Wall clock time and date at job start Tue Mar 31 2020 20:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50694 * 109.47347 * 2 1 4 4 C 1.36600 * 126.58128 * 269.97134 * 3 2 1 5 5 C 1.47524 * 125.76836 * 0.04103 * 4 3 2 6 6 O 1.21592 * 119.99850 * 0.02562 * 5 4 3 7 7 N 1.34775 * 120.00128 * 179.97438 * 5 4 3 8 8 C 1.46500 * 120.00202 * 180.02562 * 7 5 4 9 9 C 1.52993 * 109.47224 * 180.02562 * 8 7 5 10 10 C 1.53041 * 109.45914 * 295.02459 * 9 8 7 11 11 C 1.53192 * 109.31126 * 178.60117 * 10 9 8 12 12 N 1.46923 * 108.76489 * 54.65990 * 11 10 9 13 13 C 1.36936 * 120.62953 * 126.36296 * 12 11 10 14 14 H 1.08003 * 120.00421 * 331.85243 * 13 12 11 15 15 C 1.38818 * 119.99990 * 151.85754 * 13 12 11 16 16 N 1.31623 * 119.99607 * 343.07058 * 15 13 12 17 17 Si 1.86793 * 119.99987 * 163.06985 * 15 13 12 18 18 H 1.48499 * 109.47384 * 60.00078 * 17 15 13 19 19 H 1.48501 * 109.47347 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47413 * 300.00190 * 17 15 13 21 21 C 1.46921 * 118.73975 * 306.37753 * 12 11 10 22 22 C 1.53046 * 109.46121 * 174.97222 * 9 8 7 23 23 N 1.34398 * 108.45967 * 180.02562 * 4 3 2 24 24 N 1.28760 * 109.52497 * 359.75299 * 23 4 3 25 25 N 1.34817 * 126.58305 * 89.99732 * 3 2 1 26 26 C 1.46503 * 126.59478 * 359.94052 * 25 3 2 27 27 C 1.53003 * 109.46922 * 90.00140 * 26 25 3 28 28 H 1.09003 * 109.46679 * 59.99952 * 1 2 3 29 29 H 1.08999 * 109.47182 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47419 * 300.00194 * 1 2 3 31 31 H 1.08992 * 109.47558 * 239.99493 * 2 1 3 32 32 H 1.09004 * 109.47158 * 119.99833 * 2 1 3 33 33 H 0.97001 * 120.00083 * 0.02562 * 7 5 4 34 34 H 1.09001 * 109.47179 * 300.00401 * 8 7 5 35 35 H 1.09002 * 109.46767 * 59.99970 * 8 7 5 36 36 H 1.08999 * 109.46019 * 55.00047 * 9 8 7 37 37 H 1.09001 * 109.50027 * 298.56732 * 10 9 8 38 38 H 1.08999 * 109.49331 * 58.66880 * 10 9 8 39 39 H 1.09002 * 109.60142 * 294.86935 * 11 10 9 40 40 H 1.09001 * 109.69873 * 174.51140 * 11 10 9 41 41 H 0.96998 * 119.99365 * 179.97438 * 16 15 13 42 42 H 1.09001 * 109.59219 * 293.82850 * 21 12 11 43 43 H 1.08993 * 109.70749 * 173.46652 * 21 12 11 44 44 H 1.08992 * 109.49773 * 301.33737 * 22 9 8 45 45 H 1.09004 * 109.49152 * 61.39742 * 22 9 8 46 46 H 1.09000 * 109.47245 * 210.00254 * 26 25 3 47 47 H 1.08996 * 109.46894 * 330.00348 * 26 25 3 48 48 H 1.08997 * 109.46952 * 59.99871 * 27 26 25 49 49 H 1.08997 * 109.47085 * 180.02562 * 27 26 25 50 50 H 1.09005 * 109.46974 * 300.00489 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3042 2.1881 -1.0969 5 6 2.1550 1.7664 -2.5027 6 8 1.7579 0.6469 -2.7627 7 7 2.4577 2.6223 -3.4988 8 6 2.3090 2.2038 -4.8948 9 6 2.7165 3.3536 -5.8182 10 6 1.7432 4.5209 -5.6388 11 6 2.1746 5.6831 -6.5389 12 7 2.2836 5.1955 -7.9206 13 6 1.6152 5.8242 -8.9371 14 1 0.6944 6.3508 -8.7335 15 6 2.1210 5.7846 -10.2292 16 7 3.3767 5.4476 -10.4343 17 14 1.0196 6.2096 -11.6767 18 1 0.5222 7.6010 -11.5287 19 1 1.7932 6.0917 -12.9388 20 1 -0.1327 5.2735 -11.7137 21 6 3.1230 4.0204 -8.1909 22 6 2.6813 2.8770 -7.2721 23 7 2.7304 3.3922 -0.6789 24 7 2.7357 3.4238 0.6083 25 7 2.3001 2.1783 1.0826 26 6 2.1576 1.7790 2.4849 27 6 3.4676 1.1580 2.9740 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8898 32 1 1.8933 -0.5138 0.8900 33 1 2.7741 3.5155 -3.2914 34 1 2.9475 1.3413 -5.0856 35 1 1.2697 1.9355 -5.0849 36 1 3.7257 3.6804 -5.5675 37 1 0.7377 4.2018 -5.9133 38 1 1.7513 4.8447 -4.5981 39 1 3.1413 6.0626 -6.2080 40 1 1.4330 6.4804 -6.4902 41 1 3.7300 5.4196 -11.3372 42 1 4.1672 4.2642 -7.9946 43 1 3.0079 3.7181 -9.2317 44 1 3.3571 2.0306 -7.3939 45 1 1.6670 2.5729 -7.5307 46 1 1.9224 2.6546 3.0899 47 1 1.3535 1.0486 2.5747 48 1 4.2717 1.8883 2.8841 49 1 3.3614 0.8605 4.0172 50 1 3.7028 0.2824 2.3689 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001824399.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:57 Heat of formation + Delta-G solvation = 37.152508 kcal Electronic energy + Delta-G solvation = -29100.012563 eV Core-core repulsion = 25163.295728 eV Total energy + Delta-G solvation = -3936.716835 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.37033 -40.60619 -39.27801 -36.85272 -36.36984 -34.80154 -34.44479 -32.60679 -31.54692 -31.35483 -30.88114 -28.44544 -26.21386 -25.54335 -24.80097 -24.12183 -23.70950 -22.59309 -21.53111 -21.33912 -20.67504 -19.06778 -18.57527 -17.37765 -17.16034 -16.91069 -16.77817 -16.17538 -15.75867 -15.69965 -15.56946 -15.29480 -15.03450 -14.90637 -14.78053 -14.71548 -14.03712 -13.93829 -13.82491 -13.75788 -13.38677 -13.36404 -13.15061 -12.98557 -12.80050 -12.70419 -12.54037 -12.31819 -12.27075 -12.24037 -12.01496 -11.85044 -11.82843 -11.61317 -11.29739 -11.20211 -11.10728 -11.01114 -10.51540 -10.34483 -9.97645 -8.65654 -7.85848 -5.31019 0.09396 0.59171 1.07222 1.47050 1.49607 1.56371 2.14364 2.21643 2.52526 3.12785 3.28150 3.38080 3.51805 3.69736 3.72072 3.85449 3.95024 3.95350 4.09283 4.14794 4.27410 4.27992 4.40521 4.51724 4.53471 4.55252 4.62684 4.69759 4.74953 4.76151 4.83208 4.91833 4.95161 4.95774 5.01992 5.12536 5.17090 5.17946 5.29104 5.29921 5.31264 5.37356 5.44912 5.52437 5.56054 5.67075 5.80456 6.40942 6.42197 6.88459 7.12867 7.17054 7.88945 8.40464 9.20254 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.027711 B = 0.002067 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.196577 B =13545.271131 C =13887.512373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.062 4.062 3 C 0.137 3.863 4 C -0.130 4.130 5 C 0.602 3.398 6 O -0.558 6.558 7 N -0.707 5.707 8 C 0.138 3.862 9 C -0.080 4.080 10 C -0.114 4.114 11 C 0.140 3.860 12 N -0.611 5.611 13 C -0.263 4.263 14 H 0.064 0.936 15 C -0.052 4.052 16 N -0.935 5.935 17 Si 0.967 3.033 18 H -0.276 1.276 19 H -0.293 1.293 20 H -0.278 1.278 21 C 0.177 3.823 22 C -0.120 4.120 23 N -0.225 5.225 24 N -0.091 5.091 25 N -0.347 5.347 26 C 0.102 3.898 27 C -0.167 4.167 28 H 0.037 0.963 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.115 0.885 33 H 0.411 0.589 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.014 0.986 40 H 0.050 0.950 41 H 0.250 0.750 42 H -0.003 1.003 43 H 0.053 0.947 44 H 0.072 0.928 45 H 0.053 0.947 46 H 0.118 0.882 47 H 0.133 0.867 48 H 0.050 0.950 49 H 0.113 0.887 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.341 -14.051 30.519 33.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.102 4.102 3 C -0.003 4.003 4 C -0.270 4.270 5 C 0.387 3.613 6 O -0.437 6.437 7 N -0.357 5.357 8 C 0.015 3.985 9 C -0.099 4.099 10 C -0.153 4.153 11 C 0.015 3.985 12 N -0.335 5.335 13 C -0.393 4.393 14 H 0.082 0.918 15 C -0.248 4.248 16 N -0.581 5.581 17 Si 0.795 3.205 18 H -0.202 1.202 19 H -0.220 1.220 20 H -0.205 1.205 21 C 0.051 3.949 22 C -0.159 4.159 23 N -0.098 5.098 24 N -0.070 5.070 25 N -0.133 5.133 26 C -0.017 4.017 27 C -0.225 4.225 28 H 0.057 0.943 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.118 0.882 32 H 0.133 0.867 33 H 0.248 0.752 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.032 0.968 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.015 0.985 43 H 0.072 0.928 44 H 0.091 0.909 45 H 0.072 0.928 46 H 0.137 0.863 47 H 0.151 0.849 48 H 0.069 0.931 49 H 0.132 0.868 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.038 -13.401 30.626 33.567 hybrid contribution -0.236 0.278 -1.397 1.444 sum -3.275 -13.123 29.229 32.207 Atomic orbital electron populations 1.21658 0.92377 1.03886 1.01766 1.20595 0.97713 0.85559 1.06308 1.22315 0.95153 0.96969 0.85849 1.21281 1.17040 0.93079 0.95591 1.16881 0.77045 0.84333 0.83040 1.90737 1.48380 1.20493 1.84048 1.45831 1.66499 1.17481 1.05905 1.21369 1.01569 0.96945 0.78614 1.21154 0.99660 0.94613 0.94429 1.21908 0.98596 0.95717 0.99079 1.21048 0.97662 0.95113 0.84687 1.44325 1.55668 1.30502 1.03011 1.19469 1.02019 1.29433 0.88395 0.91844 1.25808 0.96498 1.01534 1.00923 1.70181 1.13452 1.54017 1.20434 0.85347 0.78194 0.78331 0.78612 1.20178 1.21961 1.20459 1.20581 0.91021 0.85580 0.97717 1.21966 1.01291 0.98366 0.94313 1.74585 1.11581 1.18725 1.04917 1.81887 1.21172 1.00870 1.03034 1.50826 1.43762 1.09803 1.08900 1.22555 1.01755 1.03616 0.73744 1.22196 0.95260 1.00991 1.04091 0.94325 0.89272 0.91493 0.88222 0.86700 0.75234 0.91018 0.91681 0.90973 0.92757 0.90649 0.96762 0.93114 0.94114 0.98535 0.92834 0.90927 0.92771 0.86348 0.84879 0.93097 0.86839 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.89 71.98 0.71 -0.86 16 2 C -0.06 -0.78 5.43 29.84 0.16 -0.62 16 3 C 0.14 2.54 6.27 41.72 0.26 2.80 16 4 C -0.13 -3.28 6.99 40.82 0.29 -2.99 16 5 C 0.60 16.74 7.82 86.69 0.68 17.42 16 6 O -0.56 -17.01 14.72 -4.01 -0.06 -17.07 16 7 N -0.71 -18.91 5.27 -466.29 -2.46 -21.37 16 8 C 0.14 3.85 5.06 86.38 0.44 4.29 16 9 C -0.08 -2.53 2.19 -10.77 -0.02 -2.55 16 10 C -0.11 -3.83 5.25 30.67 0.16 -3.67 16 11 C 0.14 5.94 6.52 86.36 0.56 6.51 16 12 N -0.61 -31.44 2.99 -699.11 -2.09 -33.53 16 13 C -0.26 -14.83 9.58 84.04 0.81 -14.03 16 14 H 0.06 3.50 7.89 -2.91 -0.02 3.48 16 15 C -0.05 -2.99 4.92 84.86 0.42 -2.57 16 16 N -0.93 -56.33 11.19 21.65 0.24 -56.08 16 17 Si 0.97 45.80 29.59 68.60 2.03 47.83 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 19 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 C 0.18 8.64 5.30 86.36 0.46 9.10 16 22 C -0.12 -4.46 5.36 30.67 0.16 -4.29 16 23 N -0.23 -6.10 12.04 -49.99 -0.60 -6.70 16 24 N -0.09 -2.17 13.78 37.02 0.51 -1.66 16 25 N -0.35 -5.60 3.63 -333.77 -1.21 -6.82 16 26 C 0.10 0.56 6.87 86.38 0.59 1.15 16 27 C -0.17 -0.67 10.24 71.98 0.74 0.07 16 28 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.10 1.70 6.43 -2.39 -0.02 1.68 16 32 H 0.11 0.58 7.83 -2.38 -0.02 0.56 16 33 H 0.41 10.55 7.34 -92.71 -0.68 9.87 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.08 2.16 7.15 -2.39 -0.02 2.14 16 39 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.05 2.13 7.93 -2.39 -0.02 2.11 16 41 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 42 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 43 H 0.05 2.97 6.06 -2.39 -0.01 2.95 16 44 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 46 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.13 -0.06 7.76 -2.39 -0.02 -0.07 16 48 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 49 H 0.11 -0.15 8.14 -2.39 -0.02 -0.17 16 50 H 0.06 0.30 8.14 -2.38 -0.02 0.28 16 Total: -1.00 -73.83 401.05 3.02 -70.80 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.25 Total: 14.85 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 6.41 Total: 9.75 kcal Atomic # 7 Polarization: -120.55 SS G_CDS: -5.61 Total: -126.16 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.06 Total: -17.07 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -73.83 3.02 -70.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001824399.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.954 kcal (2) G-P(sol) polarization free energy of solvation -73.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds