Wall clock time and date at job start Tue Mar 31 2020 20:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47052 * 2 1 4 4 C 1.36595 * 126.58387 * 270.00045 * 3 2 1 5 5 C 1.47529 * 125.76615 * 0.02562 * 4 3 2 6 6 O 1.21589 * 119.99965 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99433 * 180.02562 * 5 4 3 8 8 C 1.46503 * 119.99478 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.46919 * 179.97438 * 8 7 5 10 10 H 1.08996 * 109.49721 * 55.00059 * 9 8 7 11 11 C 1.53034 * 109.49947 * 175.06501 * 9 8 7 12 12 C 1.53032 * 109.54072 * 181.31495 * 11 9 8 13 13 C 1.53195 * 109.31747 * 298.63816 * 12 11 9 14 14 N 1.46920 * 108.77451 * 54.63127 * 13 12 11 15 15 C 1.36935 * 120.63351 * 126.38826 * 14 13 12 16 16 H 1.07997 * 120.00834 * 207.68288 * 15 14 13 17 17 C 1.38819 * 119.99661 * 27.68626 * 15 14 13 18 18 N 1.31619 * 119.99953 * 17.35708 * 17 15 14 19 19 Si 1.86798 * 120.00060 * 197.35639 * 17 15 14 20 20 H 1.48497 * 109.47108 * 60.00278 * 19 17 15 21 21 H 1.48503 * 109.47087 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47045 * 299.99884 * 19 17 15 23 23 C 1.46930 * 118.76540 * 306.41727 * 14 13 12 24 24 N 1.34396 * 108.46235 * 179.97438 * 4 3 2 25 25 N 1.28761 * 109.52176 * 0.02562 * 24 4 3 26 26 N 1.34819 * 126.57832 * 89.99886 * 3 2 1 27 27 C 1.46495 * 126.59242 * 0.02562 * 26 3 2 28 28 C 1.53001 * 109.47133 * 269.99572 * 27 26 3 29 29 H 1.09003 * 109.47123 * 299.99643 * 1 2 3 30 30 H 1.09003 * 109.47412 * 60.00118 * 1 2 3 31 31 H 1.09003 * 109.47205 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47123 * 240.00357 * 2 1 3 33 33 H 1.08995 * 109.46709 * 120.00305 * 2 1 3 34 34 H 0.97003 * 120.00248 * 359.97438 * 7 5 4 35 35 H 1.08990 * 109.47565 * 299.99786 * 8 7 5 36 36 H 1.09001 * 109.46835 * 60.00667 * 8 7 5 37 37 H 1.08994 * 109.46118 * 301.34155 * 11 9 8 38 38 H 1.09005 * 109.45655 * 61.31231 * 11 9 8 39 39 H 1.09004 * 109.49612 * 58.59309 * 12 11 9 40 40 H 1.09006 * 109.50149 * 178.68342 * 12 11 9 41 41 H 1.09002 * 109.58690 * 174.41902 * 13 12 11 42 42 H 1.08997 * 109.58358 * 294.70122 * 13 12 11 43 43 H 0.96993 * 120.00497 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.56280 * 293.78168 * 23 14 13 45 45 H 1.09001 * 109.62038 * 173.35766 * 23 14 13 46 46 H 1.08998 * 109.47876 * 29.99728 * 27 26 3 47 47 H 1.09003 * 109.47289 * 149.99488 * 27 26 3 48 48 H 1.08996 * 109.47296 * 60.00131 * 28 27 26 49 49 H 1.08999 * 109.46999 * 180.02562 * 28 27 26 50 50 H 1.08998 * 109.46942 * 300.00224 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3036 2.1884 -1.0968 5 6 2.1540 1.7668 -2.5027 6 8 1.7572 0.6473 -2.7627 7 7 2.4572 2.6227 -3.4987 8 6 2.3092 2.2039 -4.8947 9 6 2.7159 3.3542 -5.8180 10 1 3.7247 3.6824 -5.5676 11 6 2.6796 2.8791 -7.2723 12 6 3.1178 4.0192 -8.1943 13 6 2.1458 5.1938 -8.0450 14 7 2.0649 5.5631 -6.6253 15 6 2.2888 6.8537 -6.2261 16 1 2.6669 7.0545 -5.2346 17 6 2.0299 7.9040 -7.0961 18 7 1.2660 7.7120 -8.1506 19 14 2.7655 9.5898 -6.7701 20 1 4.2470 9.4898 -6.7595 21 1 2.3410 10.5301 -7.8382 22 1 2.2937 10.0896 -5.4537 23 6 1.7398 4.5215 -5.6412 24 7 2.7289 3.3928 -0.6788 25 7 2.7395 3.4224 0.6084 26 7 2.3001 2.1783 1.0827 27 6 2.1592 1.7782 2.4849 28 6 0.7500 2.1194 2.9734 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5139 0.8899 34 1 2.7735 3.5160 -3.2911 35 1 2.9479 1.3416 -5.0851 36 1 1.2701 1.9357 -5.0853 37 1 3.3554 2.0328 -7.3949 38 1 1.6652 2.5740 -7.5294 39 1 4.1228 4.3416 -7.9218 40 1 3.1142 3.6731 -9.2280 41 1 2.5080 6.0436 -8.6236 42 1 1.1598 4.9001 -8.4051 43 1 1.0853 8.4458 -8.7587 44 1 0.7198 4.1726 -5.8025 45 1 1.8342 4.9274 -4.6340 46 1 2.3249 0.7047 2.5750 47 1 2.8925 2.3111 3.0902 48 1 0.0166 1.5866 2.3682 49 1 0.6453 1.8222 4.0169 50 1 0.5842 3.1929 2.8834 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023589538.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:24 Heat of formation + Delta-G solvation = 37.584779 kcal Electronic energy + Delta-G solvation = -29436.419669 eV Core-core repulsion = 25499.721579 eV Total energy + Delta-G solvation = -3936.698090 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.37107 -40.58969 -39.27821 -36.87227 -36.24014 -34.77679 -34.60519 -32.31498 -32.15668 -31.47479 -30.71775 -27.31715 -27.01188 -25.49415 -25.00761 -24.21124 -23.76413 -22.48243 -21.52072 -21.21249 -20.61896 -19.04409 -18.58536 -17.47545 -17.09521 -16.90416 -16.74707 -16.31115 -15.81622 -15.78543 -15.57443 -15.35604 -15.03802 -14.91894 -14.71919 -14.50394 -14.02030 -13.96818 -13.77741 -13.73353 -13.50959 -13.41476 -13.14097 -13.02121 -12.86379 -12.75320 -12.47988 -12.32969 -12.30271 -11.99584 -11.97889 -11.89006 -11.80907 -11.56374 -11.36043 -11.22521 -11.10944 -11.00050 -10.52511 -10.33667 -9.97039 -8.67544 -7.87081 -5.32130 0.09856 0.59176 1.08359 1.46091 1.48243 1.55149 2.15630 2.22444 2.51106 3.13444 3.26889 3.38433 3.51257 3.60198 3.71738 3.94865 3.99609 4.02979 4.06760 4.11881 4.23152 4.29662 4.42566 4.43723 4.49914 4.58575 4.59934 4.67897 4.75243 4.78271 4.86722 4.90074 4.91726 4.97479 5.02280 5.09964 5.12416 5.20361 5.24033 5.34509 5.37526 5.40708 5.47223 5.53860 5.57685 5.67531 5.80098 6.38281 6.41711 6.88186 7.12128 7.15567 7.87009 8.38150 9.18853 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014017 B = 0.002713 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.092032 B =10317.829615 C =11778.069714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.060 4.060 3 C 0.137 3.863 4 C -0.131 4.131 5 C 0.603 3.397 6 O -0.556 6.556 7 N -0.711 5.711 8 C 0.139 3.861 9 C -0.102 4.102 10 H 0.071 0.929 11 C -0.095 4.095 12 C -0.131 4.131 13 C 0.172 3.828 14 N -0.609 5.609 15 C -0.264 4.264 16 H 0.064 0.936 17 C -0.050 4.050 18 N -0.935 5.935 19 Si 0.966 3.034 20 H -0.278 1.278 21 H -0.293 1.293 22 H -0.277 1.277 23 C 0.153 3.847 24 N -0.229 5.229 25 N -0.094 5.094 26 N -0.347 5.347 27 C 0.102 3.898 28 C -0.170 4.170 29 H 0.065 0.935 30 H 0.036 0.964 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.409 0.591 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.059 0.941 39 H 0.051 0.949 40 H 0.072 0.928 41 H 0.051 0.949 42 H -0.005 1.005 43 H 0.250 0.750 44 H 0.008 0.992 45 H 0.046 0.954 46 H 0.137 0.863 47 H 0.118 0.882 48 H 0.065 0.935 49 H 0.114 0.886 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.547 -20.360 21.615 29.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.100 4.100 3 C -0.003 4.003 4 C -0.272 4.272 5 C 0.388 3.612 6 O -0.434 6.434 7 N -0.361 5.361 8 C 0.016 3.984 9 C -0.122 4.122 10 H 0.090 0.910 11 C -0.133 4.133 12 C -0.170 4.170 13 C 0.047 3.953 14 N -0.332 5.332 15 C -0.394 4.394 16 H 0.082 0.918 17 C -0.246 4.246 18 N -0.581 5.581 19 Si 0.793 3.207 20 H -0.204 1.204 21 H -0.219 1.219 22 H -0.203 1.203 23 C 0.027 3.973 24 N -0.102 5.102 25 N -0.073 5.073 26 N -0.132 5.132 27 C -0.016 4.016 28 C -0.228 4.228 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.136 0.864 34 H 0.244 0.756 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.013 0.987 43 H 0.059 0.941 44 H 0.026 0.974 45 H 0.065 0.935 46 H 0.155 0.845 47 H 0.136 0.864 48 H 0.084 0.916 49 H 0.133 0.867 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.717 -19.594 21.754 29.328 hybrid contribution -0.109 1.222 -0.380 1.284 sum 1.607 -18.373 21.374 28.231 Atomic orbital electron populations 1.21724 0.92549 1.03919 1.01663 1.20602 0.97570 0.85327 1.06468 1.22359 0.95107 0.97094 0.85741 1.21344 1.17107 0.92902 0.95811 1.16851 0.77023 0.84348 0.82969 1.90718 1.48391 1.20279 1.84030 1.45914 1.66444 1.17418 1.06284 1.21377 1.01764 0.96877 0.78412 1.21726 1.00101 0.94605 0.95805 0.91011 1.21326 1.01747 0.97567 0.92623 1.22007 0.99204 0.96322 0.99429 1.20651 0.94516 0.95282 0.84877 1.44293 1.81376 1.04746 1.02820 1.19477 1.36031 0.83561 1.00346 0.91807 1.25768 0.98768 1.01181 0.98836 1.70185 1.38615 1.32335 1.16931 0.85371 0.78514 0.79716 0.77049 1.20354 1.21875 1.20306 1.20999 0.94670 0.89114 0.92469 1.74621 1.11740 1.18857 1.04978 1.81896 1.21356 1.00985 1.03026 1.50849 1.43572 1.09861 1.08960 1.22557 1.01077 1.04297 0.73697 1.22264 0.94137 1.02229 1.04172 0.91572 0.94515 0.89065 0.88000 0.86422 0.75570 0.89948 0.91682 0.89764 0.92264 0.93057 0.90941 0.93006 0.98728 0.94105 0.97399 0.93518 0.84505 0.86408 0.91584 0.86733 0.93379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.89 71.98 0.71 -1.10 16 2 C -0.06 -0.82 5.62 29.85 0.17 -0.66 16 3 C 0.14 2.82 6.27 41.72 0.26 3.09 16 4 C -0.13 -3.70 6.99 40.82 0.29 -3.41 16 5 C 0.60 18.19 7.82 86.69 0.68 18.87 16 6 O -0.56 -17.50 14.72 -4.00 -0.06 -17.56 16 7 N -0.71 -21.40 5.33 -466.27 -2.48 -23.88 16 8 C 0.14 4.02 5.07 86.38 0.44 4.45 16 9 C -0.10 -3.38 2.37 -10.72 -0.03 -3.41 16 10 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 11 C -0.09 -2.96 5.17 30.62 0.16 -2.80 16 12 C -0.13 -4.87 6.08 30.67 0.19 -4.69 16 13 C 0.17 8.52 5.31 86.36 0.46 8.97 16 14 N -0.61 -31.55 3.00 -699.08 -2.09 -33.65 16 15 C -0.26 -15.05 9.58 84.04 0.81 -14.24 16 16 H 0.06 3.57 7.89 -2.91 -0.02 3.55 16 17 C -0.05 -2.89 4.91 84.86 0.42 -2.48 16 18 N -0.93 -56.79 11.19 21.65 0.24 -56.55 16 19 Si 0.97 46.34 29.59 68.60 2.03 48.37 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 22 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 23 C 0.15 6.54 5.60 86.36 0.48 7.03 16 24 N -0.23 -7.14 12.04 -49.99 -0.60 -7.74 16 25 N -0.09 -2.56 13.78 37.02 0.51 -2.05 16 26 N -0.35 -6.43 3.63 -333.78 -1.21 -7.64 16 27 C 0.10 0.75 7.02 86.38 0.61 1.36 16 28 C -0.17 -1.07 10.24 71.98 0.74 -0.33 16 29 H 0.07 0.66 6.13 -2.39 -0.01 0.64 16 30 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 1.79 6.43 -2.39 -0.02 1.78 16 33 H 0.12 0.64 7.18 -2.39 -0.02 0.62 16 34 H 0.41 12.77 7.39 -92.71 -0.68 12.08 16 35 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 40 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 41 H 0.05 2.90 6.04 -2.39 -0.01 2.89 16 42 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 43 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 44 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.05 2.00 7.14 -2.39 -0.02 1.99 16 46 H 0.14 0.07 7.16 -2.39 -0.02 0.05 16 47 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.07 0.46 6.13 -2.39 -0.01 0.45 16 49 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 50 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -75.40 396.31 2.96 -72.44 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.26 Total: 17.61 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 6.37 Total: 10.66 kcal Atomic # 7 Polarization: -125.87 SS G_CDS: -5.64 Total: -131.51 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.06 Total: -17.56 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -75.40 2.96 -72.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023589538.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.026 kcal (2) G-P(sol) polarization free energy of solvation -75.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds