Wall clock time and date at job start Tue Mar 31 2020 20:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47159 * 2 1 4 4 C 1.52998 * 109.47306 * 120.00201 * 2 1 3 5 5 C 1.53001 * 109.47107 * 174.99882 * 4 2 1 6 6 N 1.46500 * 109.47169 * 179.97438 * 5 4 2 7 7 C 1.34811 * 126.59181 * 125.26927 * 6 5 4 8 8 C 1.36600 * 106.84184 * 180.15616 * 7 6 5 9 9 C 1.47518 * 125.77403 * 179.90056 * 8 7 6 10 10 O 1.21593 * 120.00306 * 359.71481 * 9 8 7 11 11 N 1.34773 * 120.00133 * 179.71359 * 9 8 7 12 12 C 1.46498 * 120.00285 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.50124 * 35.06511 * 12 11 9 14 14 C 1.53037 * 109.52906 * 155.11402 * 12 11 9 15 15 C 1.53038 * 109.54214 * 181.29681 * 14 12 11 16 16 C 1.53191 * 109.34152 * 298.68565 * 15 14 12 17 17 N 1.46925 * 108.77463 * 54.61574 * 16 15 14 18 18 C 1.36934 * 120.62881 * 126.41501 * 17 16 15 19 19 H 1.07999 * 120.00238 * 207.67150 * 18 17 16 20 20 C 1.38813 * 120.00212 * 27.66499 * 18 17 16 21 21 N 1.31618 * 119.99784 * 17.37115 * 20 18 17 22 22 Si 1.86798 * 120.00239 * 197.36648 * 20 18 17 23 23 H 1.48495 * 109.47216 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46727 * 120.00490 * 22 20 18 25 25 H 1.48501 * 109.46989 * 240.00226 * 22 20 18 26 26 C 1.46925 * 118.73947 * 306.39535 * 17 16 15 27 27 N 1.34406 * 108.45336 * 359.63616 * 8 7 6 28 28 N 1.28760 * 109.52423 * 0.22902 * 27 8 7 29 29 H 1.08999 * 109.47099 * 299.99718 * 1 2 3 30 30 H 1.08997 * 109.47171 * 59.99775 * 1 2 3 31 31 H 1.08998 * 109.47177 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47099 * 240.00282 * 2 1 3 33 33 H 1.09000 * 109.47161 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47022 * 300.00648 * 3 2 1 35 35 H 1.08999 * 109.46885 * 60.00151 * 3 2 1 36 36 H 1.09004 * 109.47102 * 54.99935 * 4 2 1 37 37 H 1.08997 * 109.47141 * 294.99952 * 4 2 1 38 38 H 1.09004 * 109.47096 * 60.00050 * 5 4 2 39 39 H 1.08997 * 109.47177 * 300.00047 * 5 4 2 40 40 H 1.08005 * 126.58565 * 0.02562 * 7 6 5 41 41 H 0.97008 * 119.99926 * 0.02562 * 11 9 8 42 42 H 1.09002 * 109.43391 * 61.29419 * 14 12 11 43 43 H 1.08999 * 109.48608 * 301.33963 * 14 12 11 44 44 H 1.08999 * 109.49614 * 178.70829 * 15 14 12 45 45 H 1.09006 * 109.49634 * 58.65457 * 15 14 12 46 46 H 1.08996 * 109.58281 * 174.40715 * 16 15 14 47 47 H 1.09004 * 109.58459 * 294.68493 * 16 15 14 48 48 H 0.97006 * 120.00403 * 179.97438 * 21 20 18 49 49 H 1.08997 * 109.58320 * 173.39910 * 26 17 16 50 50 H 1.09007 * 109.58169 * 293.81941 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1878 6 7 4.0533 -1.5212 2.3843 7 6 4.8356 -2.6186 2.4159 8 6 5.0420 -2.9197 3.7322 9 6 5.8415 -4.0491 4.2434 10 8 6.3818 -4.8125 3.4664 11 7 5.9730 -4.2349 5.5718 12 6 6.7675 -5.3562 6.0795 13 1 7.6150 -5.5312 5.4168 14 6 7.2779 -5.0269 7.4842 15 6 8.1346 -6.1845 8.0019 16 6 7.2788 -7.4525 8.0827 17 7 6.6674 -7.6949 6.7689 18 6 6.8134 -8.9045 6.1440 19 1 6.7788 -8.9632 5.0661 20 6 7.0058 -10.0555 6.8958 21 7 6.7135 -10.0597 8.1791 22 14 7.6794 -11.5982 6.0862 23 1 7.9259 -11.3342 4.6459 24 1 8.9536 -11.9859 6.7432 25 1 6.6947 -12.7010 6.2264 26 6 5.8962 -6.6148 6.1385 27 7 4.3982 -2.0095 4.4829 28 7 3.8008 -1.1646 3.7165 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6054 -1.7199 1.2951 37 1 1.7517 -0.1584 2.1369 38 1 3.9995 0.1675 1.1419 39 1 3.8532 -1.3940 0.3001 40 1 5.2230 -3.1578 1.5640 41 1 5.5417 -3.6262 6.1918 42 1 6.4299 -4.8758 8.1520 43 1 7.8785 -4.1180 7.4490 44 1 8.5166 -5.9395 8.9930 45 1 8.9696 -6.3519 7.3215 46 1 7.9070 -8.3004 8.3556 47 1 6.4986 -7.3196 8.8323 48 1 6.8476 -10.8640 8.7045 49 1 5.6120 -6.9103 5.1286 50 1 5.0016 -6.4127 6.7277 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008511872.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:20 Heat of formation + Delta-G solvation = 38.739630 kcal Electronic energy + Delta-G solvation = -28529.769871 eV Core-core repulsion = 24593.121859 eV Total energy + Delta-G solvation = -3936.648012 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 5.11 seconds Orbital eigenvalues (eV) -43.24338 -40.74870 -38.90141 -38.13128 -35.96084 -35.23136 -34.09588 -32.33396 -32.16434 -30.78310 -29.77511 -28.02546 -27.24870 -25.62379 -25.12206 -23.86655 -23.17607 -22.81371 -21.42494 -21.06842 -20.74123 -19.03930 -18.69849 -17.32525 -17.24780 -17.16897 -16.70343 -16.33740 -15.87359 -15.74197 -15.65337 -15.28601 -15.12632 -14.88440 -14.84460 -14.61275 -14.20466 -14.03642 -13.94915 -13.41142 -13.40144 -13.14898 -13.01943 -12.81480 -12.75948 -12.65583 -12.54004 -12.16353 -12.10236 -12.04692 -11.95268 -11.76835 -11.69846 -11.58895 -11.53432 -11.29743 -11.15837 -11.12448 -10.61386 -10.39479 -10.06520 -8.68909 -7.88952 -5.34446 0.14540 0.61658 1.08610 1.45271 1.46727 1.58639 2.09242 2.25508 2.52031 3.16859 3.25146 3.32135 3.70458 3.74785 3.80077 3.89544 3.94876 3.98826 4.02228 4.12218 4.26290 4.27098 4.34598 4.44760 4.48985 4.55360 4.65305 4.74296 4.81281 4.82223 4.90428 4.92638 4.98145 5.03675 5.04828 5.07916 5.13637 5.16224 5.27878 5.30140 5.40780 5.46094 5.46379 5.50999 5.56317 5.64591 5.77579 6.37711 6.46593 6.91031 7.13213 7.18238 7.83145 8.33968 9.17132 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020166 B = 0.002019 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.169480 B =13864.669365 C =14640.708806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 C -0.154 4.154 4 C -0.125 4.125 5 C 0.110 3.890 6 N -0.346 5.346 7 C 0.109 3.891 8 C -0.122 4.122 9 C 0.601 3.399 10 O -0.571 6.571 11 N -0.698 5.698 12 C 0.143 3.857 13 H 0.067 0.933 14 C -0.106 4.106 15 C -0.128 4.128 16 C 0.171 3.829 17 N -0.606 5.606 18 C -0.265 4.265 19 H 0.057 0.943 20 C -0.047 4.047 21 N -0.931 5.931 22 Si 0.967 3.033 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.290 1.290 26 C 0.144 3.856 27 N -0.223 5.223 28 N -0.083 5.083 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.116 0.884 39 H 0.139 0.861 40 H 0.234 0.766 41 H 0.414 0.586 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.051 0.949 46 H 0.057 0.943 47 H 0.003 0.997 48 H 0.252 0.748 49 H 0.035 0.965 50 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.510 25.433 -16.339 31.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.106 4.106 3 C -0.211 4.211 4 C -0.163 4.163 5 C -0.009 4.009 6 N -0.131 5.131 7 C -0.049 4.049 8 C -0.262 4.262 9 C 0.386 3.614 10 O -0.450 6.450 11 N -0.348 5.348 12 C 0.037 3.963 13 H 0.085 0.915 14 C -0.144 4.144 15 C -0.167 4.167 16 C 0.046 3.954 17 N -0.330 5.330 18 C -0.395 4.395 19 H 0.075 0.925 20 C -0.243 4.243 21 N -0.577 5.577 22 Si 0.795 3.205 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.216 1.216 26 C 0.017 3.983 27 N -0.097 5.097 28 N -0.063 5.063 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.134 0.866 39 H 0.157 0.843 40 H 0.251 0.749 41 H 0.251 0.749 42 H 0.090 0.910 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.021 0.979 48 H 0.061 0.939 49 H 0.054 0.946 50 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -7.845 25.795 -15.889 31.295 hybrid contribution 0.256 -1.597 -0.410 1.668 sum -7.589 24.198 -16.298 30.146 Atomic orbital electron populations 1.21849 0.95002 1.01840 1.02119 1.21031 0.96018 0.96556 0.96954 1.21963 1.01606 0.95407 1.02171 1.21919 0.92586 1.01764 1.00048 1.22681 0.96299 0.99725 0.82180 1.50809 1.33479 1.19817 1.08988 1.23823 0.92405 0.88871 0.99820 1.21360 1.10820 1.02034 0.91947 1.17079 0.79156 0.82506 0.82663 1.90813 1.49751 1.47131 1.57263 1.45767 1.52235 1.30319 1.06503 1.21333 0.93538 0.85307 0.96114 0.91467 1.21622 1.00273 0.98789 0.93743 1.22009 0.98207 0.95306 1.01223 1.20724 0.94034 0.95475 0.85207 1.44239 1.58641 1.10134 1.19967 1.19462 1.44191 0.85136 0.90699 0.92536 1.25762 1.01577 1.00187 0.96770 1.70188 1.51233 1.28586 1.07668 0.85211 0.77688 0.79336 0.78243 1.19600 1.21062 1.21640 1.21214 0.92713 0.88578 0.95750 1.74607 1.06025 1.01435 1.27638 1.81865 1.21146 1.19173 0.84130 0.93162 0.91671 0.92880 0.89241 0.91553 0.91880 0.93139 0.91794 0.91590 0.86587 0.84315 0.74944 0.74926 0.91011 0.89559 0.89734 0.92973 0.92507 0.97918 0.93911 0.94647 0.96582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.19 71.98 0.66 -0.41 16 2 C -0.09 -0.46 2.92 -10.79 -0.03 -0.49 16 3 C -0.15 -0.73 8.95 71.98 0.64 -0.09 16 4 C -0.12 -1.05 4.89 30.59 0.15 -0.90 16 5 C 0.11 0.76 6.29 86.38 0.54 1.30 16 6 N -0.35 -5.61 3.69 -347.09 -1.28 -6.89 16 7 C 0.11 2.03 11.27 83.85 0.95 2.98 16 8 C -0.12 -3.23 6.99 40.81 0.29 -2.95 16 9 C 0.60 19.70 7.78 86.69 0.67 20.37 16 10 O -0.57 -22.41 16.53 -4.01 -0.07 -22.47 16 11 N -0.70 -22.08 5.08 -445.36 -2.26 -24.35 16 12 C 0.14 5.32 2.60 45.07 0.12 5.44 16 13 H 0.07 2.82 7.58 -2.39 -0.02 2.80 16 14 C -0.11 -3.39 5.36 30.62 0.16 -3.22 16 15 C -0.13 -4.74 6.08 30.67 0.19 -4.55 16 16 C 0.17 8.37 5.31 86.36 0.46 8.83 16 17 N -0.61 -32.27 2.99 -699.10 -2.09 -34.36 16 18 C -0.26 -15.51 9.59 84.03 0.81 -14.70 16 19 H 0.06 3.35 7.89 -2.91 -0.02 3.33 16 20 C -0.05 -2.75 4.91 84.86 0.42 -2.33 16 21 N -0.93 -56.13 11.19 21.65 0.24 -55.89 16 22 Si 0.97 46.55 29.59 68.60 2.03 48.58 16 23 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 24 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 25 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 26 C 0.14 6.66 6.09 86.36 0.53 7.19 16 27 N -0.22 -6.04 12.04 -49.99 -0.60 -6.65 16 28 N -0.08 -1.95 13.65 37.02 0.51 -1.44 16 29 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.07 0.19 6.57 -2.39 -0.02 0.17 16 34 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.12 0.51 6.57 -2.38 -0.02 0.50 16 39 H 0.14 0.09 8.08 -2.39 -0.02 0.07 16 40 H 0.23 2.79 8.06 -2.91 -0.02 2.76 16 41 H 0.41 11.29 8.29 -92.70 -0.77 10.52 16 42 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 45 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 46 H 0.06 3.14 6.04 -2.39 -0.01 3.12 16 47 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 48 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16 49 H 0.03 1.75 7.93 -2.39 -0.02 1.73 16 50 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 Total: -1.00 -75.91 403.59 3.18 -72.73 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.16 Total: 14.28 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: 6.55 Total: 16.46 kcal Atomic # 7 Polarization: -124.09 SS G_CDS: -5.49 Total: -129.58 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.07 Total: -22.47 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -75.91 3.18 -72.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008511872.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.466 kcal (2) G-P(sol) polarization free energy of solvation -75.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.11 seconds