Wall clock time and date at job start Tue Mar 31 2020 20:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47364 * 2 1 4 4 C 1.36596 * 126.58132 * 269.97104 * 3 2 1 5 5 C 1.47533 * 125.76616 * 359.75684 * 4 3 2 6 6 O 1.21599 * 119.99868 * 0.02562 * 5 4 3 7 7 N 1.34775 * 119.99555 * 179.97438 * 5 4 3 8 8 C 1.46504 * 119.99713 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47094 * 180.02562 * 8 7 5 10 10 H 1.08992 * 109.49490 * 305.05973 * 9 8 7 11 11 C 1.53041 * 109.49362 * 184.99585 * 9 8 7 12 12 C 1.53046 * 109.53483 * 178.67885 * 11 9 8 13 13 C 1.53188 * 109.30972 * 61.36703 * 12 11 9 14 14 N 1.46924 * 108.77996 * 305.36589 * 13 12 11 15 15 C 1.36936 * 120.63096 * 233.58986 * 14 13 12 16 16 H 1.08003 * 120.00166 * 151.82879 * 15 14 13 17 17 C 1.38817 * 119.99928 * 331.83024 * 15 14 13 18 18 N 1.31611 * 119.99894 * 343.07444 * 17 15 14 19 19 Si 1.86804 * 119.99930 * 163.07774 * 17 15 14 20 20 H 1.48503 * 109.47051 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47247 * 119.99756 * 19 17 15 22 22 H 1.48500 * 109.46733 * 239.99774 * 19 17 15 23 23 C 1.46927 * 118.73980 * 53.60593 * 14 13 12 24 24 N 1.34398 * 108.46492 * 180.02562 * 4 3 2 25 25 N 1.28766 * 109.51743 * 0.02562 * 24 4 3 26 26 N 1.34818 * 126.58446 * 89.99508 * 3 2 1 27 27 C 1.46502 * 126.59031 * 0.02562 * 26 3 2 28 28 C 1.52997 * 109.46889 * 90.00168 * 27 26 3 29 29 H 1.08991 * 109.47141 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46951 * 300.00589 * 1 2 3 31 31 H 1.09001 * 109.46887 * 60.00272 * 1 2 3 32 32 H 1.08998 * 109.47601 * 239.99656 * 2 1 3 33 33 H 1.09001 * 109.46887 * 119.99727 * 2 1 3 34 34 H 0.96996 * 120.00618 * 359.97438 * 7 5 4 35 35 H 1.09009 * 109.46679 * 299.99957 * 8 7 5 36 36 H 1.08995 * 109.47190 * 59.99349 * 8 7 5 37 37 H 1.08993 * 109.46581 * 298.70159 * 11 9 8 38 38 H 1.09006 * 109.46021 * 58.67960 * 11 9 8 39 39 H 1.09001 * 109.49837 * 181.32026 * 12 11 9 40 40 H 1.08998 * 109.49973 * 301.38585 * 12 11 9 41 41 H 1.09007 * 109.58716 * 65.15284 * 13 12 11 42 42 H 1.09000 * 109.58684 * 185.57344 * 13 12 11 43 43 H 0.96999 * 120.00091 * 179.97438 * 18 17 15 44 44 H 1.08992 * 109.58785 * 186.61229 * 23 14 13 45 45 H 1.08994 * 109.58633 * 66.18262 * 23 14 13 46 46 H 1.08996 * 109.47186 * 209.99865 * 27 26 3 47 47 H 1.08998 * 109.47267 * 330.00384 * 27 26 3 48 48 H 1.09006 * 109.47599 * 299.99436 * 28 27 26 49 49 H 1.09000 * 109.47597 * 59.99596 * 28 27 26 50 50 H 1.09002 * 109.47113 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3043 2.1881 -1.0969 5 6 2.1606 1.7644 -2.5027 6 8 1.7687 0.6430 -2.7627 7 7 2.4627 2.6206 -3.4988 8 6 2.3195 2.2001 -4.8948 9 6 2.7251 3.3506 -5.8182 10 1 2.1442 4.2387 -5.5694 11 6 2.4582 2.9565 -7.2727 12 6 2.8327 4.1191 -8.1949 13 6 4.3260 4.4253 -8.0431 14 7 4.6181 4.6633 -6.6230 15 6 5.2522 5.8094 -6.2237 16 1 5.0757 6.2079 -5.2355 17 6 6.1217 6.4591 -7.0890 18 7 6.5974 5.8272 -8.1410 19 14 6.6167 8.2301 -6.7603 20 1 5.9489 8.7093 -5.5235 21 1 8.0898 8.3089 -6.5903 22 1 6.2044 9.0800 -7.9061 23 6 4.2172 3.6480 -5.6395 24 7 2.7305 3.3923 -0.6790 25 7 2.7412 3.4219 0.6083 26 7 2.3002 2.1784 1.0826 27 6 2.1592 1.7784 2.4849 28 6 3.4703 1.1589 2.9727 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.7743 3.5154 -3.2914 35 1 2.9622 1.3399 -5.0829 36 1 1.2820 1.9273 -5.0875 37 1 3.0576 2.0828 -7.5281 38 1 1.4012 2.7207 -7.3970 39 1 2.6204 3.8464 -9.2287 40 1 2.2509 5.0002 -7.9242 41 1 4.9109 3.5772 -8.3993 42 1 4.5774 5.3140 -8.6219 43 1 7.2048 6.2812 -8.7458 44 1 4.3967 4.0240 -4.6323 45 1 4.7932 2.7367 -5.7996 46 1 1.9235 2.6536 3.0903 47 1 1.3560 1.0471 2.5752 48 1 3.7060 0.2836 2.3673 49 1 4.2735 1.8901 2.8824 50 1 3.3656 0.8617 4.0162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023589543.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:28 Heat of formation + Delta-G solvation = 36.560497 kcal Electronic energy + Delta-G solvation = -29385.279970 eV Core-core repulsion = 25448.537464 eV Total energy + Delta-G solvation = -3936.742506 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.37186 -40.58954 -39.27857 -36.84614 -36.24039 -34.81725 -34.61258 -32.31647 -32.16285 -31.38682 -30.74844 -27.32803 -27.03647 -25.67167 -24.83379 -24.09268 -23.75608 -22.48829 -21.53133 -21.34720 -20.61646 -19.00953 -18.57752 -17.32934 -17.17759 -16.93490 -16.80570 -16.31962 -15.81234 -15.70719 -15.54361 -15.34259 -15.02809 -14.90807 -14.77317 -14.50377 -14.03799 -13.97833 -13.76184 -13.73498 -13.49817 -13.36318 -13.15650 -13.01116 -12.89636 -12.70091 -12.52396 -12.30031 -12.25104 -12.23457 -11.95687 -11.84648 -11.80875 -11.56177 -11.36115 -11.20922 -11.10847 -10.99730 -10.54362 -10.34120 -9.97265 -8.67058 -7.87314 -5.32952 0.09465 0.59001 1.07916 1.44822 1.46617 1.57671 2.15631 2.22178 2.50662 3.13216 3.26954 3.37791 3.51883 3.60030 3.70710 3.94202 3.99680 4.03049 4.07889 4.14491 4.26746 4.28582 4.41280 4.43250 4.51218 4.58742 4.59985 4.67013 4.75113 4.78026 4.89790 4.90434 4.92634 4.96323 5.02317 5.12477 5.14332 5.17132 5.24170 5.31292 5.35216 5.40001 5.47173 5.53440 5.57864 5.67704 5.79902 6.38417 6.41750 6.87942 7.12003 7.15525 7.86694 8.38089 9.18818 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014120 B = 0.002705 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.464512 B =10350.231861 C =11948.984100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.062 4.062 3 C 0.137 3.863 4 C -0.131 4.131 5 C 0.603 3.397 6 O -0.556 6.556 7 N -0.711 5.711 8 C 0.139 3.861 9 C -0.102 4.102 10 H 0.072 0.928 11 C -0.095 4.095 12 C -0.131 4.131 13 C 0.173 3.827 14 N -0.610 5.610 15 C -0.261 4.261 16 H 0.064 0.936 17 C -0.051 4.051 18 N -0.935 5.935 19 Si 0.965 3.035 20 H -0.268 1.268 21 H -0.292 1.292 22 H -0.288 1.288 23 C 0.153 3.847 24 N -0.229 5.229 25 N -0.093 5.093 26 N -0.347 5.347 27 C 0.102 3.898 28 C -0.168 4.168 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.039 0.961 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.409 0.591 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.051 0.949 41 H -0.005 1.005 42 H 0.051 0.949 43 H 0.250 0.750 44 H 0.046 0.954 45 H 0.008 0.992 46 H 0.118 0.882 47 H 0.136 0.864 48 H 0.063 0.937 49 H 0.048 0.952 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.834 -14.576 21.604 29.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.102 4.102 3 C -0.003 4.003 4 C -0.271 4.271 5 C 0.388 3.612 6 O -0.434 6.434 7 N -0.360 5.360 8 C 0.016 3.984 9 C -0.122 4.122 10 H 0.090 0.910 11 C -0.133 4.133 12 C -0.170 4.170 13 C 0.047 3.953 14 N -0.333 5.333 15 C -0.391 4.391 16 H 0.082 0.918 17 C -0.246 4.246 18 N -0.581 5.581 19 Si 0.793 3.207 20 H -0.192 1.192 21 H -0.220 1.220 22 H -0.215 1.215 23 C 0.027 3.973 24 N -0.102 5.102 25 N -0.072 5.072 26 N -0.133 5.133 27 C -0.016 4.016 28 C -0.226 4.226 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.118 0.882 33 H 0.132 0.868 34 H 0.244 0.756 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.013 0.987 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.026 0.974 46 H 0.136 0.864 47 H 0.154 0.846 48 H 0.082 0.918 49 H 0.067 0.933 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.491 -13.876 21.756 29.594 hybrid contribution 0.896 0.863 -0.401 1.307 sum -13.594 -13.013 21.356 28.464 Atomic orbital electron populations 1.21655 0.92120 1.03952 1.01831 1.20615 0.97919 0.85314 1.06311 1.22352 0.95203 0.96971 0.85735 1.21344 1.17011 0.92970 0.95808 1.16853 0.77026 0.84348 0.82966 1.90721 1.48645 1.20036 1.84027 1.45911 1.66549 1.17296 1.06284 1.21379 1.01871 0.96777 0.78409 1.21724 0.97217 0.97491 0.95796 0.91007 1.21330 1.01725 0.97588 0.92624 1.22007 0.97200 0.98332 0.99423 1.20650 0.91808 0.97950 0.84879 1.44310 1.67244 1.18920 1.02800 1.19534 1.18453 1.00477 1.00659 0.91819 1.25781 0.97227 1.02716 0.98886 1.70193 1.34171 1.36520 1.17214 0.85244 0.77173 0.80580 0.77704 1.19212 1.21955 1.21464 1.21000 0.92955 0.90831 0.92486 1.74627 1.11551 1.19038 1.04969 1.81894 1.21159 1.01140 1.03034 1.50844 1.43574 1.09905 1.08950 1.22558 1.01726 1.03619 0.73716 1.22202 0.95291 1.00977 1.04147 0.89134 0.91510 0.94165 0.88191 0.86750 0.75567 0.91649 0.89982 0.92258 0.89777 0.90955 0.93026 0.98719 0.93062 0.94129 0.93508 0.97370 0.86379 0.84628 0.91779 0.93326 0.86726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.89 71.98 0.71 -0.89 16 2 C -0.06 -0.86 5.44 29.85 0.16 -0.69 16 3 C 0.14 2.84 6.27 41.72 0.26 3.10 16 4 C -0.13 -3.69 6.99 40.82 0.29 -3.41 16 5 C 0.60 18.19 7.82 86.69 0.68 18.86 16 6 O -0.56 -17.51 14.71 -4.03 -0.06 -17.57 16 7 N -0.71 -21.36 5.33 -466.26 -2.48 -23.85 16 8 C 0.14 4.01 5.07 86.38 0.44 4.45 16 9 C -0.10 -3.37 2.37 -10.72 -0.03 -3.40 16 10 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 11 C -0.09 -2.95 5.17 30.62 0.16 -2.80 16 12 C -0.13 -4.86 6.08 30.67 0.19 -4.67 16 13 C 0.17 8.52 5.30 86.36 0.46 8.98 16 14 N -0.61 -31.52 2.99 -699.11 -2.09 -33.62 16 15 C -0.26 -14.85 9.58 84.04 0.81 -14.05 16 16 H 0.06 3.57 7.89 -2.91 -0.02 3.55 16 17 C -0.05 -2.93 4.92 84.86 0.42 -2.51 16 18 N -0.93 -56.79 11.20 21.65 0.24 -56.55 16 19 Si 0.96 46.34 29.59 68.60 2.03 48.37 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 21 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 23 C 0.15 6.52 5.60 86.36 0.48 7.01 16 24 N -0.23 -7.13 12.04 -49.99 -0.60 -7.73 16 25 N -0.09 -2.55 13.78 37.02 0.51 -2.04 16 26 N -0.35 -6.45 3.63 -333.78 -1.21 -7.66 16 27 C 0.10 0.76 6.87 86.38 0.59 1.35 16 28 C -0.17 -1.06 10.24 71.98 0.74 -0.32 16 29 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.10 1.83 6.42 -2.39 -0.02 1.82 16 33 H 0.11 0.73 7.82 -2.39 -0.02 0.71 16 34 H 0.41 12.75 7.39 -92.71 -0.69 12.06 16 35 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 36 H 0.08 2.13 8.14 -2.39 -0.02 2.12 16 37 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 39 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 41 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 42 H 0.05 2.87 6.06 -2.39 -0.01 2.85 16 43 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 44 H 0.05 2.01 7.14 -2.39 -0.02 1.99 16 45 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.14 0.12 7.76 -2.39 -0.02 0.11 16 48 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 49 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 50 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 Total: -1.00 -75.27 401.27 2.93 -72.34 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.25 Total: 17.30 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 6.35 Total: 11.02 kcal Atomic # 7 Polarization: -125.82 SS G_CDS: -5.64 Total: -131.45 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.06 Total: -17.57 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -75.27 2.93 -72.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023589543.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.899 kcal (2) G-P(sol) polarization free energy of solvation -75.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds