Wall clock time and date at job start Tue Mar 31 2020 20:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47364 * 2 1 4 4 C 1.36596 * 126.58132 * 269.97104 * 3 2 1 5 5 C 1.47533 * 125.76616 * 359.75684 * 4 3 2 6 6 O 1.21599 * 119.99868 * 0.02562 * 5 4 3 7 7 N 1.34775 * 119.99555 * 179.97438 * 5 4 3 8 8 C 1.46504 * 119.99713 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47094 * 180.02562 * 8 7 5 10 10 H 1.08992 * 109.49490 * 305.05973 * 9 8 7 11 11 C 1.53041 * 109.49362 * 184.99585 * 9 8 7 12 12 C 1.53046 * 109.53483 * 178.67885 * 11 9 8 13 13 C 1.53188 * 109.30972 * 61.36703 * 12 11 9 14 14 N 1.46924 * 108.77996 * 305.36589 * 13 12 11 15 15 C 1.36936 * 120.63096 * 233.58986 * 14 13 12 16 16 H 1.08003 * 120.00166 * 151.82879 * 15 14 13 17 17 C 1.38817 * 119.99928 * 331.83024 * 15 14 13 18 18 N 1.31611 * 119.99894 * 343.07444 * 17 15 14 19 19 Si 1.86804 * 119.99930 * 163.07774 * 17 15 14 20 20 H 1.48503 * 109.47051 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47247 * 119.99756 * 19 17 15 22 22 H 1.48500 * 109.46733 * 239.99774 * 19 17 15 23 23 C 1.46927 * 118.73980 * 53.60593 * 14 13 12 24 24 N 1.34398 * 108.46492 * 180.02562 * 4 3 2 25 25 N 1.28766 * 109.51743 * 0.02562 * 24 4 3 26 26 N 1.34818 * 126.58446 * 89.99508 * 3 2 1 27 27 C 1.46502 * 126.59031 * 0.02562 * 26 3 2 28 28 C 1.52997 * 109.46889 * 90.00168 * 27 26 3 29 29 H 1.08991 * 109.47141 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46951 * 300.00589 * 1 2 3 31 31 H 1.09001 * 109.46887 * 60.00272 * 1 2 3 32 32 H 1.08998 * 109.47601 * 239.99656 * 2 1 3 33 33 H 1.09001 * 109.46887 * 119.99727 * 2 1 3 34 34 H 0.96996 * 120.00618 * 359.97438 * 7 5 4 35 35 H 1.09009 * 109.46679 * 299.99957 * 8 7 5 36 36 H 1.08995 * 109.47190 * 59.99349 * 8 7 5 37 37 H 1.08993 * 109.46581 * 298.70159 * 11 9 8 38 38 H 1.09006 * 109.46021 * 58.67960 * 11 9 8 39 39 H 1.09001 * 109.49837 * 181.32026 * 12 11 9 40 40 H 1.08998 * 109.49973 * 301.38585 * 12 11 9 41 41 H 1.09007 * 109.58716 * 65.15284 * 13 12 11 42 42 H 1.09000 * 109.58684 * 185.57344 * 13 12 11 43 43 H 0.96999 * 120.00091 * 179.97438 * 18 17 15 44 44 H 1.08992 * 109.58785 * 186.61229 * 23 14 13 45 45 H 1.08994 * 109.58633 * 66.18262 * 23 14 13 46 46 H 1.08996 * 109.47186 * 209.99865 * 27 26 3 47 47 H 1.08998 * 109.47267 * 330.00384 * 27 26 3 48 48 H 1.09006 * 109.47599 * 299.99436 * 28 27 26 49 49 H 1.09000 * 109.47597 * 59.99596 * 28 27 26 50 50 H 1.09002 * 109.47113 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3043 2.1881 -1.0969 5 6 2.1606 1.7644 -2.5027 6 8 1.7687 0.6430 -2.7627 7 7 2.4627 2.6206 -3.4988 8 6 2.3195 2.2001 -4.8948 9 6 2.7251 3.3506 -5.8182 10 1 2.1442 4.2387 -5.5694 11 6 2.4582 2.9565 -7.2727 12 6 2.8327 4.1191 -8.1949 13 6 4.3260 4.4253 -8.0431 14 7 4.6181 4.6633 -6.6230 15 6 5.2522 5.8094 -6.2237 16 1 5.0757 6.2079 -5.2355 17 6 6.1217 6.4591 -7.0890 18 7 6.5974 5.8272 -8.1410 19 14 6.6167 8.2301 -6.7603 20 1 5.9489 8.7093 -5.5235 21 1 8.0898 8.3089 -6.5903 22 1 6.2044 9.0800 -7.9061 23 6 4.2172 3.6480 -5.6395 24 7 2.7305 3.3923 -0.6790 25 7 2.7412 3.4219 0.6083 26 7 2.3002 2.1784 1.0826 27 6 2.1592 1.7784 2.4849 28 6 3.4703 1.1589 2.9727 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.7743 3.5154 -3.2914 35 1 2.9622 1.3399 -5.0829 36 1 1.2820 1.9273 -5.0875 37 1 3.0576 2.0828 -7.5281 38 1 1.4012 2.7207 -7.3970 39 1 2.6204 3.8464 -9.2287 40 1 2.2509 5.0002 -7.9242 41 1 4.9109 3.5772 -8.3993 42 1 4.5774 5.3140 -8.6219 43 1 7.2048 6.2812 -8.7458 44 1 4.3967 4.0240 -4.6323 45 1 4.7932 2.7367 -5.7996 46 1 1.9235 2.6536 3.0903 47 1 1.3560 1.0471 2.5752 48 1 3.7060 0.2836 2.3673 49 1 4.2735 1.8901 2.8824 50 1 3.3656 0.8617 4.0162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023589543.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:29 Heat of formation + Delta-G solvation = 58.529251 kcal Electronic energy + Delta-G solvation = -29384.327334 eV Core-core repulsion = 25448.537464 eV Total energy + Delta-G solvation = -3935.789870 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.45691 -39.37238 -37.70411 -36.09597 -34.83618 -34.06138 -32.94023 -31.00337 -30.53295 -30.37289 -29.67509 -25.92828 -25.23518 -24.87146 -24.05490 -23.11681 -22.02928 -21.04562 -20.57356 -20.32746 -19.06326 -17.95226 -16.71728 -16.40273 -16.26757 -15.77810 -15.14878 -14.98863 -14.93099 -14.75375 -14.25561 -14.12231 -13.93911 -13.56362 -13.40192 -13.34217 -13.03814 -12.74971 -12.72158 -12.59832 -12.28568 -12.16943 -12.13747 -12.10907 -11.72448 -11.57104 -11.22856 -11.10148 -10.96676 -10.67753 -10.44021 -10.42175 -10.16664 -10.13660 -10.01536 -9.84582 -9.52216 -9.37050 -9.32010 -8.81775 -8.41826 -6.61603 -5.73990 -3.16516 0.95332 1.66329 1.78846 3.27793 3.33307 3.40990 3.48948 3.51858 3.93364 3.99587 4.31922 4.32945 4.52275 4.54033 4.59649 4.78662 4.88001 4.97469 5.05138 5.13680 5.19004 5.33281 5.35717 5.46654 5.49324 5.52520 5.53144 5.62481 5.68001 5.80456 5.86622 5.87496 6.00733 6.05799 6.20376 6.29586 6.38270 6.42677 6.57093 6.66002 6.75215 6.84342 6.91027 7.02875 7.44847 7.57639 7.72189 7.85416 7.89203 8.28012 8.50078 9.26530 9.89804 10.46586 11.34427 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014120 B = 0.002705 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.464512 B =10350.231861 C =11948.984100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.065 4.065 3 C 0.125 3.875 4 C -0.102 4.102 5 C 0.603 3.397 6 O -0.544 6.544 7 N -0.707 5.707 8 C 0.128 3.872 9 C -0.118 4.118 10 H 0.074 0.926 11 C -0.099 4.099 12 C -0.142 4.142 13 C 0.169 3.831 14 N -0.591 5.591 15 C -0.250 4.250 16 H 0.066 0.934 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.900 3.100 20 H -0.277 1.277 21 H -0.291 1.291 22 H -0.289 1.289 23 C 0.153 3.847 24 N -0.199 5.199 25 N -0.067 5.067 26 N -0.362 5.362 27 C 0.116 3.884 28 C -0.172 4.172 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.411 0.589 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.049 0.951 40 H 0.054 0.946 41 H 0.017 0.983 42 H 0.086 0.914 43 H 0.252 0.748 44 H 0.052 0.948 45 H 0.018 0.982 46 H 0.107 0.893 47 H 0.101 0.899 48 H 0.065 0.935 49 H 0.070 0.930 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.742 -13.138 19.392 26.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.105 4.105 3 C -0.013 4.013 4 C -0.242 4.242 5 C 0.387 3.613 6 O -0.421 6.421 7 N -0.357 5.357 8 C 0.005 3.995 9 C -0.139 4.139 10 H 0.092 0.908 11 C -0.137 4.137 12 C -0.181 4.181 13 C 0.043 3.957 14 N -0.314 5.314 15 C -0.380 4.380 16 H 0.084 0.916 17 C -0.197 4.197 18 N -0.547 5.547 19 Si 0.730 3.270 20 H -0.202 1.202 21 H -0.218 1.218 22 H -0.216 1.216 23 C 0.026 3.974 24 N -0.072 5.072 25 N -0.046 5.046 26 N -0.148 5.148 27 C -0.005 4.005 28 C -0.230 4.230 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.136 0.864 33 H 0.096 0.904 34 H 0.247 0.753 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.035 0.965 42 H 0.104 0.896 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.036 0.964 46 H 0.125 0.875 47 H 0.119 0.881 48 H 0.084 0.916 49 H 0.089 0.911 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.380 -12.433 19.501 26.232 hybrid contribution 0.231 0.506 0.167 0.581 sum -12.149 -11.926 19.668 26.013 Atomic orbital electron populations 1.21666 0.93142 1.02812 1.02327 1.20487 0.97246 0.87327 1.05392 1.21923 0.96867 0.96142 0.86391 1.21273 1.15037 0.92309 0.95538 1.16706 0.77502 0.84612 0.82483 1.90738 1.48002 1.19720 1.83674 1.45885 1.66337 1.17318 1.06142 1.21514 1.01082 0.98103 0.78819 1.21959 1.00672 0.96689 0.94586 0.90760 1.21338 0.99474 0.98825 0.94057 1.22174 1.01426 0.97264 0.97240 1.20795 0.88578 1.00489 0.85808 1.44047 1.67068 1.18521 1.01718 1.19241 1.18663 0.99407 1.00703 0.91599 1.25039 0.96790 0.99070 0.98785 1.70046 1.33308 1.35144 1.16251 0.86246 0.77877 0.85156 0.77675 1.20170 1.21784 1.21621 1.20908 0.90294 0.92428 0.93731 1.74667 1.10433 1.17991 1.04098 1.82012 1.20058 0.99072 1.03454 1.50504 1.45541 1.11282 1.07434 1.21985 1.00123 1.02081 0.76301 1.22203 0.96590 1.01881 1.02358 0.91096 0.93232 0.91452 0.86393 0.90429 0.75274 0.91335 0.91726 0.92467 0.93440 0.93220 0.92747 0.96476 0.89593 0.93756 0.92963 0.96370 0.87520 0.88096 0.91609 0.91076 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.89 37.16 0.37 -0.65 16 2 C -0.07 -0.53 5.44 -27.88 -0.15 -0.68 16 3 C 0.12 1.38 6.27 -81.87 -0.51 0.86 16 4 C -0.10 -1.44 6.99 -83.55 -0.58 -2.02 16 5 C 0.60 9.11 7.82 -12.47 -0.10 9.01 16 6 O -0.54 -8.71 14.71 5.28 0.08 -8.64 16 7 N -0.71 -10.64 5.33 -61.35 -0.33 -10.96 16 8 C 0.13 1.92 5.07 -4.04 -0.02 1.90 16 9 C -0.12 -2.01 2.37 -90.50 -0.21 -2.23 16 10 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 11 C -0.10 -1.64 5.17 -26.69 -0.14 -1.78 16 12 C -0.14 -2.71 6.08 -26.61 -0.16 -2.87 16 13 C 0.17 4.06 5.30 -3.71 -0.02 4.04 16 14 N -0.59 -14.91 2.99 -172.32 -0.52 -15.42 16 15 C -0.25 -6.96 9.58 -15.06 -0.14 -7.10 16 16 H 0.07 1.81 7.89 -52.48 -0.41 1.39 16 17 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 18 N -0.90 -26.55 11.20 55.49 0.62 -25.92 16 19 Si 0.90 22.05 29.59 -169.99 -5.03 17.02 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 C 0.15 3.21 5.60 -3.71 -0.02 3.19 16 24 N -0.20 -3.03 12.04 32.85 0.40 -2.63 16 25 N -0.07 -0.92 13.78 60.35 0.83 -0.09 16 26 N -0.36 -3.65 3.63 -56.85 -0.21 -3.85 16 27 C 0.12 0.61 6.87 -4.04 -0.03 0.58 16 28 C -0.17 -0.77 10.24 37.16 0.38 -0.39 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.12 1.17 6.42 -51.93 -0.33 0.84 16 33 H 0.08 0.41 7.82 -51.93 -0.41 0.00 16 34 H 0.41 6.27 7.39 -40.82 -0.30 5.97 16 35 H 0.07 1.06 8.14 -51.92 -0.42 0.63 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.09 2.32 6.06 -51.93 -0.31 2.00 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.05 1.09 7.14 -51.93 -0.37 0.72 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.10 0.29 7.76 -51.93 -0.40 -0.12 16 48 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 LS Contribution 401.27 15.07 6.05 6.05 Total: -1.00 -33.10 401.27 -7.98 -41.08 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -8.44 Total: 1.54 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -1.43 Total: 1.83 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: 0.80 Total: -58.88 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.08 Total: -8.64 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.10 -7.98 -41.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023589543.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.610 kcal (2) G-P(sol) polarization free energy of solvation -33.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds