Wall clock time and date at job start Tue Mar 31 2020 20:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46972 * 2 1 4 4 C 1.52997 * 109.47452 * 119.99809 * 2 1 3 5 5 C 1.53005 * 109.46663 * 65.00322 * 4 2 1 6 6 N 1.46502 * 109.47131 * 180.02562 * 5 4 2 7 7 C 1.34810 * 126.59662 * 125.33463 * 6 5 4 8 8 C 1.36595 * 106.84267 * 180.15183 * 7 6 5 9 9 C 1.47528 * 125.77304 * 179.84124 * 8 7 6 10 10 O 1.21594 * 119.99655 * 353.44858 * 9 8 7 11 11 N 1.34774 * 119.99974 * 173.72170 * 9 8 7 12 12 C 1.46919 * 120.63187 * 184.12592 * 11 9 8 13 13 C 1.53626 * 108.54546 * 126.37047 * 12 11 9 14 14 C 1.53038 * 109.24149 * 54.85640 * 13 12 11 15 15 N 1.46492 * 109.46140 * 178.49318 * 14 13 12 16 16 C 1.36945 * 119.99859 * 275.06807 * 15 14 13 17 17 H 1.08001 * 120.00111 * 359.97438 * 16 15 14 18 18 C 1.38808 * 119.99777 * 179.97438 * 16 15 14 19 19 N 1.31620 * 120.00072 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00417 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47206 * 89.99534 * 20 18 16 22 22 H 1.48495 * 109.47326 * 209.99988 * 20 18 16 23 23 H 1.48504 * 109.46894 * 329.99907 * 20 18 16 24 24 C 1.53038 * 109.53708 * 298.51407 * 14 13 12 25 25 C 1.46926 * 120.63125 * 4.41185 * 11 9 8 26 26 N 1.34404 * 108.45784 * 359.57742 * 8 7 6 27 27 N 1.28760 * 109.52130 * 0.26410 * 26 8 7 28 28 H 1.08993 * 109.47211 * 59.99960 * 1 2 3 29 29 H 1.09004 * 109.46558 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47067 * 299.99741 * 1 2 3 31 31 H 1.09002 * 109.47577 * 240.00163 * 2 1 3 32 32 H 1.09007 * 109.47346 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47185 * 300.00056 * 3 2 1 34 34 H 1.09000 * 109.47013 * 60.00226 * 3 2 1 35 35 H 1.08999 * 109.47694 * 305.00674 * 4 2 1 36 36 H 1.09003 * 109.47761 * 184.99650 * 4 2 1 37 37 H 1.08994 * 109.47189 * 59.99999 * 5 4 2 38 38 H 1.08996 * 109.47269 * 299.99848 * 5 4 2 39 39 H 1.08000 * 126.57954 * 359.97438 * 7 6 5 40 40 H 1.09006 * 109.58713 * 246.20416 * 12 11 9 41 41 H 1.08999 * 109.58857 * 6.62465 * 12 11 9 42 42 H 1.09000 * 109.63125 * 294.86593 * 13 12 11 43 43 H 1.09002 * 109.42838 * 174.72680 * 13 12 11 44 44 H 1.09003 * 109.44925 * 58.52734 * 14 13 12 45 45 H 0.96999 * 120.00668 * 95.06916 * 15 14 13 46 46 H 0.96995 * 120.00384 * 179.97438 * 19 18 16 47 47 H 1.08995 * 109.49783 * 301.40913 * 24 14 13 48 48 H 1.09002 * 109.49737 * 181.31468 * 24 14 13 49 49 H 1.09005 * 109.58705 * 353.36494 * 25 11 9 50 50 H 1.08998 * 109.59388 * 113.65111 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1955 1.1879 6 7 2.1232 -2.8860 2.3843 7 6 1.3868 -3.6104 3.2505 8 6 2.2426 -4.0661 4.2128 9 6 1.8722 -4.9022 5.3704 10 8 0.7022 -5.1449 5.5956 11 7 2.8304 -5.3926 6.1816 12 6 2.4853 -6.2997 7.2845 13 6 3.3385 -7.5709 7.1568 14 6 4.8177 -7.1822 7.1025 15 7 5.6377 -8.3930 7.0169 16 6 5.9896 -9.0637 8.1578 17 1 5.6630 -8.6998 9.1207 18 6 6.7662 -10.2114 8.0766 19 7 7.1049 -10.8558 9.1732 20 14 7.3319 -10.8406 6.4112 21 1 8.6415 -10.2296 6.0699 22 1 7.4731 -12.3180 6.4621 23 1 6.3305 -10.4745 5.3776 24 6 5.0719 -6.3063 5.8736 25 6 4.2391 -5.0252 5.9835 26 7 3.4801 -3.6288 3.9234 27 7 3.4468 -2.9255 2.8453 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.6054 -0.2618 2.1370 36 1 3.1264 -0.6443 1.2951 37 1 2.0699 -2.6549 0.3002 38 1 0.5491 -2.2724 1.1420 39 1 0.3238 -3.7929 3.1959 40 1 2.6920 -5.8119 8.2372 41 1 1.4285 -6.5599 7.2267 42 1 3.0685 -8.1030 6.2446 43 1 3.1626 -8.2138 8.0193 44 1 5.0808 -6.6285 8.0038 45 1 5.9315 -8.7198 6.1521 46 1 7.6472 -11.6579 9.1165 47 1 4.7857 -6.8503 4.9736 48 1 6.1299 -6.0491 5.8228 49 1 4.3398 -4.4442 5.0666 50 1 4.5851 -4.4334 6.8309 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996994257.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:27 Heat of formation + Delta-G solvation = 74.716896 kcal Electronic energy + Delta-G solvation = -28781.864519 eV Core-core repulsion = 24846.776598 eV Total energy + Delta-G solvation = -3935.087921 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -42.52800 -39.73737 -37.81552 -37.34717 -34.88258 -34.37864 -32.02393 -31.43880 -30.80044 -29.93660 -29.38404 -27.81090 -25.32965 -25.19776 -23.66498 -22.72686 -22.17444 -21.85881 -20.72463 -20.37055 -19.28041 -17.89773 -17.27756 -16.64747 -16.42021 -16.12430 -15.75390 -15.18165 -15.03982 -14.75755 -14.43599 -14.35626 -14.03425 -13.85935 -13.75687 -13.47111 -13.20117 -12.98161 -12.84323 -12.68485 -12.64433 -12.43116 -12.32923 -12.05882 -11.67412 -11.61953 -11.38046 -11.27274 -11.13988 -10.95405 -10.88987 -10.67887 -10.62202 -10.38546 -10.21121 -10.03746 -9.58059 -9.52537 -9.45703 -8.86940 -8.44271 -7.22322 -5.73347 -3.08380 0.87427 1.52734 1.67661 3.04594 3.25874 3.40915 3.44367 3.48313 3.76572 3.93858 4.06674 4.19636 4.32740 4.42881 4.55573 4.61428 4.62842 4.69588 4.93092 4.98239 5.04914 5.06318 5.18036 5.20648 5.22837 5.30079 5.35423 5.41582 5.46120 5.53027 5.57102 5.62652 5.66583 5.71151 5.76911 5.86053 5.97300 6.03190 6.19227 6.29442 6.35705 6.45562 6.55301 6.65723 6.95187 7.04548 7.47863 7.73367 8.03448 8.18960 8.46042 9.24818 9.97731 10.18080 11.45051 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.022273 B = 0.002101 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.849214 B =13325.701645 C =14016.878114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.129 4.129 5 C 0.119 3.881 6 N -0.358 5.358 7 C 0.091 3.909 8 C -0.090 4.090 9 C 0.600 3.400 10 O -0.549 6.549 11 N -0.587 5.587 12 C 0.112 3.888 13 C -0.148 4.148 14 C 0.181 3.819 15 N -0.749 5.749 16 C -0.241 4.241 17 H 0.091 0.909 18 C 0.003 3.997 19 N -0.935 5.935 20 Si 0.884 3.116 21 H -0.284 1.284 22 H -0.292 1.292 23 H -0.278 1.278 24 C -0.138 4.138 25 C 0.072 3.928 26 N -0.203 5.203 27 N -0.064 5.064 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.204 0.796 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.057 0.943 43 H 0.079 0.921 44 H 0.057 0.943 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.059 0.941 48 H 0.076 0.924 49 H 0.140 0.860 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.919 24.780 -20.527 35.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.168 4.168 5 C -0.002 4.002 6 N -0.144 5.144 7 C -0.066 4.066 8 C -0.229 4.229 9 C 0.385 3.615 10 O -0.427 6.427 11 N -0.318 5.318 12 C -0.010 4.010 13 C -0.189 4.189 14 C 0.072 3.928 15 N -0.390 5.390 16 C -0.371 4.371 17 H 0.108 0.892 18 C -0.192 4.192 19 N -0.583 5.583 20 Si 0.714 3.286 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.204 1.204 24 C -0.177 4.177 25 C -0.052 4.052 26 N -0.075 5.075 27 N -0.044 5.044 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.221 0.779 40 H 0.087 0.913 41 H 0.105 0.895 42 H 0.076 0.924 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.193 0.807 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.095 0.905 49 H 0.156 0.844 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.057 25.046 -20.454 35.260 hybrid contribution -0.502 -1.016 -1.025 1.528 sum -14.559 24.030 -21.479 35.366 Atomic orbital electron populations 1.21967 0.94921 1.01900 1.02426 1.21069 0.96036 0.96773 0.97378 1.21826 1.01337 0.95281 1.02099 1.21983 1.03217 0.92150 0.99400 1.22218 1.00685 0.93333 0.83949 1.50531 1.07937 1.35447 1.20446 1.23346 0.99958 0.93455 0.89832 1.21528 0.89653 1.09927 1.01832 1.16807 0.85098 0.78928 0.80622 1.90777 1.17795 1.60987 1.73168 1.47981 1.07792 1.45921 1.30109 1.21866 1.00731 0.90283 0.88143 1.22695 0.97679 0.95798 1.02769 1.20199 0.89132 0.87660 0.95858 1.42809 1.61827 1.28682 1.05729 1.19091 1.26093 1.05008 0.86900 0.89164 1.24666 1.00342 0.97845 0.96363 1.69700 1.42314 1.20317 1.25938 0.86553 0.78775 0.78160 0.85066 1.21110 1.21849 1.20402 1.22189 1.00063 0.96004 0.99491 1.22863 0.78736 0.97847 1.05777 1.74169 1.19541 1.06783 1.07015 1.82008 0.95731 1.18722 1.07896 0.92225 0.92525 0.92324 0.90582 0.92331 0.92313 0.92498 0.90845 0.89812 0.88296 0.87572 0.77925 0.91323 0.89499 0.92422 0.90229 0.92524 0.80718 0.93132 0.92263 0.90538 0.84379 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.38 8.95 37.16 0.33 -0.05 16 2 C -0.09 -0.28 2.92 -90.62 -0.26 -0.54 16 3 C -0.15 -0.51 9.19 37.16 0.34 -0.17 16 4 C -0.13 -0.54 4.89 -26.73 -0.13 -0.67 16 5 C 0.12 0.49 6.30 -4.04 -0.03 0.46 16 6 N -0.36 -2.95 3.69 -61.06 -0.23 -3.18 16 7 C 0.09 0.83 11.28 -16.84 -0.19 0.64 16 8 C -0.09 -1.15 6.77 -83.55 -0.57 -1.71 16 9 C 0.60 9.05 7.69 -12.47 -0.10 8.95 16 10 O -0.55 -9.28 16.30 5.28 0.09 -9.19 16 11 N -0.59 -8.91 2.97 -173.73 -0.52 -9.43 16 12 C 0.11 1.74 6.45 -3.49 -0.02 1.71 16 13 C -0.15 -2.67 5.67 -26.39 -0.15 -2.82 16 14 C 0.18 3.52 2.73 -67.90 -0.19 3.33 16 15 N -0.75 -17.90 4.93 -53.39 -0.26 -18.16 16 16 C -0.24 -6.82 10.41 -15.06 -0.16 -6.97 16 17 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 18 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 19 N -0.93 -29.58 13.97 55.49 0.78 -28.81 16 20 Si 0.88 22.50 27.74 -169.99 -4.71 17.79 16 21 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 23 H -0.28 -6.73 6.52 56.52 0.37 -6.36 16 24 C -0.14 -2.27 5.55 -26.61 -0.15 -2.42 16 25 C 0.07 1.03 6.31 -3.71 -0.02 1.01 16 26 N -0.20 -2.65 8.63 32.85 0.28 -2.36 16 27 N -0.06 -0.74 13.65 60.35 0.82 0.08 16 28 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.06 0.09 6.57 -51.93 -0.34 -0.25 16 30 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 34 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.11 0.19 6.51 -51.93 -0.34 -0.15 16 39 H 0.20 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.09 1.35 7.03 -51.93 -0.37 0.99 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 44 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 45 H 0.36 8.57 5.66 -40.82 -0.23 8.34 16 46 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 47 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 48 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 49 H 0.14 1.94 3.60 -131.38 -0.47 1.47 16 50 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 397.21 15.07 5.99 5.99 Total: -1.00 -34.80 397.21 -7.67 -42.46 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -8.52 Total: 4.06 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -1.38 Total: 0.75 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: 0.88 Total: -61.86 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.71 Total: 17.79 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.80 -7.67 -42.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996994257.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.179 kcal (2) G-P(sol) polarization free energy of solvation -34.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds