Wall clock time and date at job start Tue Mar 31 2020 20:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.46924 * 2 1 4 4 C 1.36596 * 126.57475 * 270.02134 * 3 2 1 5 5 C 1.47528 * 125.77485 * 0.03551 * 4 3 2 6 6 O 1.21593 * 119.99471 * 359.71898 * 5 4 3 7 7 N 1.34774 * 120.00315 * 179.71713 * 5 4 3 8 8 C 1.46497 * 120.00052 * 180.02562 * 7 5 4 9 9 C 1.52995 * 109.47271 * 180.02562 * 8 7 5 10 10 H 1.08996 * 109.70230 * 60.21062 * 9 8 7 11 11 C 1.53625 * 109.66712 * 180.80188 * 9 8 7 12 12 C 1.53036 * 109.24496 * 174.54475 * 11 9 8 13 13 C 1.53043 * 109.53769 * 298.51712 * 12 11 9 14 14 C 1.53191 * 109.31653 * 61.36334 * 13 12 11 15 15 N 1.46925 * 108.77172 * 305.36353 * 14 13 12 16 16 C 1.36934 * 120.63091 * 233.58388 * 15 14 13 17 17 H 1.08000 * 119.99978 * 148.63724 * 16 15 14 18 18 C 1.38813 * 119.99741 * 328.91486 * 16 15 14 19 19 N 1.31618 * 120.00435 * 348.59264 * 18 16 15 20 20 Si 1.86807 * 119.99832 * 168.59574 * 18 16 15 21 21 H 1.48499 * 109.46845 * 89.99708 * 20 18 16 22 22 H 1.48494 * 109.47081 * 209.99768 * 20 18 16 23 23 H 1.48498 * 109.46894 * 329.99975 * 20 18 16 24 24 N 1.34404 * 108.46012 * 179.77653 * 4 3 2 25 25 N 1.28762 * 109.51925 * 0.22542 * 24 4 3 26 26 N 1.34814 * 126.58455 * 90.18969 * 3 2 1 27 27 C 1.46497 * 126.59612 * 359.96258 * 26 3 2 28 28 C 1.52994 * 109.47205 * 270.27902 * 27 26 3 29 29 H 1.09005 * 109.47470 * 300.00301 * 1 2 3 30 30 H 1.08995 * 109.47076 * 60.00589 * 1 2 3 31 31 H 1.09003 * 109.46893 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47115 * 239.99326 * 2 1 3 33 33 H 1.09009 * 109.46988 * 119.99443 * 2 1 3 34 34 H 0.96995 * 119.99864 * 0.02562 * 7 5 4 35 35 H 1.08994 * 109.47432 * 59.99505 * 8 7 5 36 36 H 1.09002 * 109.47083 * 299.99912 * 8 7 5 37 37 H 1.09010 * 109.63046 * 54.55441 * 11 9 8 38 38 H 1.08993 * 109.45688 * 294.43410 * 11 9 8 39 39 H 1.08997 * 109.46418 * 178.49163 * 12 11 9 40 40 H 1.09000 * 109.44732 * 58.52357 * 12 11 9 41 41 H 1.09004 * 109.49748 * 301.40584 * 13 12 11 42 42 H 1.09003 * 109.51775 * 181.32989 * 13 12 11 43 43 H 1.08999 * 109.58685 * 185.57468 * 14 13 12 44 44 H 1.08999 * 109.70149 * 65.21947 * 14 13 12 45 45 H 0.96992 * 120.00205 * 180.02562 * 19 18 16 46 46 H 1.09006 * 109.46728 * 30.28040 * 27 26 3 47 47 H 1.09000 * 109.47121 * 150.27274 * 27 26 3 48 48 H 1.09000 * 109.47593 * 59.99662 * 28 27 26 49 49 H 1.09003 * 109.46847 * 179.97438 * 28 27 26 50 50 H 1.08999 * 109.47036 * 299.99939 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3032 2.1883 -1.0970 5 6 2.1529 1.7670 -2.5028 6 8 1.7611 0.6457 -2.7628 7 7 2.4498 2.6250 -3.4989 8 6 2.3000 2.2067 -4.8949 9 6 2.7005 3.3590 -5.8183 10 1 3.7398 3.6319 -5.6357 11 6 2.5260 2.9318 -7.2836 12 6 2.7977 4.1312 -8.1944 13 6 1.7884 5.2416 -7.8932 14 6 1.9507 5.6928 -6.4383 15 7 1.8346 4.5183 -5.5632 16 6 0.9405 4.5065 -4.5262 17 1 0.4838 3.5778 -4.2175 18 6 0.6169 5.6892 -3.8754 19 7 1.3245 6.7768 -4.0962 20 14 -0.8229 5.7371 -2.6861 21 1 -0.3469 5.4055 -1.3191 22 1 -1.4199 7.0967 -2.6862 23 1 -1.8462 4.7470 -3.1077 24 7 2.7244 3.3943 -0.6791 25 7 2.7370 3.4234 0.6081 26 7 2.3035 2.1772 1.0825 27 6 2.1658 1.7762 2.4848 28 6 0.7560 2.1118 2.9752 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.7626 3.5194 -3.2915 35 1 1.2617 1.9339 -5.0830 36 1 2.9421 1.3472 -5.0875 37 1 1.5075 2.5773 -7.4429 38 1 3.2298 2.1324 -7.5150 39 1 2.7010 3.8255 -9.2362 40 1 3.8076 4.5006 -8.0166 41 1 0.7770 4.8655 -8.0468 42 1 1.9673 6.0865 -8.5583 43 1 1.1706 6.4123 -6.1896 44 1 2.9292 6.1537 -6.3034 45 1 1.0985 7.6031 -3.6412 46 1 2.3359 0.7032 2.5742 47 1 2.8979 2.3117 3.0893 48 1 0.0239 1.5763 2.3707 49 1 0.6535 1.8130 4.0184 50 1 0.5860 3.1847 2.8857 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024648923.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:10 Heat of formation + Delta-G solvation = 47.448107 kcal Electronic energy + Delta-G solvation = -30859.325041 eV Core-core repulsion = 26923.054657 eV Total energy + Delta-G solvation = -3936.270384 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.32044 -40.52143 -39.18877 -36.83799 -35.69514 -34.89382 -34.67654 -32.48958 -31.68344 -31.47357 -30.73262 -27.74158 -26.65198 -25.46568 -24.97049 -24.11047 -23.72742 -22.26389 -21.35623 -21.16130 -20.67006 -19.11378 -18.15839 -17.53564 -17.14875 -16.93721 -16.73686 -16.05896 -15.80626 -15.74905 -15.53253 -15.24290 -14.92244 -14.79337 -14.72253 -14.50275 -14.07263 -13.94165 -13.75448 -13.58152 -13.43157 -13.37989 -13.15510 -12.89378 -12.82137 -12.74137 -12.54897 -12.33681 -12.31949 -12.05740 -11.96093 -11.88353 -11.78079 -11.50496 -11.22491 -11.15264 -11.07721 -10.86574 -10.51800 -10.24968 -9.75235 -8.52665 -7.83167 -5.28933 0.12817 0.67913 1.13251 1.32524 1.37683 1.41253 2.26405 2.41847 2.47580 3.19944 3.34005 3.44643 3.54587 3.61517 3.77176 3.92624 4.02523 4.10293 4.20799 4.25168 4.28335 4.29605 4.43869 4.46191 4.49361 4.57492 4.63680 4.68422 4.73272 4.82480 4.85275 4.90161 4.95019 5.02823 5.07600 5.16619 5.19987 5.25118 5.31576 5.35252 5.41154 5.49832 5.55340 5.64237 5.66771 5.75973 5.88299 6.45626 6.61749 6.97328 7.21498 7.27825 7.90622 8.42526 9.21529 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013821 B = 0.004137 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.487301 B = 6765.778580 C = 7826.307505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.056 4.056 3 C 0.132 3.868 4 C -0.129 4.129 5 C 0.594 3.406 6 O -0.567 6.567 7 N -0.686 5.686 8 C 0.140 3.860 9 C 0.156 3.844 10 H 0.028 0.972 11 C -0.119 4.119 12 C -0.103 4.103 13 C -0.134 4.134 14 C 0.177 3.823 15 N -0.602 5.602 16 C -0.227 4.227 17 H 0.060 0.940 18 C -0.030 4.030 19 N -0.924 5.924 20 Si 0.932 3.068 21 H -0.302 1.302 22 H -0.291 1.291 23 H -0.277 1.277 24 N -0.230 5.230 25 N -0.102 5.102 26 N -0.349 5.349 27 C 0.103 3.897 28 C -0.171 4.171 29 H 0.063 0.937 30 H 0.029 0.971 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.122 0.878 34 H 0.411 0.589 35 H 0.052 0.948 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.047 0.953 42 H 0.063 0.937 43 H 0.052 0.948 44 H -0.003 1.003 45 H 0.246 0.754 46 H 0.141 0.859 47 H 0.118 0.882 48 H 0.063 0.937 49 H 0.119 0.881 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.060 -15.406 9.157 18.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.096 4.096 3 C -0.008 4.008 4 C -0.270 4.270 5 C 0.378 3.622 6 O -0.448 6.448 7 N -0.334 5.334 8 C 0.016 3.984 9 C 0.050 3.950 10 H 0.046 0.954 11 C -0.158 4.158 12 C -0.141 4.141 13 C -0.173 4.173 14 C 0.051 3.949 15 N -0.327 5.327 16 C -0.357 4.357 17 H 0.078 0.922 18 C -0.226 4.226 19 N -0.571 5.571 20 Si 0.763 3.237 21 H -0.230 1.230 22 H -0.217 1.217 23 H -0.203 1.203 24 N -0.102 5.102 25 N -0.081 5.081 26 N -0.135 5.135 27 C -0.015 4.015 28 C -0.229 4.229 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.140 0.860 34 H 0.248 0.752 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.015 0.985 45 H 0.055 0.945 46 H 0.159 0.841 47 H 0.137 0.863 48 H 0.082 0.918 49 H 0.137 0.863 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.270 -14.591 9.468 17.541 hybrid contribution -1.029 0.694 0.660 1.406 sum 1.240 -13.897 10.128 17.241 Atomic orbital electron populations 1.21731 0.92875 1.03968 1.01327 1.20590 0.97306 0.85071 1.06584 1.22386 0.95454 0.97313 0.85621 1.21499 1.16638 0.92562 0.96269 1.16901 0.77642 0.84494 0.83125 1.90652 1.49720 1.20301 1.84126 1.45946 1.64667 1.16830 1.05973 1.21352 1.00890 0.96700 0.79442 1.21023 0.92954 0.86991 0.93987 0.95442 1.21946 1.01840 0.98117 0.93918 1.21352 0.98438 0.95073 0.99189 1.22041 0.99055 0.98723 0.97477 1.20606 0.97799 0.88977 0.87497 1.44284 1.42097 1.14220 1.32050 1.19115 1.15766 0.93357 1.07508 0.92212 1.25421 1.00404 0.97344 0.99424 1.70069 1.40355 1.00796 1.45845 0.85806 0.81459 0.76537 0.79886 1.23019 1.21703 1.20255 1.74705 1.11739 1.18901 1.04823 1.81856 1.21999 1.01024 1.03177 1.50873 1.43887 1.09754 1.08968 1.22559 1.00885 1.04431 0.73668 1.22278 0.94378 1.01907 1.04328 0.91762 0.95193 0.88520 0.87911 0.86002 0.75213 0.92918 0.90004 0.92437 0.89722 0.90496 0.92664 0.93426 0.91812 0.92984 0.98520 0.94484 0.84118 0.86348 0.91773 0.86252 0.93972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.89 71.98 0.71 -2.13 16 2 C -0.06 -1.16 5.63 29.85 0.17 -0.99 16 3 C 0.13 3.90 6.27 41.72 0.26 4.16 16 4 C -0.13 -5.08 6.99 40.82 0.29 -4.79 16 5 C 0.59 24.60 7.82 86.69 0.68 25.27 16 6 O -0.57 -23.17 14.72 -4.01 -0.06 -23.22 16 7 N -0.69 -29.48 3.84 -466.29 -1.79 -31.27 16 8 C 0.14 5.41 4.44 86.38 0.38 5.80 16 9 C 0.16 6.19 3.03 45.12 0.14 6.33 16 10 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 11 C -0.12 -3.77 5.40 30.82 0.17 -3.60 16 12 C -0.10 -3.17 5.88 30.62 0.18 -2.99 16 13 C -0.13 -4.95 6.08 30.67 0.19 -4.76 16 14 C 0.18 8.44 5.25 86.36 0.45 8.89 16 15 N -0.60 -29.14 2.97 -674.43 -2.00 -31.15 16 16 C -0.23 -12.21 6.96 84.03 0.58 -11.63 16 17 H 0.06 3.31 5.87 -2.91 -0.02 3.29 16 18 C -0.03 -1.69 5.03 84.86 0.43 -1.27 16 19 N -0.92 -55.17 11.07 21.65 0.24 -54.93 16 20 Si 0.93 48.29 29.57 68.60 2.03 50.32 16 21 H -0.30 -16.34 7.11 99.48 0.71 -15.64 16 22 H -0.29 -14.93 7.11 99.48 0.71 -14.22 16 23 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 24 N -0.23 -10.00 12.04 -49.99 -0.60 -10.60 16 25 N -0.10 -3.84 13.78 37.02 0.51 -3.33 16 26 N -0.35 -9.45 3.63 -333.79 -1.21 -10.66 16 27 C 0.10 1.43 7.02 86.38 0.61 2.04 16 28 C -0.17 -2.23 10.24 71.98 0.74 -1.49 16 29 H 0.06 1.10 6.12 -2.38 -0.01 1.09 16 30 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.10 2.51 6.42 -2.39 -0.02 2.49 16 33 H 0.12 1.35 7.18 -2.38 -0.02 1.33 16 34 H 0.41 19.81 7.07 -92.71 -0.66 19.15 16 35 H 0.05 2.20 7.42 -2.39 -0.02 2.18 16 36 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.05 2.85 6.11 -2.39 -0.01 2.83 16 44 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 45 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 46 H 0.14 0.84 7.16 -2.38 -0.02 0.82 16 47 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 48 H 0.06 0.90 6.12 -2.39 -0.01 0.88 16 49 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -74.51 390.65 3.37 -71.14 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.29 Total: 24.87 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: 5.97 Total: 18.83 kcal Atomic # 7 Polarization: -137.08 SS G_CDS: -4.86 Total: -141.94 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.06 Total: -23.22 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 2.03 Total: 50.32 kcal Total: -74.51 3.37 -71.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024648923.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.589 kcal (2) G-P(sol) polarization free energy of solvation -74.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds