Wall clock time and date at job start Tue Mar 31 2020 18:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36594 * 126.57957 * 2 1 4 4 C 1.47525 * 125.77184 * 0.02562 * 3 2 1 5 5 O 1.21595 * 119.99714 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00096 * 179.97438 * 4 3 2 7 7 C 1.46499 * 120.00141 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.47477 * 179.97438 * 7 6 4 9 9 H 1.09002 * 109.52043 * 305.07684 * 8 7 6 10 10 C 1.53032 * 109.49995 * 184.99769 * 8 7 6 11 11 C 1.53043 * 109.53877 * 178.68217 * 10 8 7 12 12 C 1.53186 * 109.31437 * 61.36566 * 11 10 8 13 13 N 1.46927 * 108.77479 * 305.36434 * 12 11 10 14 14 C 1.36936 * 120.63328 * 233.58439 * 13 12 11 15 15 H 1.08004 * 119.99687 * 151.83020 * 14 13 12 16 16 C 1.38804 * 119.99782 * 331.83092 * 14 13 12 17 17 N 1.31622 * 120.00247 * 343.08514 * 16 14 13 18 18 Si 1.86810 * 119.99877 * 163.08468 * 16 14 13 19 19 H 1.48499 * 109.47137 * 59.99982 * 18 16 14 20 20 H 1.48496 * 109.47053 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46625 * 300.00079 * 18 16 14 22 22 C 1.46933 * 118.73465 * 53.86032 * 13 12 11 23 23 N 1.34398 * 108.46081 * 180.26660 * 3 2 1 24 24 N 1.28768 * 109.51944 * 359.58862 * 23 3 2 25 25 N 1.34812 * 126.58289 * 180.02562 * 2 1 3 26 26 C 1.46501 * 126.59150 * 359.93962 * 25 2 1 27 27 C 1.53005 * 109.47359 * 120.00027 * 26 25 2 28 28 C 1.52996 * 109.47253 * 240.00190 * 26 25 2 29 29 H 1.08998 * 109.47217 * 89.96964 * 1 2 3 30 30 H 1.08998 * 109.46702 * 209.97591 * 1 2 3 31 31 H 1.09000 * 109.47113 * 329.96973 * 1 2 3 32 32 H 0.97002 * 119.99805 * 359.97438 * 6 4 3 33 33 H 1.08995 * 109.47309 * 59.99182 * 7 6 4 34 34 H 1.09002 * 109.46648 * 299.99953 * 7 6 4 35 35 H 1.09003 * 109.46153 * 58.66055 * 10 8 7 36 36 H 1.08997 * 109.44923 * 298.69567 * 10 8 7 37 37 H 1.08996 * 109.49433 * 301.41091 * 11 10 8 38 38 H 1.09007 * 109.52229 * 181.32916 * 11 10 8 39 39 H 1.09001 * 109.59236 * 185.57892 * 12 11 10 40 40 H 1.09008 * 109.70642 * 65.21545 * 12 11 10 41 41 H 0.97001 * 120.00021 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.58974 * 65.93163 * 22 13 12 43 43 H 1.09003 * 109.58500 * 186.35202 * 22 13 12 44 44 H 1.09008 * 109.47354 * 0.02562 * 26 25 2 45 45 H 1.08998 * 109.46793 * 59.99649 * 27 26 25 46 46 H 1.08994 * 109.47575 * 180.02562 * 27 26 25 47 47 H 1.09000 * 109.46923 * 300.00143 * 27 26 25 48 48 H 1.09000 * 109.47385 * 60.00016 * 28 26 25 49 49 H 1.09003 * 109.47166 * 180.02562 * 28 26 25 50 50 H 1.09006 * 109.47167 * 299.99760 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 0.0005 5 8 0.6860 2.7627 0.0006 6 7 2.7817 3.4987 0.0010 7 6 2.3376 4.8948 0.0021 8 6 3.5575 5.8182 0.0031 9 1 4.2041 5.5665 0.8437 10 6 3.0975 7.2722 0.1299 11 6 4.3185 8.1942 0.1640 12 6 5.1012 8.0472 -1.1446 13 7 5.4224 6.6277 -1.3465 14 6 6.7137 6.2291 -1.5676 15 1 7.0314 5.2399 -1.2727 16 6 7.6142 7.0965 -2.1704 17 7 7.1751 8.1510 -2.8245 18 14 9.4493 6.7672 -2.0535 19 1 9.7557 5.4494 -2.6657 20 1 10.1903 7.8330 -2.7748 21 1 9.8605 6.7578 -0.6266 22 6 4.3308 5.6448 -1.3129 23 7 3.5984 0.6789 -0.0059 24 7 3.6299 -0.6083 -0.0009 25 7 2.3105 -1.0825 -0.0005 26 6 1.8864 -2.4848 0.0001 27 6 2.4281 -3.1821 -1.2495 28 6 2.4302 -3.1815 1.2490 29 1 -0.3633 0.0005 -1.0276 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8897 0.5143 32 1 3.7293 3.2912 0.0014 33 1 1.7379 5.0846 0.8922 34 1 1.7375 5.0858 -0.8876 35 1 2.5253 7.3932 1.0497 36 1 2.4712 7.5305 -0.7240 37 1 4.9579 7.9202 1.0031 38 1 3.9914 9.2278 0.2781 39 1 6.0232 8.6256 -1.0860 40 1 4.4963 8.4069 -1.9771 41 1 7.8044 8.7569 -3.2461 42 1 3.6623 5.8119 -2.1575 43 1 4.7443 4.6376 -1.3654 44 1 0.7975 -2.5352 0.0006 45 1 3.5169 -3.1317 -1.2504 46 1 2.1123 -4.2252 -1.2493 47 1 2.0407 -2.6857 -2.1392 48 1 2.0443 -2.6849 2.1393 49 1 2.1150 -4.2250 1.2492 50 1 3.5191 -3.1313 1.2481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023673899.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:44 Heat of formation + Delta-G solvation = 38.391530 kcal Electronic energy + Delta-G solvation = -29223.965718 eV Core-core repulsion = 25287.302612 eV Total energy + Delta-G solvation = -3936.663107 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.34297 -40.59287 -39.26571 -37.37293 -36.28638 -34.69745 -33.97166 -32.41995 -32.26299 -31.50617 -28.92837 -28.28617 -27.26583 -26.77934 -25.02048 -24.06287 -23.68538 -22.35832 -21.55600 -21.07079 -20.50123 -18.83736 -18.51612 -17.44239 -17.29500 -16.93092 -16.81477 -16.31685 -15.76209 -15.51497 -15.35178 -15.23193 -15.01586 -14.91846 -14.50259 -14.28160 -14.06572 -13.96727 -13.93582 -13.72956 -13.52648 -13.24332 -13.20091 -13.01766 -12.96289 -12.85600 -12.53781 -12.48291 -12.40772 -12.30294 -11.97963 -11.93234 -11.81486 -11.56597 -11.37076 -11.15874 -11.10769 -11.01143 -10.52639 -10.31607 -9.95248 -8.66516 -7.86919 -5.32858 0.12095 0.60980 1.05967 1.46038 1.48165 1.55087 2.16287 2.23039 2.51031 3.16652 3.27087 3.31333 3.55197 3.61035 3.73412 3.80365 3.97249 4.00029 4.02727 4.08477 4.12599 4.43343 4.50492 4.58447 4.61108 4.62236 4.62974 4.66507 4.72410 4.74647 4.78012 4.85629 4.90218 4.91779 5.02194 5.11955 5.12782 5.17477 5.22468 5.24666 5.35084 5.40039 5.47724 5.57412 5.58906 5.67608 5.80260 6.38713 6.42159 6.90225 7.12537 7.15721 7.86967 8.38483 9.18795 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013601 B = 0.002633 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.228614 B =10631.793568 C =12270.859611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.132 3.868 3 C -0.135 4.135 4 C 0.604 3.396 5 O -0.559 6.559 6 N -0.710 5.710 7 C 0.139 3.861 8 C -0.102 4.102 9 H 0.072 0.928 10 C -0.095 4.095 11 C -0.130 4.130 12 C 0.172 3.828 13 N -0.609 5.609 14 C -0.264 4.264 15 H 0.064 0.936 16 C -0.050 4.050 17 N -0.935 5.935 18 Si 0.966 3.034 19 H -0.277 1.277 20 H -0.293 1.293 21 H -0.277 1.277 22 C 0.153 3.847 23 N -0.230 5.230 24 N -0.088 5.088 25 N -0.345 5.345 26 C 0.131 3.869 27 C -0.160 4.160 28 C -0.160 4.160 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.409 0.591 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.072 0.928 39 H 0.051 0.949 40 H -0.005 1.005 41 H 0.250 0.750 42 H 0.009 0.991 43 H 0.046 0.954 44 H 0.145 0.855 45 H 0.053 0.947 46 H 0.114 0.886 47 H 0.057 0.943 48 H 0.060 0.940 49 H 0.114 0.886 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.655 -22.592 8.989 30.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.008 4.008 3 C -0.275 4.275 4 C 0.389 3.611 5 O -0.438 6.438 6 N -0.360 5.360 7 C 0.015 3.985 8 C -0.122 4.122 9 H 0.090 0.910 10 C -0.133 4.133 11 C -0.169 4.169 12 C 0.047 3.953 13 N -0.333 5.333 14 C -0.394 4.394 15 H 0.082 0.918 16 C -0.246 4.246 17 N -0.581 5.581 18 Si 0.794 3.206 19 H -0.203 1.203 20 H -0.219 1.219 21 H -0.203 1.203 22 C 0.027 3.973 23 N -0.103 5.103 24 N -0.068 5.068 25 N -0.132 5.132 26 C 0.032 3.968 27 C -0.218 4.218 28 C -0.217 4.217 29 H 0.122 0.878 30 H 0.129 0.871 31 H 0.116 0.884 32 H 0.245 0.755 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.013 0.987 41 H 0.059 0.941 42 H 0.027 0.973 43 H 0.065 0.935 44 H 0.163 0.837 45 H 0.073 0.927 46 H 0.132 0.868 47 H 0.076 0.924 48 H 0.079 0.921 49 H 0.132 0.868 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.889 -22.726 8.889 29.677 hybrid contribution 1.079 0.424 -0.509 1.266 sum -15.810 -22.302 8.380 28.593 Atomic orbital electron populations 1.20848 0.82131 1.06362 1.05716 1.22396 0.97543 0.85685 0.95150 1.21326 0.89560 0.95714 1.20852 1.16850 0.85317 0.82994 0.75908 1.90717 1.16253 1.84106 1.52729 1.45906 1.10448 1.06277 1.73376 1.21381 0.96139 0.78436 1.02525 1.21799 0.95664 0.95772 0.98970 0.91005 1.21329 0.96984 0.92643 1.02320 1.22001 0.97197 0.99423 0.98306 1.20652 0.97113 0.84891 0.92646 1.44313 1.02959 1.02915 1.83075 1.19467 0.87144 1.00591 1.32194 0.91844 1.25788 1.02555 0.98843 0.97365 1.70185 1.34196 1.16994 1.36689 0.85370 0.80469 0.77059 0.77741 1.20301 1.21871 1.20343 1.21092 0.89410 0.92491 0.94301 1.74639 1.20006 1.05015 1.10653 1.81849 0.98292 1.02829 1.23804 1.51001 1.05128 1.08601 1.48510 1.22215 1.02529 0.73058 0.98953 1.22171 1.01935 1.02581 0.95126 1.22171 1.01955 1.02558 0.95058 0.87773 0.87055 0.88400 0.75548 0.89996 0.91646 0.89781 0.92254 0.93058 0.90946 0.93073 0.98712 0.94107 0.97335 0.93504 0.83720 0.92747 0.86753 0.92388 0.92128 0.86795 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.15 9.41 71.24 0.67 -0.48 16 2 C 0.13 2.72 7.02 41.72 0.29 3.01 16 3 C -0.13 -3.78 6.99 40.82 0.29 -3.50 16 4 C 0.60 18.24 7.82 86.69 0.68 18.91 16 5 O -0.56 -17.72 14.72 -4.02 -0.06 -17.78 16 6 N -0.71 -21.40 5.33 -466.28 -2.48 -23.88 16 7 C 0.14 4.01 5.06 86.38 0.44 4.45 16 8 C -0.10 -3.38 2.38 -10.57 -0.03 -3.40 16 9 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 10 C -0.09 -2.97 5.16 30.62 0.16 -2.81 16 11 C -0.13 -4.86 6.08 30.67 0.19 -4.67 16 12 C 0.17 8.53 5.30 86.36 0.46 8.99 16 13 N -0.61 -31.58 2.99 -698.24 -2.09 -33.66 16 14 C -0.26 -15.03 9.58 84.03 0.81 -14.23 16 15 H 0.06 3.55 7.89 -2.91 -0.02 3.53 16 16 C -0.05 -2.89 4.92 84.86 0.42 -2.47 16 17 N -0.93 -56.81 11.20 21.65 0.24 -56.57 16 18 Si 0.97 46.35 29.59 68.60 2.03 48.38 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 20 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 22 C 0.15 6.53 5.63 86.51 0.49 7.02 16 23 N -0.23 -7.18 12.04 -50.00 -0.60 -7.78 16 24 N -0.09 -2.43 13.67 37.02 0.51 -1.92 16 25 N -0.35 -6.55 3.28 -313.38 -1.03 -7.58 16 26 C 0.13 1.18 3.68 44.99 0.17 1.34 16 27 C -0.16 -1.34 9.47 71.98 0.68 -0.66 16 28 C -0.16 -1.22 9.47 71.98 0.68 -0.54 16 29 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.11 0.51 7.18 -2.39 -0.02 0.49 16 31 H 0.10 1.62 6.43 -2.39 -0.02 1.61 16 32 H 0.41 12.77 7.41 -92.71 -0.69 12.09 16 33 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 39 H 0.05 2.86 6.06 -2.39 -0.01 2.85 16 40 H -0.01 -0.28 8.14 -2.38 -0.02 -0.29 16 41 H 0.25 14.71 8.31 -92.71 -0.77 13.93 16 42 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.05 2.01 7.16 -2.39 -0.02 2.00 16 44 H 0.15 0.29 6.79 -2.38 -0.02 0.27 16 45 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 47 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 49 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 50 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 Total: -1.00 -75.36 399.59 3.15 -72.22 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.25 Total: 17.62 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 6.38 Total: 10.96 kcal Atomic # 7 Polarization: -125.94 SS G_CDS: -5.45 Total: -131.39 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.06 Total: -17.78 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -75.36 3.15 -72.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023673899.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.608 kcal (2) G-P(sol) polarization free energy of solvation -75.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds