Wall clock time and date at job start Tue Mar 31 2020 18:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36600 * 126.58006 * 2 1 4 4 C 1.47520 * 125.76679 * 359.97438 * 3 2 1 5 5 O 1.21591 * 120.00450 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99446 * 180.02562 * 4 3 2 7 7 C 1.46498 * 119.99890 * 179.97438 * 6 4 3 8 8 C 1.52996 * 109.47235 * 179.97438 * 7 6 4 9 9 H 1.09008 * 109.70151 * 299.93779 * 8 7 6 10 10 C 1.52764 * 109.51070 * 179.81917 * 8 7 6 11 11 C 1.53048 * 109.38287 * 185.70425 * 10 8 7 12 12 C 1.53042 * 109.53575 * 61.23572 * 11 10 8 13 13 C 1.53188 * 109.31550 * 298.63778 * 12 11 10 14 14 N 1.46919 * 108.77762 * 54.63567 * 13 12 11 15 15 C 1.36931 * 120.63253 * 126.36862 * 14 13 12 16 16 H 1.08001 * 120.00516 * 211.20220 * 15 14 13 17 17 C 1.38815 * 120.00016 * 31.20741 * 15 14 13 18 18 N 1.31621 * 119.99652 * 13.75814 * 17 15 14 19 19 Si 1.86795 * 120.00048 * 193.76273 * 17 15 14 20 20 H 1.48500 * 109.47279 * 179.97438 * 19 17 15 21 21 H 1.48496 * 109.47251 * 299.99691 * 19 17 15 22 22 H 1.48500 * 109.47290 * 59.99896 * 19 17 15 23 23 N 1.34398 * 108.45653 * 180.23894 * 3 2 1 24 24 N 1.28760 * 109.52484 * 359.59243 * 23 3 2 25 25 N 1.34816 * 126.58016 * 180.02562 * 2 1 3 26 26 C 1.46497 * 126.59280 * 0.02562 * 25 2 1 27 27 C 1.52994 * 109.47380 * 119.99837 * 26 25 2 28 28 C 1.53004 * 109.47105 * 240.00116 * 26 25 2 29 29 H 1.08996 * 109.47622 * 90.02327 * 1 2 3 30 30 H 1.09005 * 109.47141 * 210.02702 * 1 2 3 31 31 H 1.08999 * 109.47170 * 330.02347 * 1 2 3 32 32 H 0.97001 * 120.00331 * 359.97438 * 6 4 3 33 33 H 1.08998 * 109.47588 * 59.99533 * 7 6 4 34 34 H 1.08997 * 109.46833 * 299.99815 * 7 6 4 35 35 H 1.09000 * 109.56566 * 65.66823 * 10 8 7 36 36 H 1.09000 * 109.36041 * 305.61063 * 10 8 7 37 37 H 1.09000 * 109.45754 * 301.22024 * 11 10 8 38 38 H 1.08995 * 109.44609 * 181.24853 * 11 10 8 39 39 H 1.09001 * 109.49786 * 178.68175 * 12 11 10 40 40 H 1.09007 * 109.49389 * 58.59013 * 12 11 10 41 41 H 1.09005 * 109.58417 * 294.84161 * 13 12 11 42 42 H 1.08997 * 109.70278 * 174.49611 * 13 12 11 43 43 H 0.97002 * 119.99272 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.47334 * 359.97438 * 26 25 2 45 45 H 1.09007 * 109.46976 * 60.00058 * 27 26 25 46 46 H 1.09000 * 109.47639 * 179.97438 * 27 26 25 47 47 H 1.08997 * 109.47370 * 300.00635 * 27 26 25 48 48 H 1.08997 * 109.47377 * 60.00046 * 28 26 25 49 49 H 1.08996 * 109.46980 * 180.02562 * 28 26 25 50 50 H 1.09001 * 109.46599 * 299.99928 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8737 2.5027 -0.0005 5 8 0.6859 2.7628 -0.0015 6 7 2.7817 3.4987 -0.0010 7 6 2.3376 4.8948 -0.0021 8 6 3.5575 5.8181 -0.0018 9 1 4.1590 5.6320 0.8881 10 6 3.0953 7.2741 -0.0075 11 6 4.3113 8.1924 -0.1506 12 6 5.0180 7.9029 -1.4769 13 6 5.5052 6.4505 -1.4849 14 7 4.3651 5.5677 -1.2034 15 6 4.0576 4.5345 -2.0478 16 1 3.0312 4.2194 -2.1642 17 6 5.0652 3.8919 -2.7540 18 7 6.3248 4.0802 -2.4217 19 14 4.6335 2.7603 -4.1761 20 1 5.8794 2.2023 -4.7605 21 1 3.7772 1.6514 -3.6839 22 1 3.9007 3.5280 -5.2148 23 7 3.5984 0.6789 -0.0053 24 7 3.6299 -0.6083 0.0000 25 7 2.3104 -1.0826 -0.0005 26 6 1.8864 -2.4849 -0.0016 27 6 2.4294 -3.1809 -1.2511 28 6 2.4286 -3.1827 1.2473 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3634 -0.8898 0.5143 31 1 -0.3633 0.8902 0.5135 32 1 3.7293 3.2913 -0.0006 33 1 1.7375 5.0859 0.8875 34 1 1.7381 5.0845 -0.8924 35 1 2.5791 7.4969 0.9263 36 1 2.4175 7.4348 -0.8458 37 1 5.0005 8.0136 0.6746 38 1 3.9849 9.2322 -0.1325 39 1 5.8702 8.5732 -1.5890 40 1 4.3219 8.0576 -2.3014 41 1 6.2688 6.3171 -0.7185 42 1 5.9224 6.2083 -2.4622 43 1 7.0288 3.6309 -2.9151 44 1 0.7975 -2.5352 -0.0016 45 1 3.5184 -3.1307 -1.2507 46 1 2.1143 -4.2244 -1.2518 47 1 2.0432 -2.6838 -2.1409 48 1 2.0417 -2.6869 2.1375 49 1 2.1135 -4.2261 1.2462 50 1 3.5175 -3.1324 1.2477 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024732501.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:31 Heat of formation + Delta-G solvation = 48.291821 kcal Electronic energy + Delta-G solvation = -30596.311132 eV Core-core repulsion = 26660.077334 eV Total energy + Delta-G solvation = -3936.233798 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -43.29094 -40.54173 -39.21805 -37.36282 -35.73216 -34.88707 -33.95794 -32.61538 -31.80449 -31.54117 -28.94767 -28.30753 -27.59128 -26.45169 -24.98747 -23.95790 -23.63334 -22.17341 -21.43898 -20.95232 -20.56526 -18.89075 -18.13003 -17.48710 -17.23602 -17.07036 -16.80999 -16.06893 -15.71878 -15.47890 -15.26799 -15.22269 -14.89584 -14.76726 -14.52826 -14.26380 -14.05482 -13.99352 -13.96502 -13.60930 -13.39635 -13.23977 -13.21417 -12.93904 -12.85413 -12.83674 -12.57058 -12.54938 -12.36484 -12.32733 -12.07593 -11.90041 -11.77323 -11.50578 -11.19864 -11.12216 -11.07554 -10.87441 -10.50989 -10.22190 -9.74328 -8.53266 -7.83280 -5.27599 0.15043 0.69818 1.10655 1.35075 1.37836 1.41399 2.26950 2.42614 2.48545 3.24116 3.32585 3.35470 3.59020 3.62583 3.78635 3.79748 3.95974 4.01874 4.13039 4.24949 4.29824 4.45627 4.51949 4.58372 4.59408 4.61079 4.64723 4.68900 4.71389 4.73449 4.78565 4.85807 4.89961 5.02687 5.12807 5.14605 5.16580 5.21252 5.24752 5.31094 5.40758 5.49282 5.58993 5.64730 5.65977 5.76357 5.86674 6.45249 6.62235 6.99474 7.21635 7.27888 7.90872 8.43085 9.22011 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014237 B = 0.003864 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.170322 B = 7243.769933 C = 8379.573394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.126 3.874 3 C -0.132 4.132 4 C 0.594 3.406 5 O -0.571 6.571 6 N -0.686 5.686 7 C 0.139 3.861 8 C 0.157 3.843 9 H 0.027 0.973 10 C -0.120 4.120 11 C -0.103 4.103 12 C -0.134 4.134 13 C 0.178 3.822 14 N -0.601 5.601 15 C -0.229 4.229 16 H 0.060 0.940 17 C -0.029 4.029 18 N -0.923 5.923 19 Si 0.935 3.065 20 H -0.296 1.296 21 H -0.296 1.296 22 H -0.280 1.280 23 N -0.230 5.230 24 N -0.095 5.095 25 N -0.347 5.347 26 C 0.131 3.869 27 C -0.161 4.161 28 C -0.157 4.157 29 H 0.099 0.901 30 H 0.115 0.885 31 H 0.098 0.902 32 H 0.412 0.588 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.085 0.915 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.047 0.953 41 H -0.003 1.003 42 H 0.049 0.951 43 H 0.246 0.754 44 H 0.147 0.853 45 H 0.050 0.950 46 H 0.119 0.881 47 H 0.052 0.948 48 H 0.061 0.939 49 H 0.117 0.883 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.750 -10.116 7.776 18.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.013 4.013 3 C -0.272 4.272 4 C 0.379 3.621 5 O -0.452 6.452 6 N -0.334 5.334 7 C 0.015 3.985 8 C 0.051 3.949 9 H 0.044 0.956 10 C -0.159 4.159 11 C -0.140 4.140 12 C -0.173 4.173 13 C 0.052 3.948 14 N -0.326 5.326 15 C -0.360 4.360 16 H 0.078 0.922 17 C -0.226 4.226 18 N -0.569 5.569 19 Si 0.767 3.233 20 H -0.222 1.222 21 H -0.223 1.223 22 H -0.206 1.206 23 N -0.102 5.102 24 N -0.074 5.074 25 N -0.135 5.135 26 C 0.032 3.968 27 C -0.219 4.219 28 C -0.215 4.215 29 H 0.118 0.882 30 H 0.133 0.867 31 H 0.117 0.883 32 H 0.248 0.752 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.015 0.985 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.164 0.836 45 H 0.069 0.931 46 H 0.137 0.863 47 H 0.071 0.929 48 H 0.080 0.920 49 H 0.135 0.865 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.913 -10.432 7.705 17.610 hybrid contribution 0.226 -0.567 -1.224 1.368 sum -11.687 -10.998 6.480 17.307 Atomic orbital electron populations 1.20822 0.81870 1.06463 1.05488 1.22413 0.97612 0.85615 0.95709 1.21473 0.89465 0.96158 1.20133 1.16907 0.85423 0.83179 0.76565 1.90647 1.16080 1.84206 1.54280 1.45944 1.10619 1.05961 1.70833 1.21372 0.96475 0.79463 1.01143 1.20834 0.90701 0.94061 0.89259 0.95568 1.21811 0.97982 0.93987 1.02143 1.21352 0.96749 0.99203 0.96730 1.22040 0.99833 0.97425 0.98009 1.20579 0.88073 0.87509 0.98631 1.44249 1.32874 1.31891 1.23570 1.19084 0.91428 1.08030 1.17466 0.92200 1.25416 0.95621 0.99407 1.02152 1.70092 0.98862 1.46569 1.41418 0.85835 0.76263 0.79616 0.81627 1.22195 1.22333 1.20646 1.74714 1.20384 1.04853 1.10270 1.81805 0.98413 1.02957 1.24252 1.51024 1.05120 1.08589 1.48733 1.22228 1.02586 0.73040 0.98991 1.22178 1.01790 1.02729 0.95169 1.22155 1.01846 1.02551 0.94913 0.88218 0.86682 0.88320 0.75169 0.90022 0.92875 0.89644 0.92420 0.92657 0.90450 0.91757 0.93380 0.98477 0.93283 0.94493 0.83576 0.93051 0.86263 0.92921 0.91981 0.86502 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.75 9.41 71.24 0.67 -1.08 16 2 C 0.13 3.75 7.02 41.72 0.29 4.04 16 3 C -0.13 -5.21 6.99 40.82 0.29 -4.93 16 4 C 0.59 24.77 7.82 86.69 0.68 25.44 16 5 O -0.57 -23.54 14.72 -4.00 -0.06 -23.60 16 6 N -0.69 -29.56 3.84 -466.29 -1.79 -31.35 16 7 C 0.14 5.40 4.42 86.38 0.38 5.78 16 8 C 0.16 6.24 2.99 44.83 0.13 6.37 16 9 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 10 C -0.12 -3.80 5.35 30.53 0.16 -3.64 16 11 C -0.10 -3.15 5.89 30.62 0.18 -2.97 16 12 C -0.13 -4.94 6.08 30.67 0.19 -4.75 16 13 C 0.18 8.47 5.27 86.36 0.46 8.92 16 14 N -0.60 -29.12 2.98 -676.04 -2.01 -31.13 16 15 C -0.23 -12.35 6.98 84.04 0.59 -11.77 16 16 H 0.06 3.31 5.85 -2.91 -0.02 3.29 16 17 C -0.03 -1.68 4.97 84.86 0.42 -1.26 16 18 N -0.92 -55.16 11.22 21.65 0.24 -54.92 16 19 Si 0.94 48.28 29.58 68.60 2.03 50.31 16 20 H -0.30 -15.34 7.11 99.48 0.71 -14.63 16 21 H -0.30 -15.72 7.11 99.48 0.71 -15.01 16 22 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 23 N -0.23 -10.00 12.04 -50.00 -0.60 -10.61 16 24 N -0.10 -3.58 13.67 37.02 0.51 -3.08 16 25 N -0.35 -9.56 3.28 -313.39 -1.03 -10.59 16 26 C 0.13 2.03 3.68 44.99 0.17 2.19 16 27 C -0.16 -2.44 9.47 71.98 0.68 -1.76 16 28 C -0.16 -2.02 9.47 71.98 0.68 -1.34 16 29 H 0.10 1.81 8.14 -2.39 -0.02 1.80 16 30 H 0.11 1.21 7.19 -2.38 -0.02 1.19 16 31 H 0.10 2.33 6.43 -2.39 -0.02 2.32 16 32 H 0.41 19.87 7.08 -92.71 -0.66 19.22 16 33 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.05 2.22 7.42 -2.39 -0.02 2.20 16 35 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 41 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 42 H 0.05 2.67 6.19 -2.39 -0.01 2.66 16 43 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 44 H 0.15 1.16 6.79 -2.39 -0.02 1.14 16 45 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 46 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -74.23 393.96 3.53 -70.70 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.28 Total: 25.01 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: 5.96 Total: 19.26 kcal Atomic # 7 Polarization: -136.99 SS G_CDS: -4.69 Total: -141.68 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.06 Total: -23.60 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 2.03 Total: 50.31 kcal Total: -74.23 3.53 -70.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024732501.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.989 kcal (2) G-P(sol) polarization free energy of solvation -74.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds