Wall clock time and date at job start Tue Mar 31 2020 20:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47159 * 2 1 4 4 C 1.52998 * 109.47306 * 120.00201 * 2 1 3 5 5 C 1.53001 * 109.47107 * 174.99882 * 4 2 1 6 6 N 1.46500 * 109.47169 * 179.97438 * 5 4 2 7 7 C 1.34811 * 126.59181 * 125.26927 * 6 5 4 8 8 C 1.36600 * 106.84184 * 180.15616 * 7 6 5 9 9 C 1.47518 * 125.77403 * 179.90056 * 8 7 6 10 10 O 1.21593 * 120.00306 * 359.71481 * 9 8 7 11 11 N 1.34773 * 120.00133 * 179.71359 * 9 8 7 12 12 C 1.46498 * 120.00285 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.50124 * 35.06511 * 12 11 9 14 14 C 1.53037 * 109.52906 * 155.11402 * 12 11 9 15 15 C 1.53038 * 109.54214 * 181.29681 * 14 12 11 16 16 C 1.53191 * 109.34152 * 298.68565 * 15 14 12 17 17 N 1.46925 * 108.77463 * 54.61574 * 16 15 14 18 18 C 1.36934 * 120.62881 * 126.41501 * 17 16 15 19 19 H 1.07999 * 120.00238 * 207.67150 * 18 17 16 20 20 C 1.38813 * 120.00212 * 27.66499 * 18 17 16 21 21 N 1.31618 * 119.99784 * 17.37115 * 20 18 17 22 22 Si 1.86798 * 120.00239 * 197.36648 * 20 18 17 23 23 H 1.48495 * 109.47216 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46727 * 120.00490 * 22 20 18 25 25 H 1.48501 * 109.46989 * 240.00226 * 22 20 18 26 26 C 1.46925 * 118.73947 * 306.39535 * 17 16 15 27 27 N 1.34406 * 108.45336 * 359.63616 * 8 7 6 28 28 N 1.28760 * 109.52423 * 0.22902 * 27 8 7 29 29 H 1.08999 * 109.47099 * 299.99718 * 1 2 3 30 30 H 1.08997 * 109.47171 * 59.99775 * 1 2 3 31 31 H 1.08998 * 109.47177 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47099 * 240.00282 * 2 1 3 33 33 H 1.09000 * 109.47161 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47022 * 300.00648 * 3 2 1 35 35 H 1.08999 * 109.46885 * 60.00151 * 3 2 1 36 36 H 1.09004 * 109.47102 * 54.99935 * 4 2 1 37 37 H 1.08997 * 109.47141 * 294.99952 * 4 2 1 38 38 H 1.09004 * 109.47096 * 60.00050 * 5 4 2 39 39 H 1.08997 * 109.47177 * 300.00047 * 5 4 2 40 40 H 1.08005 * 126.58565 * 0.02562 * 7 6 5 41 41 H 0.97008 * 119.99926 * 0.02562 * 11 9 8 42 42 H 1.09002 * 109.43391 * 61.29419 * 14 12 11 43 43 H 1.08999 * 109.48608 * 301.33963 * 14 12 11 44 44 H 1.08999 * 109.49614 * 178.70829 * 15 14 12 45 45 H 1.09006 * 109.49634 * 58.65457 * 15 14 12 46 46 H 1.08996 * 109.58281 * 174.40715 * 16 15 14 47 47 H 1.09004 * 109.58459 * 294.68493 * 16 15 14 48 48 H 0.97006 * 120.00403 * 179.97438 * 21 20 18 49 49 H 1.08997 * 109.58320 * 173.39910 * 26 17 16 50 50 H 1.09007 * 109.58169 * 293.81941 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1878 6 7 4.0533 -1.5212 2.3843 7 6 4.8356 -2.6186 2.4159 8 6 5.0420 -2.9197 3.7322 9 6 5.8415 -4.0491 4.2434 10 8 6.3818 -4.8125 3.4664 11 7 5.9730 -4.2349 5.5718 12 6 6.7675 -5.3562 6.0795 13 1 7.6150 -5.5312 5.4168 14 6 7.2779 -5.0269 7.4842 15 6 8.1346 -6.1845 8.0019 16 6 7.2788 -7.4525 8.0827 17 7 6.6674 -7.6949 6.7689 18 6 6.8134 -8.9045 6.1440 19 1 6.7788 -8.9632 5.0661 20 6 7.0058 -10.0555 6.8958 21 7 6.7135 -10.0597 8.1791 22 14 7.6794 -11.5982 6.0862 23 1 7.9259 -11.3342 4.6459 24 1 8.9536 -11.9859 6.7432 25 1 6.6947 -12.7010 6.2264 26 6 5.8962 -6.6148 6.1385 27 7 4.3982 -2.0095 4.4829 28 7 3.8008 -1.1646 3.7165 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6054 -1.7199 1.2951 37 1 1.7517 -0.1584 2.1369 38 1 3.9995 0.1675 1.1419 39 1 3.8532 -1.3940 0.3001 40 1 5.2230 -3.1578 1.5640 41 1 5.5417 -3.6262 6.1918 42 1 6.4299 -4.8758 8.1520 43 1 7.8785 -4.1180 7.4490 44 1 8.5166 -5.9395 8.9930 45 1 8.9696 -6.3519 7.3215 46 1 7.9070 -8.3004 8.3556 47 1 6.4986 -7.3196 8.8323 48 1 6.8476 -10.8640 8.7045 49 1 5.6120 -6.9103 5.1286 50 1 5.0016 -6.4127 6.7277 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008511872.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:25 Heat of formation + Delta-G solvation = 61.071937 kcal Electronic energy + Delta-G solvation = -28528.801470 eV Core-core repulsion = 24593.121859 eV Total energy + Delta-G solvation = -3935.679610 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 7.01 seconds Orbital eigenvalues (eV) -42.33866 -39.35562 -37.74498 -37.20570 -34.62785 -34.17843 -32.35583 -31.19949 -30.40478 -29.92558 -28.39648 -27.73967 -25.22572 -25.02325 -23.90597 -22.07091 -22.05026 -21.68492 -20.62743 -20.01897 -19.35675 -17.99878 -16.72541 -16.62261 -16.29300 -15.72274 -15.59161 -14.95380 -14.78680 -14.57694 -14.55332 -14.31434 -13.93874 -13.77506 -13.51123 -13.29466 -13.04106 -12.85852 -12.61132 -12.36106 -12.32581 -12.30794 -12.04215 -11.76793 -11.65748 -11.40313 -11.35421 -11.18906 -11.04843 -10.84936 -10.75050 -10.48443 -10.19437 -10.16324 -10.03704 -9.84836 -9.58283 -9.54762 -9.39236 -8.74670 -8.34528 -6.61601 -5.73085 -3.14759 0.98863 1.69769 1.78786 3.35117 3.42408 3.46733 3.50159 3.54258 3.87040 4.09801 4.13615 4.30360 4.36147 4.55767 4.60834 4.67403 4.73420 4.86677 5.01603 5.04725 5.10807 5.25232 5.31734 5.35827 5.38992 5.39688 5.44480 5.58999 5.62128 5.67359 5.71738 5.72279 5.79475 5.82035 6.14694 6.15017 6.23045 6.32974 6.60140 6.67688 6.73803 6.76635 6.90808 7.06302 7.42158 7.67583 7.71075 7.88539 7.93076 8.43579 8.52433 9.27632 9.90205 10.46138 11.35639 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020166 B = 0.002019 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.169480 B =13864.669365 C =14640.708806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.154 4.154 4 C -0.130 4.130 5 C 0.120 3.880 6 N -0.362 5.362 7 C 0.090 3.910 8 C -0.095 4.095 9 C 0.599 3.401 10 O -0.536 6.536 11 N -0.705 5.705 12 C 0.126 3.874 13 H 0.088 0.912 14 C -0.115 4.115 15 C -0.139 4.139 16 C 0.167 3.833 17 N -0.588 5.588 18 C -0.247 4.247 19 H 0.067 0.933 20 C 0.000 4.000 21 N -0.904 5.904 22 Si 0.902 3.098 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.291 1.291 26 C 0.142 3.858 27 N -0.206 5.206 28 N -0.067 5.067 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.204 0.796 41 H 0.403 0.597 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.089 0.911 47 H 0.019 0.981 48 H 0.252 0.748 49 H 0.058 0.942 50 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.904 23.618 -14.719 28.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.211 4.211 4 C -0.168 4.168 5 C -0.001 4.001 6 N -0.147 5.147 7 C -0.067 4.067 8 C -0.234 4.234 9 C 0.382 3.618 10 O -0.412 6.412 11 N -0.355 5.355 12 C 0.021 3.979 13 H 0.106 0.894 14 C -0.153 4.153 15 C -0.179 4.179 16 C 0.041 3.959 17 N -0.310 5.310 18 C -0.377 4.377 19 H 0.085 0.915 20 C -0.198 4.198 21 N -0.549 5.549 22 Si 0.732 3.268 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.014 3.986 27 N -0.079 5.079 28 N -0.047 5.047 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.117 0.883 39 H 0.123 0.877 40 H 0.221 0.779 41 H 0.237 0.763 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.107 0.893 47 H 0.037 0.963 48 H 0.062 0.938 49 H 0.077 0.923 50 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -8.207 23.907 -14.268 29.026 hybrid contribution 0.499 -1.101 -0.819 1.460 sum -7.708 22.806 -15.087 28.411 Atomic orbital electron populations 1.21825 0.94447 1.02126 1.02156 1.21064 0.96521 0.96373 0.97245 1.21956 1.01003 0.95779 1.02373 1.21985 0.92419 1.02435 0.99970 1.22185 0.96535 0.98528 0.82855 1.50531 1.34804 1.20480 1.08924 1.23406 0.93756 0.89296 1.00207 1.21639 1.09314 1.01940 0.90528 1.16748 0.79680 0.82302 0.83034 1.90837 1.48186 1.45613 1.56537 1.45941 1.52419 1.31013 1.06088 1.21795 0.94947 0.86101 0.95030 0.89427 1.21680 0.99796 0.98528 0.95342 1.22176 0.99123 0.97125 0.99450 1.20842 0.94485 0.94127 0.86436 1.44010 1.57692 1.09986 1.19357 1.19270 1.43963 0.83634 0.90840 0.91486 1.25025 1.01206 0.97403 0.96154 1.70054 1.50383 1.27909 1.06528 0.86218 0.78478 0.83140 0.78968 1.20177 1.21580 1.21808 1.21195 0.92238 0.87629 0.97535 1.74637 1.05515 1.01055 1.26723 1.81939 1.20936 1.19156 0.82685 0.92379 0.92335 0.92461 0.90736 0.92523 0.92336 0.92216 0.90818 0.89862 0.88254 0.87747 0.77916 0.76288 0.92107 0.92982 0.92701 0.92415 0.89272 0.96282 0.93761 0.92330 0.96352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.19 37.16 0.34 -0.27 16 2 C -0.09 -0.35 2.92 -90.62 -0.26 -0.61 16 3 C -0.15 -0.53 8.95 37.16 0.33 -0.20 16 4 C -0.13 -0.66 4.89 -26.73 -0.13 -0.79 16 5 C 0.12 0.60 6.29 -4.04 -0.03 0.57 16 6 N -0.36 -3.35 3.69 -61.06 -0.23 -3.58 16 7 C 0.09 0.94 11.27 -16.84 -0.19 0.75 16 8 C -0.09 -1.31 6.99 -83.55 -0.58 -1.89 16 9 C 0.60 9.92 7.78 -12.48 -0.10 9.83 16 10 O -0.54 -10.47 16.53 5.28 0.09 -10.39 16 11 N -0.71 -11.36 5.08 -54.74 -0.28 -11.64 16 12 C 0.13 2.37 2.60 -67.81 -0.18 2.19 16 13 H 0.09 1.83 7.58 -51.93 -0.39 1.43 16 14 C -0.12 -1.95 5.36 -26.69 -0.14 -2.09 16 15 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 16 C 0.17 4.02 5.31 -3.71 -0.02 4.00 16 17 N -0.59 -15.22 2.99 -172.32 -0.52 -15.74 16 18 C -0.25 -7.04 9.59 -15.06 -0.14 -7.19 16 19 H 0.07 1.92 7.89 -52.49 -0.41 1.50 16 20 C 0.00 0.01 4.91 -17.43 -0.09 -0.08 16 21 N -0.90 -26.63 11.19 55.49 0.62 -26.01 16 22 Si 0.90 22.26 29.59 -169.99 -5.03 17.23 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 26 C 0.14 3.19 6.09 -3.71 -0.02 3.16 16 27 N -0.21 -2.87 12.04 32.85 0.40 -2.48 16 28 N -0.07 -0.83 13.65 60.35 0.82 -0.01 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.16 6.57 -51.93 -0.34 -0.18 16 34 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.10 0.39 6.57 -51.93 -0.34 0.05 16 39 H 0.10 0.27 8.08 -51.93 -0.42 -0.15 16 40 H 0.20 1.54 8.06 -52.48 -0.42 1.12 16 41 H 0.40 5.72 8.29 -40.82 -0.34 5.38 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.09 2.39 6.04 -51.93 -0.31 2.08 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 49 H 0.06 1.40 7.93 -51.93 -0.41 0.98 16 50 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 LS Contribution 403.59 15.07 6.08 6.08 Total: -1.00 -33.75 403.59 -7.86 -41.61 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -8.45 Total: 0.35 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -1.37 Total: 4.56 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: 0.82 Total: -59.45 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.23 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.75 -7.86 -41.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008511872.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.683 kcal (2) G-P(sol) polarization free energy of solvation -33.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.01 seconds