Wall clock time and date at job start Tue Mar 31 2020 20:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46972 * 2 1 4 4 C 1.52997 * 109.47452 * 119.99809 * 2 1 3 5 5 C 1.53005 * 109.46663 * 65.00322 * 4 2 1 6 6 N 1.46502 * 109.47131 * 180.02562 * 5 4 2 7 7 C 1.34810 * 126.59662 * 125.33463 * 6 5 4 8 8 C 1.36595 * 106.84267 * 180.15183 * 7 6 5 9 9 C 1.47528 * 125.77304 * 179.84124 * 8 7 6 10 10 O 1.21594 * 119.99655 * 353.44858 * 9 8 7 11 11 N 1.34774 * 119.99974 * 173.72170 * 9 8 7 12 12 C 1.46919 * 120.63187 * 184.12592 * 11 9 8 13 13 C 1.53626 * 108.54546 * 126.37047 * 12 11 9 14 14 C 1.53038 * 109.24149 * 54.85640 * 13 12 11 15 15 N 1.46492 * 109.46140 * 178.49318 * 14 13 12 16 16 C 1.36945 * 119.99859 * 275.06807 * 15 14 13 17 17 H 1.08001 * 120.00111 * 359.97438 * 16 15 14 18 18 C 1.38808 * 119.99777 * 179.97438 * 16 15 14 19 19 N 1.31620 * 120.00072 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00417 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47206 * 89.99534 * 20 18 16 22 22 H 1.48495 * 109.47326 * 209.99988 * 20 18 16 23 23 H 1.48504 * 109.46894 * 329.99907 * 20 18 16 24 24 C 1.53038 * 109.53708 * 298.51407 * 14 13 12 25 25 C 1.46926 * 120.63125 * 4.41185 * 11 9 8 26 26 N 1.34404 * 108.45784 * 359.57742 * 8 7 6 27 27 N 1.28760 * 109.52130 * 0.26410 * 26 8 7 28 28 H 1.08993 * 109.47211 * 59.99960 * 1 2 3 29 29 H 1.09004 * 109.46558 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47067 * 299.99741 * 1 2 3 31 31 H 1.09002 * 109.47577 * 240.00163 * 2 1 3 32 32 H 1.09007 * 109.47346 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47185 * 300.00056 * 3 2 1 34 34 H 1.09000 * 109.47013 * 60.00226 * 3 2 1 35 35 H 1.08999 * 109.47694 * 305.00674 * 4 2 1 36 36 H 1.09003 * 109.47761 * 184.99650 * 4 2 1 37 37 H 1.08994 * 109.47189 * 59.99999 * 5 4 2 38 38 H 1.08996 * 109.47269 * 299.99848 * 5 4 2 39 39 H 1.08000 * 126.57954 * 359.97438 * 7 6 5 40 40 H 1.09006 * 109.58713 * 246.20416 * 12 11 9 41 41 H 1.08999 * 109.58857 * 6.62465 * 12 11 9 42 42 H 1.09000 * 109.63125 * 294.86593 * 13 12 11 43 43 H 1.09002 * 109.42838 * 174.72680 * 13 12 11 44 44 H 1.09003 * 109.44925 * 58.52734 * 14 13 12 45 45 H 0.96999 * 120.00668 * 95.06916 * 15 14 13 46 46 H 0.96995 * 120.00384 * 179.97438 * 19 18 16 47 47 H 1.08995 * 109.49783 * 301.40913 * 24 14 13 48 48 H 1.09002 * 109.49737 * 181.31468 * 24 14 13 49 49 H 1.09005 * 109.58705 * 353.36494 * 25 11 9 50 50 H 1.08998 * 109.59388 * 113.65111 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1955 1.1879 6 7 2.1232 -2.8860 2.3843 7 6 1.3868 -3.6104 3.2505 8 6 2.2426 -4.0661 4.2128 9 6 1.8722 -4.9022 5.3704 10 8 0.7022 -5.1449 5.5956 11 7 2.8304 -5.3926 6.1816 12 6 2.4853 -6.2997 7.2845 13 6 3.3385 -7.5709 7.1568 14 6 4.8177 -7.1822 7.1025 15 7 5.6377 -8.3930 7.0169 16 6 5.9896 -9.0637 8.1578 17 1 5.6630 -8.6998 9.1207 18 6 6.7662 -10.2114 8.0766 19 7 7.1049 -10.8558 9.1732 20 14 7.3319 -10.8406 6.4112 21 1 8.6415 -10.2296 6.0699 22 1 7.4731 -12.3180 6.4621 23 1 6.3305 -10.4745 5.3776 24 6 5.0719 -6.3063 5.8736 25 6 4.2391 -5.0252 5.9835 26 7 3.4801 -3.6288 3.9234 27 7 3.4468 -2.9255 2.8453 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.6054 -0.2618 2.1370 36 1 3.1264 -0.6443 1.2951 37 1 2.0699 -2.6549 0.3002 38 1 0.5491 -2.2724 1.1420 39 1 0.3238 -3.7929 3.1959 40 1 2.6920 -5.8119 8.2372 41 1 1.4285 -6.5599 7.2267 42 1 3.0685 -8.1030 6.2446 43 1 3.1626 -8.2138 8.0193 44 1 5.0808 -6.6285 8.0038 45 1 5.9315 -8.7198 6.1521 46 1 7.6472 -11.6579 9.1165 47 1 4.7857 -6.8503 4.9736 48 1 6.1299 -6.0491 5.8228 49 1 4.3398 -4.4442 5.0666 50 1 4.5851 -4.4334 6.8309 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996994257.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:25 Heat of formation + Delta-G solvation = 51.968556 kcal Electronic energy + Delta-G solvation = -28782.850961 eV Core-core repulsion = 24846.776598 eV Total energy + Delta-G solvation = -3936.074363 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.33368 -40.93145 -38.76121 -38.14650 -36.30364 -35.26733 -33.90125 -32.53973 -31.79384 -31.50327 -30.22415 -28.01531 -26.81888 -25.75528 -25.05098 -24.03901 -23.38906 -22.79565 -21.75258 -20.95138 -20.55995 -19.56838 -18.51507 -17.58957 -17.20202 -17.02204 -16.68957 -16.24282 -16.09072 -15.89790 -15.85667 -15.18276 -14.97666 -14.94941 -14.74344 -14.60527 -14.39507 -14.16292 -14.07022 -13.89115 -13.27667 -13.22287 -13.09038 -12.95211 -12.93182 -12.74816 -12.45523 -12.35433 -12.15697 -11.94770 -11.91982 -11.85327 -11.75543 -11.59004 -11.51297 -11.35953 -11.27163 -10.94896 -10.73236 -10.37927 -9.67291 -9.29689 -8.00855 -5.33845 0.14762 0.56498 1.07956 1.37900 1.40614 1.47709 1.93374 2.19520 2.49134 3.06222 3.28340 3.29933 3.55591 3.66253 3.76359 3.87833 3.93291 3.99183 4.03430 4.17052 4.18468 4.24099 4.27825 4.34049 4.40733 4.44916 4.53588 4.59765 4.74298 4.78788 4.80996 4.85024 4.86946 4.98149 4.98892 5.05964 5.08612 5.10416 5.24866 5.30187 5.32553 5.43024 5.46012 5.48696 5.51005 5.68436 5.79068 6.23360 6.33159 6.82671 7.08614 7.09010 7.85510 8.04842 9.20609 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.022273 B = 0.002101 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.849214 B =13325.701645 C =14016.878114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.088 4.088 3 C -0.151 4.151 4 C -0.124 4.124 5 C 0.110 3.890 6 N -0.344 5.344 7 C 0.112 3.888 8 C -0.120 4.120 9 C 0.600 3.400 10 O -0.571 6.571 11 N -0.593 5.593 12 C 0.121 3.879 13 C -0.137 4.137 14 C 0.175 3.825 15 N -0.751 5.751 16 C -0.226 4.226 17 H 0.059 0.941 18 C -0.065 4.065 19 N -0.984 5.984 20 Si 0.954 3.046 21 H -0.277 1.277 22 H -0.297 1.297 23 H -0.257 1.257 24 C -0.127 4.127 25 C 0.079 3.921 26 N -0.223 5.223 27 N -0.083 5.083 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.114 0.886 38 H 0.139 0.861 39 H 0.238 0.762 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.050 0.950 43 H 0.059 0.941 44 H 0.049 0.951 45 H 0.363 0.637 46 H 0.257 0.743 47 H 0.057 0.943 48 H 0.082 0.918 49 H 0.151 0.849 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.309 26.287 -23.680 38.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.107 4.107 3 C -0.208 4.208 4 C -0.162 4.162 5 C -0.009 4.009 6 N -0.128 5.128 7 C -0.045 4.045 8 C -0.259 4.259 9 C 0.388 3.612 10 O -0.451 6.451 11 N -0.324 5.324 12 C -0.002 4.002 13 C -0.178 4.178 14 C 0.067 3.933 15 N -0.394 5.394 16 C -0.357 4.357 17 H 0.077 0.923 18 C -0.256 4.256 19 N -0.635 5.635 20 Si 0.781 3.219 21 H -0.204 1.204 22 H -0.224 1.224 23 H -0.182 1.182 24 C -0.166 4.166 25 C -0.045 4.045 26 N -0.095 5.095 27 N -0.062 5.062 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.132 0.868 38 H 0.157 0.843 39 H 0.254 0.746 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.196 0.804 46 H 0.065 0.935 47 H 0.076 0.924 48 H 0.100 0.900 49 H 0.167 0.833 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.464 26.625 -23.660 38.831 hybrid contribution -0.168 -1.337 -0.065 1.349 sum -15.632 25.288 -23.725 38.036 Atomic orbital electron populations 1.21976 0.94223 1.02743 1.02284 1.21030 0.96512 0.96168 0.96969 1.21849 1.00994 0.95859 1.02104 1.21907 1.02127 0.92421 0.99734 1.22679 1.02680 0.92732 0.82762 1.50796 1.06783 1.34462 1.20798 1.23811 1.00895 0.91533 0.88292 1.21373 0.90624 1.11528 1.02423 1.17082 0.84626 0.78672 0.80840 1.90755 1.18545 1.61966 1.73848 1.48020 1.08218 1.45970 1.30153 1.21699 1.00083 0.89310 0.89080 1.22484 0.97061 0.96794 1.01490 1.20430 0.89184 0.86458 0.97256 1.42831 1.62475 1.29672 1.04405 1.19048 1.24664 1.04750 0.87213 0.92284 1.25464 1.01332 0.98509 1.00303 1.69878 1.43926 1.21097 1.28551 0.85425 0.78808 0.76926 0.80692 1.20358 1.22419 1.18170 1.22074 1.00908 0.96189 0.97464 1.22878 0.77997 0.96740 1.06856 1.74016 1.20118 1.07493 1.07851 1.81934 0.97589 1.18958 1.07717 0.92105 0.91173 0.92805 0.89756 0.92934 0.91828 0.93001 0.91620 0.91477 0.86784 0.84332 0.74619 0.90234 0.89391 0.93101 0.92191 0.93311 0.80369 0.93454 0.92436 0.89982 0.83318 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.34 8.95 71.98 0.64 0.31 16 2 C -0.09 -0.32 2.92 -10.79 -0.03 -0.35 16 3 C -0.15 -0.84 9.19 71.98 0.66 -0.18 16 4 C -0.12 -0.77 4.89 30.59 0.15 -0.62 16 5 C 0.11 0.52 6.30 86.38 0.54 1.06 16 6 N -0.34 -4.65 3.69 -347.10 -1.28 -5.93 16 7 C 0.11 1.70 11.28 83.85 0.95 2.65 16 8 C -0.12 -2.81 6.77 40.82 0.28 -2.53 16 9 C 0.60 17.21 7.69 86.69 0.67 17.88 16 10 O -0.57 -18.45 16.30 -4.01 -0.07 -18.52 16 11 N -0.59 -17.29 2.97 -821.82 -2.44 -19.73 16 12 C 0.12 3.67 6.45 86.51 0.56 4.23 16 13 C -0.14 -4.94 5.67 30.82 0.17 -4.77 16 14 C 0.17 6.73 2.73 45.02 0.12 6.86 16 15 N -0.75 -35.71 4.93 -322.83 -1.59 -37.30 16 16 C -0.23 -13.00 10.41 84.03 0.87 -12.13 16 17 H 0.06 3.71 8.06 -2.91 -0.02 3.68 16 18 C -0.06 -3.88 5.50 84.86 0.47 -3.41 16 19 N -0.98 -63.89 13.97 21.65 0.30 -63.59 16 20 Si 0.95 46.60 27.74 68.60 1.90 48.50 16 21 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 22 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 23 H -0.26 -11.51 6.52 99.48 0.65 -10.86 16 24 C -0.13 -4.01 5.55 30.67 0.17 -3.84 16 25 C 0.08 2.16 6.31 86.36 0.55 2.71 16 26 N -0.22 -5.46 8.63 -49.99 -0.43 -5.89 16 27 N -0.08 -1.75 13.65 37.02 0.51 -1.25 16 28 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.07 -0.04 6.57 -2.38 -0.02 -0.05 16 30 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.05 0.35 8.14 -2.38 -0.02 0.33 16 33 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.14 -0.18 6.51 -2.39 -0.02 -0.20 16 39 H 0.24 1.81 8.06 -2.91 -0.02 1.79 16 40 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 41 H 0.09 2.68 7.03 -2.39 -0.02 2.66 16 42 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.05 1.96 8.08 -2.39 -0.02 1.94 16 45 H 0.36 16.77 5.66 -92.71 -0.52 16.25 16 46 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 47 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 49 H 0.15 3.97 3.60 -105.19 -0.38 3.59 16 50 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -76.57 397.21 3.66 -72.92 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: -0.02 Total: 22.93 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 6.77 Total: 7.85 kcal Atomic # 7 Polarization: -128.75 SS G_CDS: -4.93 Total: -133.69 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.07 Total: -18.52 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.90 Total: 48.50 kcal Total: -76.57 3.66 -72.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996994257.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.886 kcal (2) G-P(sol) polarization free energy of solvation -76.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds