Wall clock time and date at job start Tue Mar 31 2020 20:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47052 * 2 1 4 4 C 1.36595 * 126.58387 * 270.00045 * 3 2 1 5 5 C 1.47529 * 125.76615 * 0.02562 * 4 3 2 6 6 O 1.21589 * 119.99965 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99433 * 180.02562 * 5 4 3 8 8 C 1.46503 * 119.99478 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.46919 * 179.97438 * 8 7 5 10 10 H 1.08996 * 109.49721 * 55.00059 * 9 8 7 11 11 C 1.53034 * 109.49947 * 175.06501 * 9 8 7 12 12 C 1.53032 * 109.54072 * 181.31495 * 11 9 8 13 13 C 1.53195 * 109.31747 * 298.63816 * 12 11 9 14 14 N 1.46920 * 108.77451 * 54.63127 * 13 12 11 15 15 C 1.36935 * 120.63351 * 126.38826 * 14 13 12 16 16 H 1.07997 * 120.00834 * 207.68288 * 15 14 13 17 17 C 1.38819 * 119.99661 * 27.68626 * 15 14 13 18 18 N 1.31619 * 119.99953 * 17.35708 * 17 15 14 19 19 Si 1.86798 * 120.00060 * 197.35639 * 17 15 14 20 20 H 1.48497 * 109.47108 * 60.00278 * 19 17 15 21 21 H 1.48503 * 109.47087 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47045 * 299.99884 * 19 17 15 23 23 C 1.46930 * 118.76540 * 306.41727 * 14 13 12 24 24 N 1.34396 * 108.46235 * 179.97438 * 4 3 2 25 25 N 1.28761 * 109.52176 * 0.02562 * 24 4 3 26 26 N 1.34819 * 126.57832 * 89.99886 * 3 2 1 27 27 C 1.46495 * 126.59242 * 0.02562 * 26 3 2 28 28 C 1.53001 * 109.47133 * 269.99572 * 27 26 3 29 29 H 1.09003 * 109.47123 * 299.99643 * 1 2 3 30 30 H 1.09003 * 109.47412 * 60.00118 * 1 2 3 31 31 H 1.09003 * 109.47205 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47123 * 240.00357 * 2 1 3 33 33 H 1.08995 * 109.46709 * 120.00305 * 2 1 3 34 34 H 0.97003 * 120.00248 * 359.97438 * 7 5 4 35 35 H 1.08990 * 109.47565 * 299.99786 * 8 7 5 36 36 H 1.09001 * 109.46835 * 60.00667 * 8 7 5 37 37 H 1.08994 * 109.46118 * 301.34155 * 11 9 8 38 38 H 1.09005 * 109.45655 * 61.31231 * 11 9 8 39 39 H 1.09004 * 109.49612 * 58.59309 * 12 11 9 40 40 H 1.09006 * 109.50149 * 178.68342 * 12 11 9 41 41 H 1.09002 * 109.58690 * 174.41902 * 13 12 11 42 42 H 1.08997 * 109.58358 * 294.70122 * 13 12 11 43 43 H 0.96993 * 120.00497 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.56280 * 293.78168 * 23 14 13 45 45 H 1.09001 * 109.62038 * 173.35766 * 23 14 13 46 46 H 1.08998 * 109.47876 * 29.99728 * 27 26 3 47 47 H 1.09003 * 109.47289 * 149.99488 * 27 26 3 48 48 H 1.08996 * 109.47296 * 60.00131 * 28 27 26 49 49 H 1.08999 * 109.46999 * 180.02562 * 28 27 26 50 50 H 1.08998 * 109.46942 * 300.00224 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3036 2.1884 -1.0968 5 6 2.1540 1.7668 -2.5027 6 8 1.7572 0.6473 -2.7627 7 7 2.4572 2.6227 -3.4987 8 6 2.3092 2.2039 -4.8947 9 6 2.7159 3.3542 -5.8180 10 1 3.7247 3.6824 -5.5676 11 6 2.6796 2.8791 -7.2723 12 6 3.1178 4.0192 -8.1943 13 6 2.1458 5.1938 -8.0450 14 7 2.0649 5.5631 -6.6253 15 6 2.2888 6.8537 -6.2261 16 1 2.6669 7.0545 -5.2346 17 6 2.0299 7.9040 -7.0961 18 7 1.2660 7.7120 -8.1506 19 14 2.7655 9.5898 -6.7701 20 1 4.2470 9.4898 -6.7595 21 1 2.3410 10.5301 -7.8382 22 1 2.2937 10.0896 -5.4537 23 6 1.7398 4.5215 -5.6412 24 7 2.7289 3.3928 -0.6788 25 7 2.7395 3.4224 0.6084 26 7 2.3001 2.1783 1.0827 27 6 2.1592 1.7782 2.4849 28 6 0.7500 2.1194 2.9734 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5139 0.8899 34 1 2.7735 3.5160 -3.2911 35 1 2.9479 1.3416 -5.0851 36 1 1.2701 1.9357 -5.0853 37 1 3.3554 2.0328 -7.3949 38 1 1.6652 2.5740 -7.5294 39 1 4.1228 4.3416 -7.9218 40 1 3.1142 3.6731 -9.2280 41 1 2.5080 6.0436 -8.6236 42 1 1.1598 4.9001 -8.4051 43 1 1.0853 8.4458 -8.7587 44 1 0.7198 4.1726 -5.8025 45 1 1.8342 4.9274 -4.6340 46 1 2.3249 0.7047 2.5750 47 1 2.8925 2.3111 3.0902 48 1 0.0166 1.5866 2.3682 49 1 0.6453 1.8222 4.0169 50 1 0.5842 3.1929 2.8834 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023589538.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:25 Heat of formation + Delta-G solvation = 59.723513 kcal Electronic energy + Delta-G solvation = -29435.459661 eV Core-core repulsion = 25499.721579 eV Total energy + Delta-G solvation = -3935.738083 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.45786 -39.37238 -37.70271 -36.12623 -34.82680 -34.00976 -32.93915 -31.02988 -30.58004 -30.37338 -29.63864 -25.85788 -25.22277 -24.76392 -24.25776 -23.17261 -22.02693 -21.00457 -20.47345 -20.32584 -19.06355 -18.00373 -16.77647 -16.50046 -16.06983 -15.76886 -15.18148 -15.06697 -14.94865 -14.74993 -14.25368 -14.09973 -13.92367 -13.57566 -13.38641 -13.31139 -13.04170 -12.76178 -12.72638 -12.62778 -12.27771 -12.17626 -12.14791 -12.10672 -11.66101 -11.39903 -11.23911 -11.14444 -10.95480 -10.64922 -10.46025 -10.43325 -10.19665 -10.13238 -10.01658 -9.84058 -9.51766 -9.37623 -9.31806 -8.81636 -8.40529 -6.62095 -5.73647 -3.15624 0.95637 1.66443 1.79021 3.27893 3.33387 3.43207 3.48165 3.50207 3.93304 3.99917 4.31113 4.33361 4.50422 4.53978 4.60363 4.77096 4.89851 4.96111 5.09669 5.12186 5.17584 5.35432 5.36605 5.46531 5.49535 5.52712 5.53473 5.64009 5.68529 5.82896 5.87641 5.92968 6.01012 6.05925 6.20445 6.29613 6.38386 6.42815 6.57186 6.66008 6.75343 6.84398 6.91112 7.02822 7.44919 7.57734 7.72453 7.85046 7.89330 8.28136 8.50145 9.26732 9.90182 10.46714 11.34789 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014017 B = 0.002713 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.092032 B =10317.829615 C =11778.069714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.064 4.064 3 C 0.124 3.876 4 C -0.102 4.102 5 C 0.603 3.397 6 O -0.544 6.544 7 N -0.707 5.707 8 C 0.128 3.872 9 C -0.118 4.118 10 H 0.074 0.926 11 C -0.099 4.099 12 C -0.142 4.142 13 C 0.169 3.831 14 N -0.591 5.591 15 C -0.252 4.252 16 H 0.066 0.934 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.902 3.098 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.153 3.847 24 N -0.199 5.199 25 N -0.067 5.067 26 N -0.362 5.362 27 C 0.117 3.883 28 C -0.174 4.174 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.117 0.883 33 H 0.076 0.924 34 H 0.411 0.589 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.047 0.953 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.086 0.914 42 H 0.017 0.983 43 H 0.254 0.746 44 H 0.018 0.982 45 H 0.052 0.948 46 H 0.101 0.899 47 H 0.106 0.894 48 H 0.067 0.933 49 H 0.084 0.916 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.786 -17.907 19.377 26.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.103 4.103 3 C -0.014 4.014 4 C -0.242 4.242 5 C 0.387 3.613 6 O -0.421 6.421 7 N -0.357 5.357 8 C 0.005 3.995 9 C -0.139 4.139 10 H 0.092 0.908 11 C -0.137 4.137 12 C -0.181 4.181 13 C 0.043 3.957 14 N -0.313 5.313 15 C -0.382 4.382 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.548 5.548 19 Si 0.731 3.269 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.209 1.209 23 C 0.027 3.973 24 N -0.072 5.072 25 N -0.046 5.046 26 N -0.147 5.147 27 C -0.004 4.004 28 C -0.232 4.232 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.135 0.865 33 H 0.095 0.905 34 H 0.247 0.753 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.035 0.965 43 H 0.064 0.936 44 H 0.036 0.964 45 H 0.070 0.930 46 H 0.119 0.881 47 H 0.125 0.875 48 H 0.086 0.914 49 H 0.103 0.897 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.945 -17.126 19.473 25.950 hybrid contribution 0.199 0.520 0.192 0.589 sum 1.143 -16.607 19.664 25.764 Atomic orbital electron populations 1.21735 0.93065 1.02843 1.02524 1.20469 0.97342 0.87274 1.05205 1.21930 0.96784 0.96237 0.86404 1.21272 1.15122 0.92248 0.95536 1.16703 0.77518 0.84597 0.82483 1.90737 1.47787 1.19929 1.83675 1.45888 1.66228 1.17439 1.06141 1.21512 1.01672 0.97507 0.78819 1.21961 1.01718 0.95646 0.94592 0.90762 1.21333 1.00720 0.97579 0.94057 1.22174 1.01135 0.97561 0.97238 1.20793 0.94515 0.94581 0.85801 1.44029 1.80976 1.04566 1.01740 1.19162 1.36616 0.82074 1.00329 0.91665 1.25021 0.98136 0.97729 0.98753 1.70031 1.37171 1.31591 1.15985 0.86379 0.79200 0.83975 0.77299 1.21040 1.21706 1.20862 1.20908 0.94060 0.88661 0.93713 1.74662 1.10583 1.17834 1.04103 1.82015 1.20213 0.98939 1.03448 1.50507 1.45517 1.11282 1.07438 1.21973 1.00235 1.01948 0.76293 1.22265 0.94844 1.03727 1.02388 0.92981 0.91365 0.91117 0.86491 0.90520 0.75273 0.91727 0.91338 0.93436 0.92471 0.92747 0.93217 0.89557 0.96490 0.93646 0.96380 0.92969 0.88119 0.87550 0.91370 0.89741 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.89 37.16 0.37 -0.71 16 2 C -0.06 -0.52 5.62 -27.88 -0.16 -0.67 16 3 C 0.12 1.37 6.27 -81.87 -0.51 0.86 16 4 C -0.10 -1.44 6.99 -83.55 -0.58 -2.02 16 5 C 0.60 9.11 7.82 -12.47 -0.10 9.01 16 6 O -0.54 -8.71 14.72 5.29 0.08 -8.64 16 7 N -0.71 -10.64 5.33 -61.35 -0.33 -10.97 16 8 C 0.13 1.93 5.07 -4.04 -0.02 1.91 16 9 C -0.12 -2.02 2.37 -90.50 -0.21 -2.23 16 10 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 11 C -0.10 -1.65 5.17 -26.70 -0.14 -1.78 16 12 C -0.14 -2.71 6.08 -26.61 -0.16 -2.88 16 13 C 0.17 4.06 5.31 -3.71 -0.02 4.04 16 14 N -0.59 -14.91 3.00 -172.32 -0.52 -15.42 16 15 C -0.25 -7.01 9.58 -15.06 -0.14 -7.15 16 16 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 17 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 18 N -0.90 -26.55 11.19 55.49 0.62 -25.93 16 19 Si 0.90 22.07 29.59 -169.99 -5.03 17.04 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 C 0.15 3.21 5.60 -3.71 -0.02 3.19 16 24 N -0.20 -3.03 12.04 32.85 0.40 -2.63 16 25 N -0.07 -0.92 13.78 60.35 0.83 -0.09 16 26 N -0.36 -3.64 3.63 -56.85 -0.21 -3.85 16 27 C 0.12 0.61 7.02 -4.04 -0.03 0.58 16 28 C -0.17 -0.78 10.24 37.16 0.38 -0.40 16 29 H 0.05 0.33 6.13 -51.93 -0.32 0.01 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.12 1.14 6.43 -51.93 -0.33 0.80 16 33 H 0.08 0.39 7.18 -51.93 -0.37 0.02 16 34 H 0.41 6.28 7.39 -40.82 -0.30 5.97 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.09 2.33 6.04 -51.93 -0.31 2.01 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.05 1.09 7.14 -51.93 -0.37 0.71 16 46 H 0.10 0.27 7.16 -51.93 -0.37 -0.10 16 47 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.07 0.34 6.13 -51.93 -0.32 0.02 16 49 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 50 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 396.31 15.07 5.97 5.97 Total: -1.00 -33.08 396.31 -7.79 -40.86 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -8.17 Total: 1.95 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -1.44 Total: 1.71 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: 0.80 Total: -58.89 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.08 Total: -8.64 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.08 -7.79 -40.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023589538.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.587 kcal (2) G-P(sol) polarization free energy of solvation -33.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds