Wall clock time and date at job start Tue Mar 31 2020 20:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47323 * 2 1 4 4 C 1.53002 * 109.47201 * 120.00399 * 2 1 3 5 5 C 1.53005 * 109.46909 * 175.00036 * 4 2 1 6 6 N 1.46505 * 109.46572 * 179.97438 * 5 4 2 7 7 C 1.34810 * 126.59222 * 125.00464 * 6 5 4 8 8 C 1.36594 * 106.84136 * 180.02562 * 7 6 5 9 9 C 1.47527 * 125.77106 * 179.97438 * 8 7 6 10 10 O 1.21593 * 119.99872 * 353.18804 * 9 8 7 11 11 N 1.34781 * 119.99395 * 173.19022 * 9 8 7 12 12 C 1.46919 * 120.63349 * 354.10189 * 11 9 8 13 13 C 1.53196 * 108.77440 * 126.41685 * 12 11 9 14 14 C 1.53041 * 109.31363 * 54.63380 * 13 12 11 15 15 C 1.53039 * 109.53694 * 298.63310 * 14 13 12 16 16 H 1.09000 * 109.49563 * 301.38229 * 15 14 13 17 17 N 1.46500 * 109.49882 * 181.31752 * 15 14 13 18 18 C 1.36932 * 120.00133 * 154.99836 * 17 15 14 19 19 H 1.08006 * 120.00185 * 0.02562 * 18 17 15 20 20 C 1.38808 * 120.00305 * 180.02562 * 18 17 15 21 21 N 1.31625 * 119.99845 * 359.72469 * 20 18 17 22 22 Si 1.86798 * 120.00283 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47613 * 89.99777 * 22 20 18 24 24 H 1.48504 * 109.46930 * 209.99948 * 22 20 18 25 25 H 1.48497 * 109.47058 * 329.99498 * 22 20 18 26 26 C 1.46934 * 120.62489 * 174.12300 * 11 9 8 27 27 N 1.34400 * 108.45411 * 0.23739 * 8 7 6 28 28 N 1.28763 * 109.52442 * 359.58927 * 27 8 7 29 29 H 1.09001 * 109.47279 * 299.99456 * 1 2 3 30 30 H 1.08994 * 109.47198 * 60.00102 * 1 2 3 31 31 H 1.09002 * 109.47074 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46892 * 240.00272 * 2 1 3 33 33 H 1.09001 * 109.46499 * 60.00066 * 3 2 1 34 34 H 1.08999 * 109.47552 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47051 * 300.00312 * 3 2 1 36 36 H 1.09002 * 109.47039 * 54.99853 * 4 2 1 37 37 H 1.08999 * 109.46829 * 294.99805 * 4 2 1 38 38 H 1.08996 * 109.47072 * 60.00256 * 5 4 2 39 39 H 1.08999 * 109.47186 * 299.99550 * 5 4 2 40 40 H 1.08007 * 126.58190 * 0.02562 * 7 6 5 41 41 H 1.09000 * 109.59141 * 6.62218 * 12 11 9 42 42 H 1.09003 * 109.70279 * 246.27049 * 12 11 9 43 43 H 1.08992 * 109.49323 * 294.67580 * 13 12 11 44 44 H 1.09001 * 109.52220 * 174.60034 * 13 12 11 45 45 H 1.08994 * 109.45560 * 178.61578 * 14 13 12 46 46 H 1.09002 * 109.44812 * 58.64990 * 14 13 12 47 47 H 0.96998 * 119.99916 * 335.00445 * 17 15 14 48 48 H 0.96996 * 120.00111 * 180.02562 * 21 20 18 49 49 H 1.08999 * 109.58263 * 113.79527 * 26 11 9 50 50 H 1.09001 * 109.58753 * 353.37823 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1878 6 7 4.0532 -1.5213 2.3843 7 6 4.8314 -2.6216 2.4160 8 6 5.0418 -2.9198 3.7323 9 6 5.8403 -4.0500 4.2435 10 8 6.2766 -4.8837 3.4734 11 7 6.0861 -4.1584 5.5643 12 6 5.6776 -3.0946 6.4916 13 6 4.8334 -3.7131 7.6104 14 6 5.6182 -4.8515 8.2663 15 6 5.9118 -5.9359 7.2271 16 1 4.9740 -6.3065 6.8131 17 7 6.6356 -7.0395 7.8630 18 6 6.5690 -8.2991 7.3301 19 1 5.9833 -8.4789 6.4407 20 6 7.2544 -9.3449 7.9329 21 7 7.9726 -9.1247 9.0137 22 14 7.1642 -11.0630 7.2055 23 1 8.2603 -11.2415 6.2197 24 1 7.3053 -12.0677 8.2900 25 1 5.8551 -11.2459 6.5287 26 6 6.7682 -5.3427 6.1040 27 7 4.3936 -2.0127 4.4829 28 7 3.8007 -1.1647 3.7165 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6054 -1.7199 1.2950 37 1 1.7517 -0.1584 2.1369 38 1 3.9994 0.1674 1.1420 39 1 3.8532 -1.3940 0.3001 40 1 5.2149 -3.1635 1.5640 41 1 5.0872 -2.3505 5.9569 42 1 6.5611 -2.6210 6.9197 43 1 3.9059 -4.1041 7.1924 44 1 4.6039 -2.9523 8.3565 45 1 5.0295 -5.2771 9.0789 46 1 6.5570 -4.4641 8.6622 47 1 7.1619 -6.8779 8.6616 48 1 8.4518 -9.8554 9.4348 49 1 7.7419 -5.0546 6.5002 50 1 6.8974 -6.0819 5.3135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000191961.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:57 Heat of formation + Delta-G solvation = 48.100528 kcal Electronic energy + Delta-G solvation = -28870.945188 eV Core-core repulsion = 24934.703095 eV Total energy + Delta-G solvation = -3936.242093 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.33388 -40.91420 -38.66296 -38.13817 -36.25763 -35.24479 -33.86594 -32.73782 -32.11977 -30.70692 -29.66841 -28.01447 -26.82806 -25.96835 -25.54495 -24.02651 -23.28405 -22.78021 -21.72397 -20.90005 -20.36399 -19.13040 -18.58756 -17.56078 -17.25374 -16.96966 -16.78463 -16.33604 -15.97125 -15.73918 -15.59559 -15.30859 -15.13725 -15.08244 -14.82641 -14.70547 -14.16945 -14.02465 -13.85868 -13.68198 -13.40202 -13.21364 -13.08817 -12.89584 -12.77904 -12.69871 -12.48600 -12.31997 -12.18077 -12.05055 -11.89203 -11.83399 -11.68914 -11.53734 -11.40058 -11.34208 -11.17411 -11.08851 -10.78637 -10.37115 -9.71337 -9.00765 -7.96818 -5.26418 0.13759 0.55851 1.07253 1.45480 1.47689 1.55842 1.95176 2.18626 2.54961 3.08140 3.29139 3.36061 3.67711 3.76024 3.80974 3.92111 3.96739 3.99850 4.02912 4.10917 4.20594 4.27758 4.34453 4.37800 4.41657 4.44872 4.49299 4.74553 4.75116 4.76453 4.82083 4.88831 4.89635 4.98536 5.06038 5.06735 5.09040 5.13502 5.25797 5.31601 5.38297 5.41433 5.45657 5.46382 5.49347 5.51799 5.68260 6.25150 6.38585 6.83913 7.09951 7.31845 8.03382 8.29809 9.25836 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020563 B = 0.002134 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.366936 B =13115.407838 C =13736.280131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 C -0.154 4.154 4 C -0.125 4.125 5 C 0.110 3.890 6 N -0.343 5.343 7 C 0.111 3.889 8 C -0.117 4.117 9 C 0.592 3.408 10 O -0.579 6.579 11 N -0.591 5.591 12 C 0.070 3.930 13 C -0.114 4.114 14 C -0.118 4.118 15 C 0.168 3.832 16 H 0.033 0.967 17 N -0.728 5.728 18 C -0.245 4.245 19 H 0.067 0.933 20 C -0.070 4.070 21 N -0.964 5.964 22 Si 0.971 3.029 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.273 1.273 26 C 0.108 3.892 27 N -0.218 5.218 28 N -0.078 5.078 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.117 0.883 39 H 0.139 0.861 40 H 0.234 0.766 41 H 0.147 0.853 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.103 0.897 45 H 0.062 0.938 46 H 0.066 0.934 47 H 0.377 0.623 48 H 0.252 0.748 49 H 0.060 0.940 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.212 25.848 -19.777 35.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.106 4.106 3 C -0.212 4.212 4 C -0.163 4.163 5 C -0.009 4.009 6 N -0.128 5.128 7 C -0.047 4.047 8 C -0.256 4.256 9 C 0.379 3.621 10 O -0.459 6.459 11 N -0.322 5.322 12 C -0.053 4.053 13 C -0.153 4.153 14 C -0.156 4.156 15 C 0.059 3.941 16 H 0.051 0.949 17 N -0.368 5.368 18 C -0.377 4.377 19 H 0.085 0.915 20 C -0.262 4.262 21 N -0.614 5.614 22 Si 0.799 3.201 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.198 1.198 26 C -0.017 4.017 27 N -0.090 5.090 28 N -0.058 5.058 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.135 0.865 39 H 0.157 0.843 40 H 0.250 0.750 41 H 0.164 0.836 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.122 0.878 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.210 0.790 48 H 0.061 0.939 49 H 0.078 0.922 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.781 26.306 -19.396 35.470 hybrid contribution 0.923 -1.999 -0.316 2.224 sum -12.857 24.307 -19.712 33.834 Atomic orbital electron populations 1.21849 0.95027 1.01832 1.02107 1.21027 0.95993 0.96548 0.96989 1.21963 1.01616 0.95420 1.02163 1.21924 0.92551 1.01790 1.00059 1.22700 0.96309 0.99757 0.82123 1.50769 1.33543 1.19545 1.08937 1.23768 0.92444 0.88887 0.99584 1.21252 1.10463 1.01923 0.92008 1.17286 0.79041 0.83568 0.82160 1.90770 1.54504 1.43637 1.57009 1.48079 1.56977 1.20788 1.06336 1.22939 1.00335 0.90184 0.91802 1.21765 0.97914 0.97699 0.97886 1.21755 1.00828 0.95461 0.97584 1.20616 0.92986 0.88083 0.92445 0.94937 1.42504 1.58367 1.04294 1.31648 1.19541 1.23988 0.86640 1.07482 0.91476 1.25519 1.00346 1.01815 0.98559 1.69804 1.36591 1.32242 1.22789 0.85187 0.77871 0.79925 0.77078 1.21456 1.21676 1.19791 1.22303 0.95920 0.86197 0.97290 1.74052 1.06797 1.01896 1.26303 1.81889 1.20616 1.19124 0.84149 0.93133 0.91742 0.92876 0.89294 0.93090 0.91532 0.91967 0.91759 0.91455 0.86489 0.84330 0.74961 0.83637 0.91047 0.92435 0.87834 0.91948 0.91554 0.79008 0.93871 0.92209 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.19 71.98 0.66 -0.30 16 2 C -0.09 -0.38 2.92 -10.79 -0.03 -0.42 16 3 C -0.15 -0.62 8.95 71.98 0.64 0.03 16 4 C -0.12 -0.91 4.89 30.60 0.15 -0.76 16 5 C 0.11 0.63 6.30 86.38 0.54 1.17 16 6 N -0.34 -5.13 3.69 -347.08 -1.28 -6.41 16 7 C 0.11 1.99 11.28 83.85 0.95 2.94 16 8 C -0.12 -3.11 6.74 40.82 0.28 -2.84 16 9 C 0.59 20.48 7.68 86.69 0.67 21.15 16 10 O -0.58 -23.57 16.31 -4.01 -0.07 -23.63 16 11 N -0.59 -20.48 2.97 -822.66 -2.45 -22.93 16 12 C 0.07 1.94 6.32 86.37 0.55 2.48 16 13 C -0.11 -3.09 6.08 30.67 0.19 -2.90 16 14 C -0.12 -4.00 5.35 30.62 0.16 -3.84 16 15 C 0.17 7.23 2.92 45.07 0.13 7.36 16 16 H 0.03 1.50 8.08 -2.39 -0.02 1.48 16 17 N -0.73 -38.33 5.12 -322.58 -1.65 -39.98 16 18 C -0.24 -14.26 9.93 84.03 0.83 -13.42 16 19 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 20 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 21 N -0.96 -59.91 13.06 21.65 0.28 -59.63 16 22 Si 0.97 47.90 29.55 68.60 2.03 49.93 16 23 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 24 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 25 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 26 C 0.11 4.48 6.00 86.36 0.52 5.00 16 27 N -0.22 -5.59 8.71 -49.99 -0.44 -6.02 16 28 N -0.08 -1.70 13.65 37.02 0.51 -1.20 16 29 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.07 0.14 6.57 -2.39 -0.02 0.12 16 35 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.12 0.38 6.57 -2.39 -0.02 0.37 16 39 H 0.14 -0.05 8.08 -2.39 -0.02 -0.07 16 40 H 0.23 2.64 8.06 -2.91 -0.02 2.61 16 41 H 0.15 3.85 3.66 -92.10 -0.34 3.51 16 42 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.38 20.83 7.80 -92.71 -0.72 20.11 16 48 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 49 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 50 H 0.06 2.73 7.04 -2.39 -0.02 2.72 16 Total: -1.00 -75.94 400.42 3.52 -72.42 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: -0.12 Total: 25.46 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 6.70 Total: 11.99 kcal Atomic # 7 Polarization: -131.14 SS G_CDS: -5.03 Total: -136.17 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.07 Total: -23.63 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.03 Total: 49.93 kcal Total: -75.94 3.52 -72.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000191961.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.520 kcal (2) G-P(sol) polarization free energy of solvation -75.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds