Wall clock time and date at job start Tue Mar 31 2020 20:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.46924 * 2 1 4 4 C 1.36596 * 126.57475 * 270.02134 * 3 2 1 5 5 C 1.47528 * 125.77485 * 0.03551 * 4 3 2 6 6 O 1.21593 * 119.99471 * 359.71898 * 5 4 3 7 7 N 1.34774 * 120.00315 * 179.71713 * 5 4 3 8 8 C 1.46497 * 120.00052 * 180.02562 * 7 5 4 9 9 C 1.52995 * 109.47271 * 180.02562 * 8 7 5 10 10 H 1.08996 * 109.70230 * 60.21062 * 9 8 7 11 11 C 1.53625 * 109.66712 * 180.80188 * 9 8 7 12 12 C 1.53036 * 109.24496 * 174.54475 * 11 9 8 13 13 C 1.53043 * 109.53769 * 298.51712 * 12 11 9 14 14 C 1.53191 * 109.31653 * 61.36334 * 13 12 11 15 15 N 1.46925 * 108.77172 * 305.36353 * 14 13 12 16 16 C 1.36934 * 120.63091 * 233.58388 * 15 14 13 17 17 H 1.08000 * 119.99978 * 148.63724 * 16 15 14 18 18 C 1.38813 * 119.99741 * 328.91486 * 16 15 14 19 19 N 1.31618 * 120.00435 * 348.59264 * 18 16 15 20 20 Si 1.86807 * 119.99832 * 168.59574 * 18 16 15 21 21 H 1.48499 * 109.46845 * 89.99708 * 20 18 16 22 22 H 1.48494 * 109.47081 * 209.99768 * 20 18 16 23 23 H 1.48498 * 109.46894 * 329.99975 * 20 18 16 24 24 N 1.34404 * 108.46012 * 179.77653 * 4 3 2 25 25 N 1.28762 * 109.51925 * 0.22542 * 24 4 3 26 26 N 1.34814 * 126.58455 * 90.18969 * 3 2 1 27 27 C 1.46497 * 126.59612 * 359.96258 * 26 3 2 28 28 C 1.52994 * 109.47205 * 270.27902 * 27 26 3 29 29 H 1.09005 * 109.47470 * 300.00301 * 1 2 3 30 30 H 1.08995 * 109.47076 * 60.00589 * 1 2 3 31 31 H 1.09003 * 109.46893 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47115 * 239.99326 * 2 1 3 33 33 H 1.09009 * 109.46988 * 119.99443 * 2 1 3 34 34 H 0.96995 * 119.99864 * 0.02562 * 7 5 4 35 35 H 1.08994 * 109.47432 * 59.99505 * 8 7 5 36 36 H 1.09002 * 109.47083 * 299.99912 * 8 7 5 37 37 H 1.09010 * 109.63046 * 54.55441 * 11 9 8 38 38 H 1.08993 * 109.45688 * 294.43410 * 11 9 8 39 39 H 1.08997 * 109.46418 * 178.49163 * 12 11 9 40 40 H 1.09000 * 109.44732 * 58.52357 * 12 11 9 41 41 H 1.09004 * 109.49748 * 301.40584 * 13 12 11 42 42 H 1.09003 * 109.51775 * 181.32989 * 13 12 11 43 43 H 1.08999 * 109.58685 * 185.57468 * 14 13 12 44 44 H 1.08999 * 109.70149 * 65.21947 * 14 13 12 45 45 H 0.96992 * 120.00205 * 180.02562 * 19 18 16 46 46 H 1.09006 * 109.46728 * 30.28040 * 27 26 3 47 47 H 1.09000 * 109.47121 * 150.27274 * 27 26 3 48 48 H 1.09000 * 109.47593 * 59.99662 * 28 27 26 49 49 H 1.09003 * 109.46847 * 179.97438 * 28 27 26 50 50 H 1.08999 * 109.47036 * 299.99939 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3032 2.1883 -1.0970 5 6 2.1529 1.7670 -2.5028 6 8 1.7611 0.6457 -2.7628 7 7 2.4498 2.6250 -3.4989 8 6 2.3000 2.2067 -4.8949 9 6 2.7005 3.3590 -5.8183 10 1 3.7398 3.6319 -5.6357 11 6 2.5260 2.9318 -7.2836 12 6 2.7977 4.1312 -8.1944 13 6 1.7884 5.2416 -7.8932 14 6 1.9507 5.6928 -6.4383 15 7 1.8346 4.5183 -5.5632 16 6 0.9405 4.5065 -4.5262 17 1 0.4838 3.5778 -4.2175 18 6 0.6169 5.6892 -3.8754 19 7 1.3245 6.7768 -4.0962 20 14 -0.8229 5.7371 -2.6861 21 1 -0.3469 5.4055 -1.3191 22 1 -1.4199 7.0967 -2.6862 23 1 -1.8462 4.7470 -3.1077 24 7 2.7244 3.3943 -0.6791 25 7 2.7370 3.4234 0.6081 26 7 2.3035 2.1772 1.0825 27 6 2.1658 1.7762 2.4848 28 6 0.7560 2.1118 2.9752 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.7626 3.5194 -3.2915 35 1 1.2617 1.9339 -5.0830 36 1 2.9421 1.3472 -5.0875 37 1 1.5075 2.5773 -7.4429 38 1 3.2298 2.1324 -7.5150 39 1 2.7010 3.8255 -9.2362 40 1 3.8076 4.5006 -8.0166 41 1 0.7770 4.8655 -8.0468 42 1 1.9673 6.0865 -8.5583 43 1 1.1706 6.4123 -6.1896 44 1 2.9292 6.1537 -6.3034 45 1 1.0985 7.6031 -3.6412 46 1 2.3359 0.7032 2.5742 47 1 2.8979 2.3117 3.0893 48 1 0.0239 1.5763 2.3707 49 1 0.6535 1.8130 4.0184 50 1 0.5860 3.1847 2.8857 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024648923.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:11 Heat of formation + Delta-G solvation = 68.233826 kcal Electronic energy + Delta-G solvation = -30858.423705 eV Core-core repulsion = 26923.054657 eV Total energy + Delta-G solvation = -3935.369048 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.03710 -38.92766 -37.54530 -35.77274 -34.22542 -33.61172 -32.96011 -30.97563 -30.44530 -29.82511 -29.42826 -26.08093 -24.98129 -24.39017 -23.91280 -22.72607 -22.03386 -20.71368 -20.10309 -19.81056 -19.03843 -17.67131 -16.54364 -16.07221 -15.61900 -15.44383 -15.28563 -14.82273 -14.60562 -14.17237 -13.95569 -13.92375 -13.67139 -13.38714 -13.26387 -13.02053 -12.74721 -12.69602 -12.47406 -12.36355 -12.28265 -11.94478 -11.84178 -11.66841 -11.33075 -11.13928 -11.07554 -10.86263 -10.73371 -10.67102 -10.46939 -10.22866 -10.07111 -10.05933 -9.91133 -9.56523 -9.40615 -9.24370 -8.89177 -8.47058 -8.10420 -6.54360 -5.73409 -3.20056 1.34171 2.15218 2.16557 3.41428 3.48565 3.49576 3.78114 3.91493 4.29049 4.30676 4.53544 4.59536 4.68784 4.80945 4.97111 5.13379 5.19380 5.19840 5.32264 5.41114 5.42954 5.46921 5.59816 5.66102 5.71172 5.74859 5.75684 5.78999 6.01784 6.05429 6.11337 6.19543 6.21802 6.22775 6.39831 6.42199 6.47692 6.57914 6.65499 6.78479 6.80319 6.93270 7.05285 7.23903 7.47551 7.76512 7.88919 8.16382 8.45160 8.51849 8.89587 9.27408 9.88277 10.45843 11.33807 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013821 B = 0.004137 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.487301 B = 6765.778580 C = 7826.307505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.060 4.060 3 C 0.115 3.885 4 C -0.092 4.092 5 C 0.595 3.405 6 O -0.562 6.562 7 N -0.675 5.675 8 C 0.135 3.865 9 C 0.159 3.841 10 H 0.032 0.968 11 C -0.126 4.126 12 C -0.107 4.107 13 C -0.144 4.144 14 C 0.173 3.827 15 N -0.588 5.588 16 C -0.251 4.251 17 H 0.068 0.932 18 C 0.016 3.984 19 N -0.898 5.898 20 Si 0.890 3.110 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.281 1.281 24 N -0.186 5.186 25 N -0.074 5.074 26 N -0.367 5.367 27 C 0.119 3.881 28 C -0.175 4.175 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.423 0.577 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.050 0.950 39 H 0.043 0.957 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.045 0.955 43 H 0.087 0.913 44 H 0.017 0.983 45 H 0.253 0.747 46 H 0.098 0.902 47 H 0.104 0.896 48 H 0.067 0.933 49 H 0.081 0.919 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.926 -12.253 8.543 15.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.099 4.099 3 C -0.023 4.023 4 C -0.231 4.231 5 C 0.379 3.621 6 O -0.442 6.442 7 N -0.325 5.325 8 C 0.011 3.989 9 C 0.052 3.948 10 H 0.050 0.950 11 C -0.166 4.166 12 C -0.145 4.145 13 C -0.183 4.183 14 C 0.047 3.953 15 N -0.312 5.312 16 C -0.380 4.380 17 H 0.086 0.914 18 C -0.184 4.184 19 N -0.541 5.541 20 Si 0.720 3.280 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.207 1.207 24 N -0.059 5.059 25 N -0.053 5.053 26 N -0.153 5.153 27 C -0.002 4.002 28 C -0.233 4.233 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.135 0.865 33 H 0.091 0.909 34 H 0.262 0.738 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.106 0.894 44 H 0.036 0.964 45 H 0.063 0.937 46 H 0.116 0.884 47 H 0.122 0.878 48 H 0.086 0.914 49 H 0.100 0.900 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.140 -11.414 8.849 14.600 hybrid contribution -1.003 -0.167 0.738 1.256 sum 1.137 -11.581 9.587 15.078 Atomic orbital electron populations 1.21733 0.93374 1.02503 1.02578 1.20409 0.97135 0.87490 1.04874 1.21866 0.97590 0.96267 0.86529 1.21370 1.14192 0.91818 0.95770 1.16703 0.78191 0.84659 0.82585 1.90679 1.49478 1.20308 1.83775 1.45862 1.64156 1.17294 1.05167 1.21323 1.01358 0.96164 0.80020 1.20826 0.94119 0.88298 0.91566 0.95012 1.22007 1.01024 0.96971 0.96594 1.21361 0.99340 0.96360 0.97440 1.22201 0.98411 0.97048 1.00653 1.20784 1.00301 0.89559 0.84635 1.44071 1.41657 1.13065 1.32428 1.19107 1.16580 0.94210 1.08113 0.91435 1.25009 0.98578 0.97026 0.97767 1.69957 1.38975 1.00712 1.44502 0.86478 0.82887 0.76792 0.81863 1.21239 1.21655 1.20697 1.74747 1.10101 1.17453 1.03585 1.82004 1.20771 0.98676 1.03851 1.50479 1.46208 1.11419 1.07162 1.21883 0.99946 1.01678 0.76720 1.22267 0.95144 1.03751 1.02113 0.93158 0.91269 0.91357 0.86530 0.90880 0.73754 0.91383 0.92472 0.92083 0.93116 0.93814 0.92909 0.92890 0.93634 0.89442 0.96449 0.93651 0.88355 0.87792 0.91419 0.89976 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.89 37.16 0.37 -1.25 16 2 C -0.06 -0.70 5.63 -27.88 -0.16 -0.86 16 3 C 0.12 1.76 6.27 -81.88 -0.51 1.25 16 4 C -0.09 -1.76 6.99 -83.55 -0.58 -2.35 16 5 C 0.59 12.04 7.82 -12.47 -0.10 11.94 16 6 O -0.56 -11.44 14.72 5.28 0.08 -11.36 16 7 N -0.68 -14.08 3.84 -61.36 -0.24 -14.32 16 8 C 0.14 2.63 4.44 -4.05 -0.02 2.61 16 9 C 0.16 3.18 3.03 -67.37 -0.20 2.98 16 10 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 11 C -0.13 -2.16 5.40 -26.39 -0.14 -2.31 16 12 C -0.11 -1.81 5.88 -26.69 -0.16 -1.96 16 13 C -0.14 -2.74 6.08 -26.61 -0.16 -2.91 16 14 C 0.17 4.03 5.25 -3.71 -0.02 4.01 16 15 N -0.59 -13.96 2.97 -164.52 -0.49 -14.45 16 16 C -0.25 -6.54 6.96 -15.06 -0.10 -6.64 16 17 H 0.07 1.81 5.87 -52.49 -0.31 1.50 16 18 C 0.02 0.43 5.03 -17.43 -0.09 0.34 16 19 N -0.90 -25.56 11.07 55.49 0.61 -24.95 16 20 Si 0.89 22.53 29.57 -169.99 -5.03 17.51 16 21 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 24 N -0.19 -3.88 12.04 32.85 0.40 -3.48 16 25 N -0.07 -1.37 13.78 60.35 0.83 -0.54 16 26 N -0.37 -5.20 3.63 -56.85 -0.21 -5.41 16 27 C 0.12 1.02 7.02 -4.05 -0.03 0.99 16 28 C -0.17 -1.39 10.24 37.15 0.38 -1.01 16 29 H 0.05 0.50 6.12 -51.93 -0.32 0.19 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.12 1.54 6.42 -51.93 -0.33 1.20 16 33 H 0.07 0.60 7.18 -51.92 -0.37 0.23 16 34 H 0.42 9.70 7.07 -40.82 -0.29 9.42 16 35 H 0.07 1.42 7.42 -51.93 -0.39 1.03 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.09 2.30 6.11 -51.93 -0.32 1.98 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 46 H 0.10 0.57 7.16 -51.93 -0.37 0.19 16 47 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.07 0.57 6.12 -51.93 -0.32 0.26 16 49 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 390.65 15.07 5.89 5.89 Total: -1.00 -31.61 390.65 -7.75 -39.36 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -8.07 Total: 6.90 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -1.53 Total: 4.85 kcal Atomic # 7 Polarization: -64.05 SS G_CDS: 0.91 Total: -63.14 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.08 Total: -11.36 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.03 Total: 17.51 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.61 -7.75 -39.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024648923.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.590 kcal (2) G-P(sol) polarization free energy of solvation -31.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds