Wall clock time and date at job start Tue Mar 31 2020 18:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36600 * 126.58006 * 2 1 4 4 C 1.47520 * 125.76679 * 359.97438 * 3 2 1 5 5 O 1.21591 * 120.00450 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99446 * 180.02562 * 4 3 2 7 7 C 1.46498 * 119.99890 * 179.97438 * 6 4 3 8 8 C 1.52996 * 109.47235 * 179.97438 * 7 6 4 9 9 H 1.09008 * 109.70151 * 299.93779 * 8 7 6 10 10 C 1.52764 * 109.51070 * 179.81917 * 8 7 6 11 11 C 1.53048 * 109.38287 * 185.70425 * 10 8 7 12 12 C 1.53042 * 109.53575 * 61.23572 * 11 10 8 13 13 C 1.53188 * 109.31550 * 298.63778 * 12 11 10 14 14 N 1.46919 * 108.77762 * 54.63567 * 13 12 11 15 15 C 1.36931 * 120.63253 * 126.36862 * 14 13 12 16 16 H 1.08001 * 120.00516 * 211.20220 * 15 14 13 17 17 C 1.38815 * 120.00016 * 31.20741 * 15 14 13 18 18 N 1.31621 * 119.99652 * 13.75814 * 17 15 14 19 19 Si 1.86795 * 120.00048 * 193.76273 * 17 15 14 20 20 H 1.48500 * 109.47279 * 179.97438 * 19 17 15 21 21 H 1.48496 * 109.47251 * 299.99691 * 19 17 15 22 22 H 1.48500 * 109.47290 * 59.99896 * 19 17 15 23 23 N 1.34398 * 108.45653 * 180.23894 * 3 2 1 24 24 N 1.28760 * 109.52484 * 359.59243 * 23 3 2 25 25 N 1.34816 * 126.58016 * 180.02562 * 2 1 3 26 26 C 1.46497 * 126.59280 * 0.02562 * 25 2 1 27 27 C 1.52994 * 109.47380 * 119.99837 * 26 25 2 28 28 C 1.53004 * 109.47105 * 240.00116 * 26 25 2 29 29 H 1.08996 * 109.47622 * 90.02327 * 1 2 3 30 30 H 1.09005 * 109.47141 * 210.02702 * 1 2 3 31 31 H 1.08999 * 109.47170 * 330.02347 * 1 2 3 32 32 H 0.97001 * 120.00331 * 359.97438 * 6 4 3 33 33 H 1.08998 * 109.47588 * 59.99533 * 7 6 4 34 34 H 1.08997 * 109.46833 * 299.99815 * 7 6 4 35 35 H 1.09000 * 109.56566 * 65.66823 * 10 8 7 36 36 H 1.09000 * 109.36041 * 305.61063 * 10 8 7 37 37 H 1.09000 * 109.45754 * 301.22024 * 11 10 8 38 38 H 1.08995 * 109.44609 * 181.24853 * 11 10 8 39 39 H 1.09001 * 109.49786 * 178.68175 * 12 11 10 40 40 H 1.09007 * 109.49389 * 58.59013 * 12 11 10 41 41 H 1.09005 * 109.58417 * 294.84161 * 13 12 11 42 42 H 1.08997 * 109.70278 * 174.49611 * 13 12 11 43 43 H 0.97002 * 119.99272 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.47334 * 359.97438 * 26 25 2 45 45 H 1.09007 * 109.46976 * 60.00058 * 27 26 25 46 46 H 1.09000 * 109.47639 * 179.97438 * 27 26 25 47 47 H 1.08997 * 109.47370 * 300.00635 * 27 26 25 48 48 H 1.08997 * 109.47377 * 60.00046 * 28 26 25 49 49 H 1.08996 * 109.46980 * 180.02562 * 28 26 25 50 50 H 1.09001 * 109.46599 * 299.99928 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8737 2.5027 -0.0005 5 8 0.6859 2.7628 -0.0015 6 7 2.7817 3.4987 -0.0010 7 6 2.3376 4.8948 -0.0021 8 6 3.5575 5.8181 -0.0018 9 1 4.1590 5.6320 0.8881 10 6 3.0953 7.2741 -0.0075 11 6 4.3113 8.1924 -0.1506 12 6 5.0180 7.9029 -1.4769 13 6 5.5052 6.4505 -1.4849 14 7 4.3651 5.5677 -1.2034 15 6 4.0576 4.5345 -2.0478 16 1 3.0312 4.2194 -2.1642 17 6 5.0652 3.8919 -2.7540 18 7 6.3248 4.0802 -2.4217 19 14 4.6335 2.7603 -4.1761 20 1 5.8794 2.2023 -4.7605 21 1 3.7772 1.6514 -3.6839 22 1 3.9007 3.5280 -5.2148 23 7 3.5984 0.6789 -0.0053 24 7 3.6299 -0.6083 0.0000 25 7 2.3104 -1.0826 -0.0005 26 6 1.8864 -2.4849 -0.0016 27 6 2.4294 -3.1809 -1.2511 28 6 2.4286 -3.1827 1.2473 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3634 -0.8898 0.5143 31 1 -0.3633 0.8902 0.5135 32 1 3.7293 3.2913 -0.0006 33 1 1.7375 5.0859 0.8875 34 1 1.7381 5.0845 -0.8924 35 1 2.5791 7.4969 0.9263 36 1 2.4175 7.4348 -0.8458 37 1 5.0005 8.0136 0.6746 38 1 3.9849 9.2322 -0.1325 39 1 5.8702 8.5732 -1.5890 40 1 4.3219 8.0576 -2.3014 41 1 6.2688 6.3171 -0.7185 42 1 5.9224 6.2083 -2.4622 43 1 7.0288 3.6309 -2.9151 44 1 0.7975 -2.5352 -0.0016 45 1 3.5184 -3.1307 -1.2507 46 1 2.1143 -4.2244 -1.2518 47 1 2.0432 -2.6838 -2.1409 48 1 2.0417 -2.6869 2.1375 49 1 2.1135 -4.2261 1.2462 50 1 3.5175 -3.1324 1.2477 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024732501.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:32 Heat of formation + Delta-G solvation = 68.963560 kcal Electronic energy + Delta-G solvation = -30595.414738 eV Core-core repulsion = 26660.077334 eV Total energy + Delta-G solvation = -3935.337404 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.00869 -38.94347 -37.57979 -36.41021 -34.17195 -32.99210 -32.80121 -31.16351 -30.33271 -29.81582 -27.76553 -27.65879 -25.88759 -24.70776 -23.85376 -22.46865 -22.02973 -20.58274 -20.22048 -19.55057 -18.98742 -17.48099 -16.60332 -16.04328 -15.86574 -15.43848 -15.24598 -14.68718 -14.21014 -14.02571 -13.95011 -13.75095 -13.43666 -13.33033 -13.23680 -13.13943 -12.99243 -12.74167 -12.57700 -12.44574 -12.33364 -11.96699 -11.83735 -11.78875 -11.64421 -11.40111 -11.14310 -10.86067 -10.76732 -10.68495 -10.46430 -10.22536 -10.06992 -10.00279 -9.91684 -9.56801 -9.40583 -9.24425 -8.85783 -8.46194 -8.09565 -6.54838 -5.73437 -3.18621 1.36683 2.14250 2.17709 3.43155 3.47778 3.49972 3.79145 3.92452 4.17983 4.37780 4.49146 4.54241 4.59701 4.78417 5.07189 5.11565 5.17291 5.29252 5.31765 5.37078 5.43143 5.44030 5.52016 5.58688 5.67909 5.70818 5.75950 5.80417 5.89327 5.95110 6.03404 6.11130 6.20209 6.23325 6.40742 6.42142 6.47702 6.62485 6.65259 6.77857 6.79584 6.92457 7.05381 7.24715 7.45700 7.73398 7.89733 8.18460 8.46865 8.51638 8.90683 9.27447 9.88736 10.46379 11.34360 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014237 B = 0.003864 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.170322 B = 7243.769933 C = 8379.573394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.110 3.890 3 C -0.093 4.093 4 C 0.596 3.404 5 O -0.565 6.565 6 N -0.675 5.675 7 C 0.135 3.865 8 C 0.160 3.840 9 H 0.032 0.968 10 C -0.127 4.127 11 C -0.107 4.107 12 C -0.144 4.144 13 C 0.174 3.826 14 N -0.587 5.587 15 C -0.253 4.253 16 H 0.068 0.932 17 C 0.016 3.984 18 N -0.896 5.896 19 Si 0.893 3.107 20 H -0.291 1.291 21 H -0.284 1.284 22 H -0.286 1.286 23 N -0.187 5.187 24 N -0.071 5.071 25 N -0.364 5.364 26 C 0.146 3.854 27 C -0.163 4.163 28 C -0.162 4.162 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.423 0.577 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.043 0.957 39 H 0.045 0.955 40 H 0.053 0.947 41 H 0.018 0.982 42 H 0.084 0.916 43 H 0.254 0.746 44 H 0.106 0.894 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.064 0.936 48 H 0.063 0.937 49 H 0.079 0.921 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.858 -9.517 6.752 15.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.027 4.027 3 C -0.233 4.233 4 C 0.379 3.621 5 O -0.445 6.445 6 N -0.325 5.325 7 C 0.011 3.989 8 C 0.053 3.947 9 H 0.049 0.951 10 C -0.167 4.167 11 C -0.145 4.145 12 C -0.183 4.183 13 C 0.048 3.952 14 N -0.311 5.311 15 C -0.382 4.382 16 H 0.085 0.915 17 C -0.183 4.183 18 N -0.540 5.540 19 Si 0.723 3.277 20 H -0.217 1.217 21 H -0.210 1.210 22 H -0.212 1.212 23 N -0.060 5.060 24 N -0.050 5.050 25 N -0.151 5.151 26 C 0.044 3.956 27 C -0.221 4.221 28 C -0.220 4.220 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.130 0.870 32 H 0.263 0.737 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.036 0.964 42 H 0.102 0.898 43 H 0.064 0.936 44 H 0.124 0.876 45 H 0.094 0.906 46 H 0.098 0.902 47 H 0.083 0.917 48 H 0.082 0.918 49 H 0.098 0.902 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.999 -9.828 6.673 14.903 hybrid contribution -0.580 -0.637 -0.967 1.295 sum -9.579 -10.465 5.706 15.292 Atomic orbital electron populations 1.20653 0.85151 1.04850 1.04338 1.21843 0.96000 0.86548 0.98309 1.21348 0.88889 0.95692 1.17340 1.16706 0.85577 0.82628 0.77146 1.90674 1.16155 1.83834 1.53848 1.45857 1.11211 1.05145 1.70241 1.21337 0.96726 0.80058 1.00786 1.20641 0.91191 0.91634 0.91253 0.95089 1.21869 0.97670 0.96652 1.00479 1.21360 0.97214 0.97452 0.98454 1.22199 0.99061 1.00604 0.96469 1.20750 0.88441 0.84641 1.01354 1.44034 1.32485 1.32245 1.22374 1.19067 0.92137 1.08638 1.18376 0.91456 1.24991 0.95455 0.97757 1.00143 1.69980 0.98488 1.45110 1.40385 0.86514 0.77087 0.81038 0.83052 1.21696 1.21043 1.21239 1.74753 1.18947 1.03599 1.08656 1.81939 0.95987 1.03699 1.23400 1.50605 1.06586 1.06875 1.51049 1.21540 1.00195 0.75791 0.98071 1.22155 1.03383 1.00564 0.96006 1.22148 1.03337 1.00568 0.95900 0.89433 0.91296 0.86959 0.73723 0.92482 0.91390 0.93026 0.92099 0.92881 0.93781 0.93604 0.92865 0.96397 0.89752 0.93614 0.87594 0.90636 0.90162 0.91733 0.91804 0.90197 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.04 9.41 36.01 0.34 -0.70 16 2 C 0.11 1.71 7.02 -81.87 -0.57 1.13 16 3 C -0.09 -1.80 6.99 -83.55 -0.58 -2.39 16 4 C 0.60 12.20 7.82 -12.47 -0.10 12.11 16 5 O -0.56 -11.71 14.72 5.29 0.08 -11.63 16 6 N -0.67 -14.19 3.84 -61.36 -0.24 -14.43 16 7 C 0.13 2.64 4.42 -4.04 -0.02 2.62 16 8 C 0.16 3.21 2.99 -67.82 -0.20 3.00 16 9 H 0.03 0.65 8.14 -51.92 -0.42 0.23 16 10 C -0.13 -2.18 5.35 -26.83 -0.14 -2.32 16 11 C -0.11 -1.80 5.89 -26.68 -0.16 -1.96 16 12 C -0.14 -2.74 6.08 -26.61 -0.16 -2.91 16 13 C 0.17 4.05 5.27 -3.72 -0.02 4.03 16 14 N -0.59 -13.97 2.98 -165.03 -0.49 -14.46 16 15 C -0.25 -6.61 6.98 -15.06 -0.11 -6.72 16 16 H 0.07 1.81 5.85 -52.49 -0.31 1.50 16 17 C 0.02 0.45 4.97 -17.43 -0.09 0.36 16 18 N -0.90 -25.57 11.22 55.49 0.62 -24.95 16 19 Si 0.89 22.64 29.58 -169.99 -5.03 17.61 16 20 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 21 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 N -0.19 -3.89 12.04 32.85 0.40 -3.49 16 24 N -0.07 -1.30 13.67 60.35 0.82 -0.47 16 25 N -0.36 -5.20 3.28 -50.41 -0.17 -5.36 16 26 C 0.15 1.34 3.68 -67.93 -0.25 1.09 16 27 C -0.16 -1.42 9.47 37.15 0.35 -1.06 16 28 C -0.16 -1.26 9.47 37.16 0.35 -0.90 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.54 7.19 -51.93 -0.37 0.16 16 31 H 0.11 1.45 6.43 -51.93 -0.33 1.11 16 32 H 0.42 9.76 7.08 -40.82 -0.29 9.47 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.42 7.42 -51.93 -0.39 1.04 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 2.21 6.19 -51.93 -0.32 1.89 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.11 0.70 6.79 -51.93 -0.35 0.34 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 393.96 15.07 5.94 5.94 Total: -1.00 -31.69 393.96 -7.68 -39.37 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -8.26 Total: 6.49 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -1.36 Total: 5.39 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: 0.95 Total: -63.16 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.08 Total: -11.63 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.03 Total: 17.61 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.69 -7.68 -39.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024732501.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.335 kcal (2) G-P(sol) polarization free energy of solvation -31.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds