Wall clock time and date at job start Tue Mar 31 2020 18:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36594 * 126.57957 * 2 1 4 4 C 1.47525 * 125.77184 * 0.02562 * 3 2 1 5 5 O 1.21595 * 119.99714 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00096 * 179.97438 * 4 3 2 7 7 C 1.46499 * 120.00141 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.47477 * 179.97438 * 7 6 4 9 9 H 1.09002 * 109.52043 * 305.07684 * 8 7 6 10 10 C 1.53032 * 109.49995 * 184.99769 * 8 7 6 11 11 C 1.53043 * 109.53877 * 178.68217 * 10 8 7 12 12 C 1.53186 * 109.31437 * 61.36566 * 11 10 8 13 13 N 1.46927 * 108.77479 * 305.36434 * 12 11 10 14 14 C 1.36936 * 120.63328 * 233.58439 * 13 12 11 15 15 H 1.08004 * 119.99687 * 151.83020 * 14 13 12 16 16 C 1.38804 * 119.99782 * 331.83092 * 14 13 12 17 17 N 1.31622 * 120.00247 * 343.08514 * 16 14 13 18 18 Si 1.86810 * 119.99877 * 163.08468 * 16 14 13 19 19 H 1.48499 * 109.47137 * 59.99982 * 18 16 14 20 20 H 1.48496 * 109.47053 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46625 * 300.00079 * 18 16 14 22 22 C 1.46933 * 118.73465 * 53.86032 * 13 12 11 23 23 N 1.34398 * 108.46081 * 180.26660 * 3 2 1 24 24 N 1.28768 * 109.51944 * 359.58862 * 23 3 2 25 25 N 1.34812 * 126.58289 * 180.02562 * 2 1 3 26 26 C 1.46501 * 126.59150 * 359.93962 * 25 2 1 27 27 C 1.53005 * 109.47359 * 120.00027 * 26 25 2 28 28 C 1.52996 * 109.47253 * 240.00190 * 26 25 2 29 29 H 1.08998 * 109.47217 * 89.96964 * 1 2 3 30 30 H 1.08998 * 109.46702 * 209.97591 * 1 2 3 31 31 H 1.09000 * 109.47113 * 329.96973 * 1 2 3 32 32 H 0.97002 * 119.99805 * 359.97438 * 6 4 3 33 33 H 1.08995 * 109.47309 * 59.99182 * 7 6 4 34 34 H 1.09002 * 109.46648 * 299.99953 * 7 6 4 35 35 H 1.09003 * 109.46153 * 58.66055 * 10 8 7 36 36 H 1.08997 * 109.44923 * 298.69567 * 10 8 7 37 37 H 1.08996 * 109.49433 * 301.41091 * 11 10 8 38 38 H 1.09007 * 109.52229 * 181.32916 * 11 10 8 39 39 H 1.09001 * 109.59236 * 185.57892 * 12 11 10 40 40 H 1.09008 * 109.70642 * 65.21545 * 12 11 10 41 41 H 0.97001 * 120.00021 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.58974 * 65.93163 * 22 13 12 43 43 H 1.09003 * 109.58500 * 186.35202 * 22 13 12 44 44 H 1.09008 * 109.47354 * 0.02562 * 26 25 2 45 45 H 1.08998 * 109.46793 * 59.99649 * 27 26 25 46 46 H 1.08994 * 109.47575 * 180.02562 * 27 26 25 47 47 H 1.09000 * 109.46923 * 300.00143 * 27 26 25 48 48 H 1.09000 * 109.47385 * 60.00016 * 28 26 25 49 49 H 1.09003 * 109.47166 * 180.02562 * 28 26 25 50 50 H 1.09006 * 109.47167 * 299.99760 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 0.0005 5 8 0.6860 2.7627 0.0006 6 7 2.7817 3.4987 0.0010 7 6 2.3376 4.8948 0.0021 8 6 3.5575 5.8182 0.0031 9 1 4.2041 5.5665 0.8437 10 6 3.0975 7.2722 0.1299 11 6 4.3185 8.1942 0.1640 12 6 5.1012 8.0472 -1.1446 13 7 5.4224 6.6277 -1.3465 14 6 6.7137 6.2291 -1.5676 15 1 7.0314 5.2399 -1.2727 16 6 7.6142 7.0965 -2.1704 17 7 7.1751 8.1510 -2.8245 18 14 9.4493 6.7672 -2.0535 19 1 9.7557 5.4494 -2.6657 20 1 10.1903 7.8330 -2.7748 21 1 9.8605 6.7578 -0.6266 22 6 4.3308 5.6448 -1.3129 23 7 3.5984 0.6789 -0.0059 24 7 3.6299 -0.6083 -0.0009 25 7 2.3105 -1.0825 -0.0005 26 6 1.8864 -2.4848 0.0001 27 6 2.4281 -3.1821 -1.2495 28 6 2.4302 -3.1815 1.2490 29 1 -0.3633 0.0005 -1.0276 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8897 0.5143 32 1 3.7293 3.2912 0.0014 33 1 1.7379 5.0846 0.8922 34 1 1.7375 5.0858 -0.8876 35 1 2.5253 7.3932 1.0497 36 1 2.4712 7.5305 -0.7240 37 1 4.9579 7.9202 1.0031 38 1 3.9914 9.2278 0.2781 39 1 6.0232 8.6256 -1.0860 40 1 4.4963 8.4069 -1.9771 41 1 7.8044 8.7569 -3.2461 42 1 3.6623 5.8119 -2.1575 43 1 4.7443 4.6376 -1.3654 44 1 0.7975 -2.5352 0.0006 45 1 3.5169 -3.1317 -1.2504 46 1 2.1123 -4.2252 -1.2493 47 1 2.0407 -2.6857 -2.1392 48 1 2.0443 -2.6849 2.1393 49 1 2.1150 -4.2250 1.2492 50 1 3.5191 -3.1313 1.2481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023673899.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:46 Heat of formation + Delta-G solvation = 60.415169 kcal Electronic energy + Delta-G solvation = -29223.010702 eV Core-core repulsion = 25287.302612 eV Total energy + Delta-G solvation = -3935.708090 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.43152 -39.37588 -37.68614 -36.73220 -34.81998 -33.26126 -32.89782 -31.32576 -30.37724 -30.17680 -28.07089 -27.89214 -25.52899 -25.18204 -24.21909 -22.91834 -21.98225 -20.86116 -20.61682 -20.05239 -19.00714 -17.79867 -16.81798 -16.43668 -16.36776 -15.74308 -15.09894 -14.98156 -14.74431 -14.40264 -14.16414 -13.93561 -13.74137 -13.51163 -13.42865 -13.36287 -13.31786 -12.81449 -12.72580 -12.71142 -12.27049 -12.19560 -12.14375 -12.11024 -12.04201 -11.73270 -11.25451 -11.17739 -10.95016 -10.64797 -10.44492 -10.38588 -10.19661 -10.13389 -10.02117 -9.84361 -9.51490 -9.36761 -9.29024 -8.80482 -8.40436 -6.60899 -5.73418 -3.16210 0.97818 1.68368 1.77225 3.28807 3.34458 3.43214 3.48133 3.50144 3.87273 4.00202 4.23664 4.34260 4.38169 4.53876 4.62752 4.80544 4.96217 5.02335 5.11889 5.14291 5.16941 5.22363 5.35842 5.39331 5.49749 5.51723 5.54234 5.57008 5.66676 5.67993 5.81211 5.88111 6.01522 6.06112 6.25088 6.30545 6.38632 6.42777 6.57775 6.66476 6.75802 6.84987 6.91531 7.03406 7.45231 7.58892 7.72740 7.85232 7.91423 8.28910 8.50756 9.26995 9.90246 10.47211 11.34879 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013601 B = 0.002633 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.228614 B =10631.793568 C =12270.859611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.120 3.880 3 C -0.104 4.104 4 C 0.603 3.397 5 O -0.546 6.546 6 N -0.706 5.706 7 C 0.128 3.872 8 C -0.118 4.118 9 H 0.074 0.926 10 C -0.099 4.099 11 C -0.141 4.141 12 C 0.169 3.831 13 N -0.591 5.591 14 C -0.252 4.252 15 H 0.065 0.935 16 C 0.002 3.998 17 N -0.903 5.903 18 Si 0.902 3.098 19 H -0.282 1.282 20 H -0.291 1.291 21 H -0.284 1.284 22 C 0.153 3.847 23 N -0.200 5.200 24 N -0.064 5.064 25 N -0.359 5.359 26 C 0.144 3.856 27 C -0.163 4.163 28 C -0.163 4.163 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.411 0.589 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.086 0.914 40 H 0.017 0.983 41 H 0.254 0.746 42 H 0.019 0.981 43 H 0.052 0.948 44 H 0.109 0.891 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.082 0.918 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.528 -20.412 7.608 26.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.018 4.018 3 C -0.244 4.244 4 C 0.388 3.612 5 O -0.424 6.424 6 N -0.357 5.357 7 C 0.005 3.995 8 C -0.139 4.139 9 H 0.093 0.907 10 C -0.137 4.137 11 C -0.181 4.181 12 C 0.043 3.957 13 N -0.313 5.313 14 C -0.382 4.382 15 H 0.083 0.917 16 C -0.196 4.196 17 N -0.548 5.548 18 Si 0.732 3.268 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.210 1.210 22 C 0.026 3.974 23 N -0.073 5.073 24 N -0.043 5.043 25 N -0.146 5.146 26 C 0.043 3.957 27 C -0.221 4.221 28 C -0.221 4.221 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.131 0.869 32 H 0.247 0.753 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.035 0.965 41 H 0.064 0.936 42 H 0.037 0.963 43 H 0.071 0.929 44 H 0.127 0.873 45 H 0.094 0.906 46 H 0.101 0.899 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.101 0.899 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.753 -20.503 7.490 26.346 hybrid contribution 0.489 -0.129 -0.042 0.508 sum -14.263 -20.633 7.448 26.166 Atomic orbital electron populations 1.20710 0.84861 1.05190 1.04607 1.21902 0.96170 0.86418 0.97301 1.21259 0.89076 0.95465 1.18586 1.16706 0.85564 0.82514 0.76455 1.90736 1.15951 1.83735 1.51969 1.45878 1.10491 1.06132 1.73157 1.21514 0.97324 0.78842 1.01864 1.22036 0.95437 0.94555 1.01876 0.90742 1.21335 0.97930 0.94079 1.00350 1.22168 0.96858 0.97230 1.01813 1.20793 0.98399 0.85819 0.90673 1.44046 1.02664 1.01838 1.82782 1.19155 0.85620 1.00589 1.32816 0.91694 1.25041 0.98551 0.98757 0.97273 1.70031 1.33172 1.16050 1.35533 0.86378 0.85455 0.77310 0.77694 1.20855 1.21705 1.21030 1.20999 0.90307 0.93743 0.92320 1.74677 1.18952 1.04131 1.09515 1.81954 0.96158 1.03294 1.22902 1.50649 1.06390 1.07169 1.50384 1.21634 1.00396 0.75366 0.98336 1.22162 1.03367 1.00800 0.95778 1.22165 1.03354 1.00819 0.95770 0.89091 0.90935 0.86905 0.75263 0.91758 0.91339 0.93448 0.92475 0.92747 0.93225 0.89615 0.96471 0.93646 0.96333 0.92948 0.87346 0.90584 0.89935 0.91664 0.91735 0.89936 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.73 9.41 36.01 0.34 -0.39 16 2 C 0.12 1.33 7.02 -81.88 -0.57 0.75 16 3 C -0.10 -1.48 6.99 -83.55 -0.58 -2.06 16 4 C 0.60 9.21 7.82 -12.48 -0.10 9.11 16 5 O -0.55 -8.92 14.72 5.28 0.08 -8.84 16 6 N -0.71 -10.71 5.33 -61.35 -0.33 -11.04 16 7 C 0.13 1.94 5.06 -4.04 -0.02 1.92 16 8 C -0.12 -2.02 2.38 -90.28 -0.22 -2.24 16 9 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 10 C -0.10 -1.65 5.16 -26.69 -0.14 -1.79 16 11 C -0.14 -2.71 6.08 -26.61 -0.16 -2.87 16 12 C 0.17 4.07 5.30 -3.71 -0.02 4.05 16 13 N -0.59 -14.94 2.99 -172.05 -0.51 -15.45 16 14 C -0.25 -7.01 9.58 -15.06 -0.14 -7.16 16 15 H 0.07 1.78 7.89 -52.48 -0.41 1.36 16 16 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 17 N -0.90 -26.58 11.20 55.49 0.62 -25.95 16 18 Si 0.90 22.07 29.59 -169.99 -5.03 17.05 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 C 0.15 3.22 5.63 -3.48 -0.02 3.20 16 23 N -0.20 -3.04 12.04 32.85 0.40 -2.64 16 24 N -0.06 -0.87 13.67 60.35 0.82 -0.04 16 25 N -0.36 -3.65 3.28 -50.40 -0.17 -3.81 16 26 C 0.14 0.84 3.68 -67.93 -0.25 0.59 16 27 C -0.16 -0.86 9.47 37.16 0.35 -0.51 16 28 C -0.16 -0.82 9.47 37.16 0.35 -0.47 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.33 7.18 -51.93 -0.37 -0.04 16 31 H 0.11 1.05 6.43 -51.93 -0.33 0.72 16 32 H 0.41 6.30 7.41 -40.82 -0.30 6.00 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 39 H 0.09 2.31 6.06 -51.93 -0.31 2.00 16 40 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 41 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.05 1.09 7.16 -51.93 -0.37 0.72 16 44 H 0.11 0.37 6.79 -51.92 -0.35 0.01 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 49 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 50 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 399.59 15.07 6.02 6.02 Total: -1.00 -33.11 399.59 -7.73 -40.84 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -8.36 Total: 1.76 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -1.27 Total: 2.11 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: 0.83 Total: -58.94 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.08 Total: -8.84 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.11 -7.73 -40.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023673899.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.253 kcal (2) G-P(sol) polarization free energy of solvation -33.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds