.12582 3.26920 3.39290 3.44505 3.58599 3.72352 3.79621 3.83116 3.91635 3.96139 4.06466 4.11242 4.33683 4.46266 4.51988 4.59168 4.60455 4.62338 4.66001 4.67973 4.70568 4.73516 4.82684 4.84181 4.91573 5.00144 5.04910 5.09151 5.13193 5.13949 5.16319 5.21617 5.31995 5.36222 5.41722 5.55168 5.58739 5.62896 6.29941 6.47349 6.84777 7.10869 7.37388 8.10970 8.35459 9.31321 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010767 B = 0.003732 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.892992 B = 7501.528600 C = 9206.513132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.131 3.869 3 C -0.133 4.133 4 C 0.609 3.391 5 O -0.565 6.565 6 N -0.594 5.594 7 C 0.105 3.895 8 C 0.168 3.832 9 H 0.073 0.927 10 N -0.720 5.720 11 C -0.235 4.235 12 H 0.075 0.925 13 C -0.070 4.070 14 N -0.967 5.967 15 Si 0.966 3.034 16 H -0.295 1.295 17 H -0.295 1.295 18 H -0.267 1.267 19 C -0.076 4.076 20 C -0.122 4.122 21 C -0.118 4.118 22 C 0.123 3.877 23 N -0.223 5.223 24 N -0.092 5.092 25 N -0.346 5.346 26 C 0.131 3.869 27 C -0.157 4.157 28 C -0.161 4.161 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.068 0.932 33 H 0.044 0.956 34 H 0.376 0.624 35 H 0.249 0.751 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.049 0.951 39 H 0.038 0.962 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.088 0.912 44 H 0.145 0.855 45 H 0.060 0.940 46 H 0.115 0.885 47 H 0.053 0.947 48 H 0.116 0.884 49 H 0.054 0.946 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.510 -16.859 13.435 25.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.009 4.009 3 C -0.272 4.272 4 C 0.397 3.603 5 O -0.445 6.445 6 N -0.324 5.324 7 C -0.021 4.021 8 C 0.058 3.942 9 H 0.091 0.909 10 N -0.360 5.360 11 C -0.367 4.367 12 H 0.093 0.907 13 C -0.263 4.263 14 N -0.618 5.618 15 Si 0.795 3.205 16 H -0.223 1.223 17 H -0.222 1.222 18 H -0.192 1.192 19 C -0.077 4.077 20 C -0.179 4.179 21 C -0.176 4.176 22 C 0.001 3.999 23 N -0.096 5.096 24 N -0.071 5.071 25 N -0.132 5.132 26 C 0.032 3.968 27 C -0.215 4.215 28 C -0.219 4.219 29 H 0.128 0.872 30 H 0.110 0.890 31 H 0.129 0.871 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.210 0.790 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.106 0.894 44 H 0.163 0.837 45 H 0.079 0.921 46 H 0.133 0.867 47 H 0.072 0.928 48 H 0.135 0.865 49 H 0.073 0.927 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.473 -17.294 13.415 25.192 hybrid contribution 0.179 0.249 -1.335 1.370 sum -12.294 -17.046 12.080 24.241 Atomic orbital electron populations 1.20827 0.82050 1.06077 1.05870 1.22355 0.97520 0.85619 0.95386 1.21236 0.89718 0.95437 1.20845 1.16612 0.84512 0.82734 0.76402 1.90685 1.15763 1.83975 1.54126 1.48211 1.07490 1.06431 1.70312 1.22856 0.78437 1.00192 1.00572 1.21507 0.95482 0.90394 0.86835 0.90926 1.42553 1.17541 1.62876 1.13071 1.19597 0.93953 1.25836 0.97300 0.90671 1.25430 1.01469 1.01549 0.97821 1.69811 1.37168 1.43200 1.11622 0.85250 0.80482 0.76522 0.78200 1.22285 1.22204 1.19212 1.22014 0.93061 0.95656 0.96999 1.21630 1.03134 1.01847 0.91286 1.21502 1.02115 0.93511 1.00464 1.22367 0.98632 0.78734 1.00180 1.74793 1.19899 1.04619 1.10257 1.81844 0.98301 1.03044 1.23896 1.51009 1.05133 1.08541 1.48567 1.22223 1.02527 0.73019 0.99003 1.22153 1.01900 1.02520 0.94929 1.22178 1.01908 1.02641 0.95145 0.87221 0.88977 0.87102 0.91383 0.93784 0.78964 0.94202 0.91236 0.90497 0.93234 0.94287 0.90556 0.92430 0.93263 0.89381 0.83718 0.92062 0.86677 0.92767 0.86532 0.92669 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.49 9.41 71.24 0.67 -0.82 16 2 C 0.13 3.33 7.02 41.72 0.29 3.62 16 3 C -0.13 -4.56 6.85 40.82 0.28 -4.28 16 4 C 0.61 22.83 7.85 86.69 0.68 23.51 16 5 O -0.57 -21.46 14.97 -4.02 -0.06 -21.52 16 6 N -0.59 -22.51 3.31 -815.09 -2.70 -25.21 16 7 C 0.11 4.23 4.94 86.73 0.43 4.65 16 8 C 0.17 6.74 2.86 46.18 0.13 6.88 16 9 H 0.07 2.86 8.03 -2.39 -0.02 2.84 16 10 N -0.72 -36.20 4.61 -317.33 -1.46 -37.66 16 11 C -0.24 -13.12 9.98 84.03 0.84 -12.28 16 12 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 13 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 14 N -0.97 -59.79 13.06 21.65 0.28 -59.51 16 15 Si 0.97 47.29 29.55 68.60 2.03 49.31 16 16 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 17 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 19 C -0.08 -2.45 0.83 -50.71 -0.04 -2.50 16 20 C -0.12 -3.09 8.59 71.98 0.62 -2.48 16 21 C -0.12 -3.80 8.22 71.98 0.59 -3.20 16 22 C 0.12 4.29 5.82 86.93 0.51 4.80 16 23 N -0.22 -8.28 9.77 -50.00 -0.49 -8.77 16 24 N -0.09 -2.95 13.67 37.02 0.51 -2.45 16 25 N -0.35 -8.01 3.28 -313.38 -1.03 -9.03 16 26 C 0.13 1.60 3.68 44.99 0.17 1.76 16 27 C -0.16 -1.59 9.46 71.98 0.68 -0.91 16 28 C -0.16 -1.90 9.47 71.98 0.68 -1.21 16 29 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.09 2.01 6.43 -2.39 -0.02 1.99 16 31 H 0.11 0.95 7.19 -2.39 -0.02 0.93 16 32 H 0.07 2.59 7.62 -2.39 -0.02 2.57 16 33 H 0.04 2.11 7.63 -2.39 -0.02 2.09 16 34 H 0.38 20.33 6.10 -92.71 -0.57 19.76 16 35 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 36 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.05 1.31 7.91 -2.39 -0.02 1.29 16 39 H 0.04 1.49 6.38 -2.39 -0.02 1.48 16 40 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.05 1.93 7.99 -2.39 -0.02 1.91 16 43 H 0.09 2.77 7.96 -2.38 -0.02 2.75 16 44 H 0.15 0.73 6.79 -2.39 -0.02 0.71 16 45 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -75.57 399.74 4.44 -71.13 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: 0.37 Total: 29.78 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 6.99 Total: 13.92 kcal Atomic # 7 Polarization: -137.74 SS G_CDS: -4.89 Total: -142.63 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.06 Total: -21.52 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.31 kcal Total: -75.57 4.44 -71.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996469058.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.233 kcal (2) G-P(sol) polarization free energy of solvation -75.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds