Wall clock time and date at job start Tue Mar 31 2020 20:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47323 * 2 1 4 4 C 1.53002 * 109.47201 * 120.00399 * 2 1 3 5 5 C 1.53005 * 109.46909 * 175.00036 * 4 2 1 6 6 N 1.46505 * 109.46572 * 179.97438 * 5 4 2 7 7 C 1.34810 * 126.59222 * 125.00464 * 6 5 4 8 8 C 1.36594 * 106.84136 * 180.02562 * 7 6 5 9 9 C 1.47527 * 125.77106 * 179.97438 * 8 7 6 10 10 O 1.21593 * 119.99872 * 353.18804 * 9 8 7 11 11 N 1.34781 * 119.99395 * 173.19022 * 9 8 7 12 12 C 1.46919 * 120.63349 * 354.10189 * 11 9 8 13 13 C 1.53196 * 108.77440 * 126.41685 * 12 11 9 14 14 C 1.53041 * 109.31363 * 54.63380 * 13 12 11 15 15 C 1.53039 * 109.53694 * 298.63310 * 14 13 12 16 16 H 1.09000 * 109.49563 * 301.38229 * 15 14 13 17 17 N 1.46500 * 109.49882 * 181.31752 * 15 14 13 18 18 C 1.36932 * 120.00133 * 154.99836 * 17 15 14 19 19 H 1.08006 * 120.00185 * 0.02562 * 18 17 15 20 20 C 1.38808 * 120.00305 * 180.02562 * 18 17 15 21 21 N 1.31625 * 119.99845 * 359.72469 * 20 18 17 22 22 Si 1.86798 * 120.00283 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47613 * 89.99777 * 22 20 18 24 24 H 1.48504 * 109.46930 * 209.99948 * 22 20 18 25 25 H 1.48497 * 109.47058 * 329.99498 * 22 20 18 26 26 C 1.46934 * 120.62489 * 174.12300 * 11 9 8 27 27 N 1.34400 * 108.45411 * 0.23739 * 8 7 6 28 28 N 1.28763 * 109.52442 * 359.58927 * 27 8 7 29 29 H 1.09001 * 109.47279 * 299.99456 * 1 2 3 30 30 H 1.08994 * 109.47198 * 60.00102 * 1 2 3 31 31 H 1.09002 * 109.47074 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46892 * 240.00272 * 2 1 3 33 33 H 1.09001 * 109.46499 * 60.00066 * 3 2 1 34 34 H 1.08999 * 109.47552 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47051 * 300.00312 * 3 2 1 36 36 H 1.09002 * 109.47039 * 54.99853 * 4 2 1 37 37 H 1.08999 * 109.46829 * 294.99805 * 4 2 1 38 38 H 1.08996 * 109.47072 * 60.00256 * 5 4 2 39 39 H 1.08999 * 109.47186 * 299.99550 * 5 4 2 40 40 H 1.08007 * 126.58190 * 0.02562 * 7 6 5 41 41 H 1.09000 * 109.59141 * 6.62218 * 12 11 9 42 42 H 1.09003 * 109.70279 * 246.27049 * 12 11 9 43 43 H 1.08992 * 109.49323 * 294.67580 * 13 12 11 44 44 H 1.09001 * 109.52220 * 174.60034 * 13 12 11 45 45 H 1.08994 * 109.45560 * 178.61578 * 14 13 12 46 46 H 1.09002 * 109.44812 * 58.64990 * 14 13 12 47 47 H 0.96998 * 119.99916 * 335.00445 * 17 15 14 48 48 H 0.96996 * 120.00111 * 180.02562 * 21 20 18 49 49 H 1.08999 * 109.58263 * 113.79527 * 26 11 9 50 50 H 1.09001 * 109.58753 * 353.37823 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1878 6 7 4.0532 -1.5213 2.3843 7 6 4.8314 -2.6216 2.4160 8 6 5.0418 -2.9198 3.7323 9 6 5.8403 -4.0500 4.2435 10 8 6.2766 -4.8837 3.4734 11 7 6.0861 -4.1584 5.5643 12 6 5.6776 -3.0946 6.4916 13 6 4.8334 -3.7131 7.6104 14 6 5.6182 -4.8515 8.2663 15 6 5.9118 -5.9359 7.2271 16 1 4.9740 -6.3065 6.8131 17 7 6.6356 -7.0395 7.8630 18 6 6.5690 -8.2991 7.3301 19 1 5.9833 -8.4789 6.4407 20 6 7.2544 -9.3449 7.9329 21 7 7.9726 -9.1247 9.0137 22 14 7.1642 -11.0630 7.2055 23 1 8.2603 -11.2415 6.2197 24 1 7.3053 -12.0677 8.2900 25 1 5.8551 -11.2459 6.5287 26 6 6.7682 -5.3427 6.1040 27 7 4.3936 -2.0127 4.4829 28 7 3.8007 -1.1647 3.7165 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6054 -1.7199 1.2950 37 1 1.7517 -0.1584 2.1369 38 1 3.9994 0.1674 1.1420 39 1 3.8532 -1.3940 0.3001 40 1 5.2149 -3.1635 1.5640 41 1 5.0872 -2.3505 5.9569 42 1 6.5611 -2.6210 6.9197 43 1 3.9059 -4.1041 7.1924 44 1 4.6039 -2.9523 8.3565 45 1 5.0295 -5.2771 9.0789 46 1 6.5570 -4.4641 8.6622 47 1 7.1619 -6.8779 8.6616 48 1 8.4518 -9.8554 9.4348 49 1 7.7419 -5.0546 6.5002 50 1 6.8974 -6.0819 5.3135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000191961.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:00 Heat of formation + Delta-G solvation = 70.138868 kcal Electronic energy + Delta-G solvation = -28869.989534 eV Core-core repulsion = 24934.703095 eV Total energy + Delta-G solvation = -3935.286439 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -42.43301 -39.54927 -37.75438 -37.14841 -34.80011 -34.19304 -32.18687 -31.27246 -30.99243 -29.89170 -28.06733 -27.75331 -25.49401 -25.08745 -23.87661 -22.87420 -22.15233 -21.65621 -20.69225 -20.20307 -19.09330 -17.56416 -17.01439 -16.69026 -16.35730 -15.83137 -15.61305 -15.22370 -14.70218 -14.56699 -14.54122 -14.27959 -14.05883 -13.79376 -13.61933 -13.34762 -13.33196 -12.91436 -12.74519 -12.64172 -12.34035 -12.27796 -12.21033 -11.97710 -11.67654 -11.58846 -11.37114 -11.22694 -11.09795 -10.85485 -10.75318 -10.53605 -10.46437 -10.17424 -10.07924 -9.78377 -9.73020 -9.47924 -9.40249 -9.00285 -8.21351 -6.93491 -5.73376 -3.02665 0.96218 1.63925 1.75643 3.24787 3.42165 3.48656 3.53601 3.55339 3.84229 4.04931 4.11217 4.27720 4.34071 4.56034 4.59263 4.63745 4.71770 4.80596 4.98513 5.02242 5.08943 5.16065 5.24742 5.30100 5.36206 5.37256 5.37979 5.45783 5.50985 5.57953 5.61559 5.70476 5.76859 5.77444 5.94253 6.03812 6.11484 6.22499 6.29159 6.34554 6.41099 6.53254 6.61360 6.89549 6.92655 7.12509 7.67409 7.76617 7.85707 8.39977 8.45601 9.56585 10.11656 10.47272 11.48952 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020563 B = 0.002134 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.366936 B =13115.407838 C =13736.280131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.154 4.154 4 C -0.130 4.130 5 C 0.119 3.881 6 N -0.360 5.360 7 C 0.089 3.911 8 C -0.088 4.088 9 C 0.595 3.405 10 O -0.543 6.543 11 N -0.587 5.587 12 C 0.071 3.929 13 C -0.124 4.124 14 C -0.127 4.127 15 C 0.169 3.831 16 H 0.050 0.950 17 N -0.718 5.718 18 C -0.240 4.240 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.093 3.907 27 N -0.204 5.204 28 N -0.068 5.068 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.204 0.796 41 H 0.135 0.865 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.063 0.937 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.320 24.045 -17.871 32.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.211 4.211 4 C -0.168 4.168 5 C -0.001 4.001 6 N -0.145 5.145 7 C -0.067 4.067 8 C -0.227 4.227 9 C 0.380 3.620 10 O -0.420 6.420 11 N -0.318 5.318 12 C -0.053 4.053 13 C -0.162 4.162 14 C -0.166 4.166 15 C 0.058 3.942 16 H 0.069 0.931 17 N -0.358 5.358 18 C -0.371 4.371 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.581 5.581 22 Si 0.738 3.262 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.031 4.031 27 N -0.076 5.076 28 N -0.047 5.047 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.221 0.779 41 H 0.151 0.849 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.078 0.922 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.081 0.919 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.836 24.427 -17.462 32.655 hybrid contribution 0.741 -1.576 -0.784 1.909 sum -12.095 22.851 -18.247 31.645 Atomic orbital electron populations 1.21826 0.94446 1.02113 1.02169 1.21062 0.96520 0.96384 0.97236 1.21955 1.01005 0.95769 1.02387 1.21989 0.92408 1.02428 0.99989 1.22199 0.96541 0.98559 0.82834 1.50498 1.34909 1.20259 1.08840 1.23380 0.93918 0.89330 1.00112 1.21637 1.08775 1.01811 0.90453 1.16861 0.79437 0.83099 0.82645 1.90803 1.52962 1.42018 1.56235 1.48065 1.57049 1.21198 1.05515 1.22722 0.99617 0.90834 0.92142 1.21796 0.98905 0.98141 0.97398 1.21850 1.00083 0.95819 0.98802 1.20492 0.94379 0.88095 0.91277 0.93149 1.42386 1.57966 1.03825 1.31666 1.19281 1.24722 0.85241 1.07883 0.91058 1.24745 1.00070 0.98159 0.97848 1.69667 1.35486 1.31422 1.21486 0.86182 0.77697 0.84410 0.77892 1.21647 1.21826 1.20730 1.22839 0.95991 0.85515 0.98796 1.74186 1.06360 1.01651 1.25441 1.81964 1.20590 1.19410 0.82765 0.92371 0.92330 0.92478 0.90752 0.92199 0.92517 0.92338 0.90832 0.89832 0.88198 0.87744 0.77923 0.84866 0.92236 0.91837 0.91203 0.91600 0.92160 0.78064 0.93528 0.91894 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.19 37.16 0.34 -0.23 16 2 C -0.09 -0.32 2.92 -90.62 -0.26 -0.58 16 3 C -0.15 -0.49 8.95 37.16 0.33 -0.16 16 4 C -0.13 -0.62 4.89 -26.73 -0.13 -0.75 16 5 C 0.12 0.55 6.30 -4.04 -0.03 0.53 16 6 N -0.36 -3.18 3.69 -61.06 -0.23 -3.41 16 7 C 0.09 0.91 11.28 -16.84 -0.19 0.72 16 8 C -0.09 -1.21 6.74 -83.55 -0.56 -1.78 16 9 C 0.59 10.26 7.68 -12.47 -0.10 10.17 16 10 O -0.54 -10.85 16.31 5.28 0.09 -10.77 16 11 N -0.59 -10.13 2.97 -174.00 -0.52 -10.64 16 12 C 0.07 1.02 6.32 -3.71 -0.02 1.00 16 13 C -0.12 -1.77 6.08 -26.61 -0.16 -1.93 16 14 C -0.13 -2.18 5.35 -26.69 -0.14 -2.33 16 15 C 0.17 3.53 2.92 -67.81 -0.20 3.34 16 16 H 0.05 1.13 8.08 -51.93 -0.42 0.71 16 17 N -0.72 -18.36 5.12 -53.31 -0.27 -18.64 16 18 C -0.24 -6.83 9.93 -15.06 -0.15 -6.98 16 19 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -28.45 13.06 55.49 0.72 -27.72 16 22 Si 0.91 22.98 29.55 -169.99 -5.02 17.96 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 25 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 26 C 0.09 1.86 6.00 -3.71 -0.02 1.84 16 27 N -0.20 -2.76 8.71 32.85 0.29 -2.47 16 28 N -0.07 -0.81 13.65 60.35 0.82 0.02 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.06 0.15 6.57 -51.93 -0.34 -0.19 16 35 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.10 0.36 6.57 -51.93 -0.34 0.02 16 39 H 0.10 0.23 8.08 -51.93 -0.42 -0.19 16 40 H 0.20 1.49 8.06 -52.48 -0.42 1.07 16 41 H 0.13 1.86 3.66 -121.26 -0.44 1.42 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.39 10.34 7.80 -40.82 -0.32 10.02 16 48 H 0.25 7.53 8.31 -40.82 -0.34 7.20 16 49 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 50 H 0.09 2.05 7.04 -51.93 -0.37 1.68 16 LS Contribution 400.42 15.07 6.03 6.03 Total: -1.00 -34.08 400.42 -8.01 -42.09 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -8.54 Total: 5.17 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -1.39 Total: 2.39 kcal Atomic # 7 Polarization: -63.69 SS G_CDS: 0.82 Total: -62.87 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.08 -8.01 -42.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000191961.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.226 kcal (2) G-P(sol) polarization free energy of solvation -34.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds