Wall clock time and date at job start Tue Mar 31 2020 20:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50694 * 109.47347 * 2 1 4 4 C 1.36600 * 126.58128 * 269.97134 * 3 2 1 5 5 C 1.47524 * 125.76836 * 0.04103 * 4 3 2 6 6 O 1.21592 * 119.99850 * 0.02562 * 5 4 3 7 7 N 1.34775 * 120.00128 * 179.97438 * 5 4 3 8 8 C 1.46500 * 120.00202 * 180.02562 * 7 5 4 9 9 C 1.52993 * 109.47224 * 180.02562 * 8 7 5 10 10 C 1.53041 * 109.45914 * 295.02459 * 9 8 7 11 11 C 1.53192 * 109.31126 * 178.60117 * 10 9 8 12 12 N 1.46923 * 108.76489 * 54.65990 * 11 10 9 13 13 C 1.36936 * 120.62953 * 126.36296 * 12 11 10 14 14 H 1.08003 * 120.00421 * 331.85243 * 13 12 11 15 15 C 1.38818 * 119.99990 * 151.85754 * 13 12 11 16 16 N 1.31623 * 119.99607 * 343.07058 * 15 13 12 17 17 Si 1.86793 * 119.99987 * 163.06985 * 15 13 12 18 18 H 1.48499 * 109.47384 * 60.00078 * 17 15 13 19 19 H 1.48501 * 109.47347 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47413 * 300.00190 * 17 15 13 21 21 C 1.46921 * 118.73975 * 306.37753 * 12 11 10 22 22 C 1.53046 * 109.46121 * 174.97222 * 9 8 7 23 23 N 1.34398 * 108.45967 * 180.02562 * 4 3 2 24 24 N 1.28760 * 109.52497 * 359.75299 * 23 4 3 25 25 N 1.34817 * 126.58305 * 89.99732 * 3 2 1 26 26 C 1.46503 * 126.59478 * 359.94052 * 25 3 2 27 27 C 1.53003 * 109.46922 * 90.00140 * 26 25 3 28 28 H 1.09003 * 109.46679 * 59.99952 * 1 2 3 29 29 H 1.08999 * 109.47182 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47419 * 300.00194 * 1 2 3 31 31 H 1.08992 * 109.47558 * 239.99493 * 2 1 3 32 32 H 1.09004 * 109.47158 * 119.99833 * 2 1 3 33 33 H 0.97001 * 120.00083 * 0.02562 * 7 5 4 34 34 H 1.09001 * 109.47179 * 300.00401 * 8 7 5 35 35 H 1.09002 * 109.46767 * 59.99970 * 8 7 5 36 36 H 1.08999 * 109.46019 * 55.00047 * 9 8 7 37 37 H 1.09001 * 109.50027 * 298.56732 * 10 9 8 38 38 H 1.08999 * 109.49331 * 58.66880 * 10 9 8 39 39 H 1.09002 * 109.60142 * 294.86935 * 11 10 9 40 40 H 1.09001 * 109.69873 * 174.51140 * 11 10 9 41 41 H 0.96998 * 119.99365 * 179.97438 * 16 15 13 42 42 H 1.09001 * 109.59219 * 293.82850 * 21 12 11 43 43 H 1.08993 * 109.70749 * 173.46652 * 21 12 11 44 44 H 1.08992 * 109.49773 * 301.33737 * 22 9 8 45 45 H 1.09004 * 109.49152 * 61.39742 * 22 9 8 46 46 H 1.09000 * 109.47245 * 210.00254 * 26 25 3 47 47 H 1.08996 * 109.46894 * 330.00348 * 26 25 3 48 48 H 1.08997 * 109.46952 * 59.99871 * 27 26 25 49 49 H 1.08997 * 109.47085 * 180.02562 * 27 26 25 50 50 H 1.09005 * 109.46974 * 300.00489 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3042 2.1881 -1.0969 5 6 2.1550 1.7664 -2.5027 6 8 1.7579 0.6469 -2.7627 7 7 2.4577 2.6223 -3.4988 8 6 2.3090 2.2038 -4.8948 9 6 2.7165 3.3536 -5.8182 10 6 1.7432 4.5209 -5.6388 11 6 2.1746 5.6831 -6.5389 12 7 2.2836 5.1955 -7.9206 13 6 1.6152 5.8242 -8.9371 14 1 0.6944 6.3508 -8.7335 15 6 2.1210 5.7846 -10.2292 16 7 3.3767 5.4476 -10.4343 17 14 1.0196 6.2096 -11.6767 18 1 0.5222 7.6010 -11.5287 19 1 1.7932 6.0917 -12.9388 20 1 -0.1327 5.2735 -11.7137 21 6 3.1230 4.0204 -8.1909 22 6 2.6813 2.8770 -7.2721 23 7 2.7304 3.3922 -0.6789 24 7 2.7357 3.4238 0.6083 25 7 2.3001 2.1783 1.0826 26 6 2.1576 1.7790 2.4849 27 6 3.4676 1.1580 2.9740 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8898 32 1 1.8933 -0.5138 0.8900 33 1 2.7741 3.5155 -3.2914 34 1 2.9475 1.3413 -5.0856 35 1 1.2697 1.9355 -5.0849 36 1 3.7257 3.6804 -5.5675 37 1 0.7377 4.2018 -5.9133 38 1 1.7513 4.8447 -4.5981 39 1 3.1413 6.0626 -6.2080 40 1 1.4330 6.4804 -6.4902 41 1 3.7300 5.4196 -11.3372 42 1 4.1672 4.2642 -7.9946 43 1 3.0079 3.7181 -9.2317 44 1 3.3571 2.0306 -7.3939 45 1 1.6670 2.5729 -7.5307 46 1 1.9224 2.6546 3.0899 47 1 1.3535 1.0486 2.5747 48 1 4.2717 1.8883 2.8841 49 1 3.3614 0.8605 4.0172 50 1 3.7028 0.2824 2.3689 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001824399.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:58 Heat of formation + Delta-G solvation = 58.712174 kcal Electronic energy + Delta-G solvation = -29099.077665 eV Core-core repulsion = 25163.295728 eV Total energy + Delta-G solvation = -3935.781937 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.55006 -39.45564 -37.72520 -36.17935 -34.97094 -34.14015 -32.81392 -31.06239 -30.72286 -30.10561 -29.57854 -26.92926 -25.24539 -24.38754 -23.91742 -23.09961 -22.12837 -21.11938 -20.66102 -20.40882 -19.08297 -18.07241 -16.71171 -16.56466 -16.36838 -15.80970 -15.14656 -15.08129 -14.96367 -14.76785 -14.31580 -14.03152 -13.89163 -13.65058 -13.45892 -13.29651 -13.10691 -13.04844 -12.81760 -12.67133 -12.31031 -12.27070 -12.19629 -11.82530 -11.77842 -11.63866 -11.27518 -11.18687 -10.94109 -10.67358 -10.52734 -10.44293 -10.22615 -10.16729 -10.08137 -9.83827 -9.48962 -9.40993 -9.38926 -8.88991 -8.41550 -6.61008 -5.73905 -3.15967 0.86563 1.56360 1.69922 3.19887 3.24507 3.41962 3.47439 3.49032 3.85420 3.92132 4.23824 4.25113 4.45321 4.52546 4.54274 4.70379 4.82749 4.90312 4.99309 5.09448 5.18305 5.25485 5.30113 5.40408 5.44537 5.46147 5.47314 5.55792 5.66458 5.74305 5.83655 5.93347 5.99847 6.11761 6.12279 6.21157 6.39686 6.49408 6.55244 6.66671 6.75279 6.83812 6.88649 7.05929 7.41861 7.49267 7.71304 7.79083 7.84243 8.20021 8.50768 9.26965 9.90632 10.47735 11.34625 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.027711 B = 0.002067 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.196577 B =13545.271131 C =13887.512373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.065 4.065 3 C 0.126 3.874 4 C -0.103 4.103 5 C 0.602 3.398 6 O -0.541 6.541 7 N -0.708 5.708 8 C 0.124 3.876 9 C -0.091 4.091 10 C -0.128 4.128 11 C 0.145 3.855 12 N -0.592 5.592 13 C -0.251 4.251 14 H 0.064 0.936 15 C 0.001 3.999 16 N -0.904 5.904 17 Si 0.902 3.098 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.284 1.284 21 C 0.172 3.828 22 C -0.132 4.132 23 N -0.202 5.202 24 N -0.068 5.068 25 N -0.361 5.361 26 C 0.115 3.885 27 C -0.172 4.172 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.049 0.951 31 H 0.118 0.882 32 H 0.077 0.923 33 H 0.408 0.592 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.017 0.983 40 H 0.052 0.948 41 H 0.254 0.746 42 H 0.017 0.983 43 H 0.087 0.913 44 H 0.051 0.949 45 H 0.057 0.943 46 H 0.107 0.893 47 H 0.101 0.899 48 H 0.070 0.930 49 H 0.085 0.915 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.198 -12.567 27.732 30.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 C -0.012 4.012 4 C -0.242 4.242 5 C 0.386 3.614 6 O -0.418 6.418 7 N -0.358 5.358 8 C 0.002 3.998 9 C -0.110 4.110 10 C -0.167 4.167 11 C 0.019 3.981 12 N -0.315 5.315 13 C -0.380 4.380 14 H 0.082 0.918 15 C -0.198 4.198 16 N -0.548 5.548 17 Si 0.732 3.268 18 H -0.209 1.209 19 H -0.217 1.217 20 H -0.211 1.211 21 C 0.046 3.954 22 C -0.172 4.172 23 N -0.075 5.075 24 N -0.047 5.047 25 N -0.147 5.147 26 C -0.005 4.005 27 C -0.230 4.230 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.136 0.864 32 H 0.096 0.904 33 H 0.244 0.756 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.035 0.965 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.035 0.965 43 H 0.106 0.894 44 H 0.069 0.931 45 H 0.076 0.924 46 H 0.125 0.875 47 H 0.120 0.880 48 H 0.089 0.911 49 H 0.103 0.897 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.890 -11.932 27.780 30.293 hybrid contribution -0.607 -0.179 -0.669 0.921 sum -2.497 -12.111 27.110 29.798 Atomic orbital electron populations 1.21671 0.93033 1.02915 1.02396 1.20492 0.97347 0.87266 1.05372 1.21943 0.96637 0.96225 0.86361 1.21281 1.15043 0.92335 0.95556 1.16717 0.77610 0.84651 0.82465 1.90752 1.47579 1.19877 1.83628 1.45903 1.66353 1.17273 1.06276 1.21638 1.01765 0.97913 0.78534 1.21318 0.99704 0.94328 0.95611 1.22074 0.98963 0.96997 0.98657 1.20891 0.97750 0.93552 0.85928 1.44043 1.55716 1.29863 1.01903 1.19145 1.01845 1.29722 0.87333 0.91829 1.25045 0.95294 1.00926 0.98495 1.70026 1.11896 1.52544 1.20359 0.86373 0.79999 0.78351 0.82062 1.20937 1.21682 1.21068 1.20755 0.92074 0.84221 0.98362 1.22176 1.01286 0.99807 0.93916 1.74626 1.10695 1.18002 1.04163 1.81992 1.20250 0.99016 1.03409 1.50496 1.45625 1.11106 1.07476 1.22001 1.00161 1.02152 0.76230 1.22199 0.96548 1.01813 1.02422 0.91380 0.91024 0.93207 0.86423 0.90405 0.75585 0.91549 0.91358 0.91205 0.92204 0.93286 0.96531 0.92906 0.93637 0.96464 0.89437 0.93071 0.92392 0.87471 0.88037 0.91132 0.89662 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.89 37.16 0.37 -0.61 16 2 C -0.07 -0.49 5.43 -27.89 -0.15 -0.64 16 3 C 0.13 1.28 6.27 -81.88 -0.51 0.77 16 4 C -0.10 -1.33 6.99 -83.55 -0.58 -1.92 16 5 C 0.60 8.56 7.82 -12.48 -0.10 8.46 16 6 O -0.54 -8.42 14.72 5.28 0.08 -8.35 16 7 N -0.71 -9.81 5.27 -61.36 -0.32 -10.13 16 8 C 0.12 1.82 5.06 -4.05 -0.02 1.80 16 9 C -0.09 -1.48 2.19 -90.58 -0.20 -1.68 16 10 C -0.13 -2.21 5.25 -26.61 -0.14 -2.35 16 11 C 0.15 3.07 6.52 -3.71 -0.02 3.05 16 12 N -0.59 -14.95 2.99 -172.32 -0.52 -15.47 16 13 C -0.25 -6.96 9.58 -15.06 -0.14 -7.10 16 14 H 0.06 1.74 7.89 -52.48 -0.41 1.32 16 15 C 0.00 0.02 4.92 -17.43 -0.09 -0.06 16 16 N -0.90 -26.45 11.19 55.49 0.62 -25.83 16 17 Si 0.90 21.94 29.59 -169.99 -5.03 16.91 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 C 0.17 4.09 5.30 -3.71 -0.02 4.07 16 22 C -0.13 -2.48 5.36 -26.61 -0.14 -2.62 16 23 N -0.20 -2.77 12.04 32.85 0.40 -2.37 16 24 N -0.07 -0.84 13.78 60.35 0.83 0.00 16 25 N -0.36 -3.28 3.63 -56.85 -0.21 -3.48 16 26 C 0.12 0.51 6.87 -4.04 -0.03 0.48 16 27 C -0.17 -0.60 10.24 37.16 0.38 -0.22 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.12 1.09 6.43 -51.93 -0.33 0.76 16 32 H 0.08 0.36 7.83 -51.93 -0.41 -0.05 16 33 H 0.41 5.43 7.34 -40.82 -0.30 5.13 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.74 7.15 -51.93 -0.37 0.37 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.05 1.11 7.93 -51.93 -0.41 0.69 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 2.34 6.06 -51.93 -0.31 2.02 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 46 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.10 0.22 7.76 -51.93 -0.40 -0.18 16 48 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 50 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 401.05 15.07 6.04 6.04 Total: -1.00 -32.91 401.05 -7.94 -40.85 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -8.43 Total: 0.42 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -1.40 Total: 1.41 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: 0.80 Total: -57.29 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.08 Total: -8.35 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.91 -7.94 -40.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001824399.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.563 kcal (2) G-P(sol) polarization free energy of solvation -32.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds