Wall clock time and date at job start Tue Mar 31 2020 18:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36602 * 126.58155 * 2 1 4 4 C 1.47519 * 125.76671 * 0.03748 * 3 2 1 5 5 O 1.21599 * 120.00116 * 359.71571 * 4 3 2 6 6 N 1.34777 * 119.99981 * 179.71673 * 4 3 2 7 7 C 1.46500 * 120.00270 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47473 * 154.99797 * 7 6 4 9 9 C 1.53000 * 109.47060 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.47233 * 299.99657 * 9 8 7 11 11 N 1.46506 * 109.47042 * 300.00642 * 10 9 8 12 12 C 1.36940 * 119.99462 * 204.99934 * 11 10 9 13 13 H 1.07992 * 120.00256 * 359.97438 * 12 11 10 14 14 C 1.38815 * 119.99328 * 179.97438 * 12 11 10 15 15 N 1.31619 * 119.99663 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 120.00396 * 359.97438 * 14 12 11 17 17 H 1.48505 * 109.47274 * 89.99732 * 16 14 12 18 18 H 1.48500 * 109.47246 * 209.99718 * 16 14 12 19 19 H 1.48500 * 109.47214 * 330.00048 * 16 14 12 20 20 C 1.52997 * 109.46817 * 60.00194 * 10 9 8 21 21 C 1.52999 * 109.46944 * 275.00142 * 7 6 4 22 22 N 1.34391 * 108.45823 * 179.77423 * 3 2 1 23 23 N 1.28764 * 109.52858 * 0.22742 * 22 3 2 24 24 N 1.34812 * 126.58313 * 180.16793 * 2 1 3 25 25 C 1.46501 * 126.59315 * 359.96277 * 24 2 1 26 26 C 1.53011 * 109.47007 * 120.27633 * 25 24 2 27 27 C 1.52992 * 109.47434 * 240.27448 * 25 24 2 28 28 H 1.09005 * 109.46978 * 90.02714 * 1 2 3 29 29 H 1.09006 * 109.47081 * 210.02438 * 1 2 3 30 30 H 1.08996 * 109.47523 * 330.02463 * 1 2 3 31 31 H 0.97000 * 120.00239 * 359.97438 * 6 4 3 32 32 H 1.09002 * 109.47129 * 34.99540 * 7 6 4 33 33 H 1.09002 * 109.47153 * 59.99757 * 8 7 6 34 34 H 1.09001 * 109.46832 * 299.99948 * 8 7 6 35 35 H 1.08992 * 109.47399 * 59.99823 * 9 8 7 36 36 H 1.09004 * 109.46724 * 180.02562 * 9 8 7 37 37 H 1.08993 * 109.47662 * 180.02562 * 10 9 8 38 38 H 0.97000 * 120.00279 * 24.99489 * 11 10 9 39 39 H 0.97000 * 120.00212 * 180.02562 * 15 14 12 40 40 H 1.09002 * 109.47153 * 60.00231 * 20 10 9 41 41 H 1.09001 * 109.47289 * 180.02562 * 20 10 9 42 42 H 1.09000 * 109.47486 * 59.99569 * 21 7 6 43 43 H 1.09002 * 109.46716 * 299.99651 * 21 7 6 44 44 H 1.09002 * 109.47449 * 0.28426 * 25 24 2 45 45 H 1.08997 * 109.46633 * 59.99729 * 26 25 24 46 46 H 1.08997 * 109.46995 * 180.02562 * 26 25 24 47 47 H 1.08998 * 109.46700 * 300.00472 * 26 25 24 48 48 H 1.09005 * 109.46964 * 60.00436 * 27 25 24 49 49 H 1.09009 * 109.47536 * 179.97438 * 27 25 24 50 50 H 1.08999 * 109.47729 * 300.00371 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8737 2.5027 0.0008 5 8 0.6859 2.7627 -0.0037 6 7 2.7816 3.4987 0.0065 7 6 2.3375 4.8948 0.0078 8 6 3.4262 5.7758 0.6236 9 6 2.9620 7.2337 0.6255 10 6 2.6927 7.6852 -0.8114 11 7 3.9219 7.5650 -1.5994 12 6 4.1022 8.3456 -2.7100 13 1 3.3381 9.0494 -3.0052 14 6 5.2671 8.2321 -3.4564 15 7 5.4402 8.9820 -4.5241 16 14 6.5889 7.0152 -2.9455 17 1 6.3368 5.7064 -3.6003 18 1 7.9200 7.5274 -3.3593 19 1 6.5610 6.8442 -1.4706 20 6 1.6040 6.8041 -1.4271 21 6 2.0686 5.3457 -1.4293 22 7 3.5983 0.6789 0.0050 23 7 3.6299 -0.6084 0.0033 24 7 2.3104 -1.0825 -0.0032 25 6 1.8864 -2.4848 -0.0065 26 6 2.4343 -3.1803 -1.2544 27 6 2.4240 -3.1832 1.2440 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3634 0.8901 0.5134 31 1 3.7292 3.2913 0.0104 32 1 1.4228 4.9845 0.5939 33 1 4.3409 5.6861 0.0375 34 1 3.6177 5.4545 1.6474 35 1 2.0475 7.3231 1.2118 36 1 3.7379 7.8615 1.0638 37 1 2.3625 8.7239 -0.8101 38 1 4.6081 6.9326 -1.3345 39 1 6.2540 8.9024 -5.0459 40 1 0.6895 6.8935 -0.8408 41 1 1.4125 7.1254 -2.4510 42 1 1.2929 4.7181 -1.8680 43 1 2.9832 5.2560 -2.0153 44 1 0.7976 -2.5352 -0.0112 45 1 3.5231 -3.1299 -1.2498 46 1 2.1185 -4.2236 -1.2571 47 1 2.0513 -2.6827 -2.1453 48 1 2.0336 -2.6878 2.1330 49 1 2.1081 -4.2266 1.2418 50 1 3.5128 -3.1329 1.2487 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026584987.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:34 Heat of formation + Delta-G solvation = 52.687193 kcal Electronic energy + Delta-G solvation = -29559.014813 eV Core-core repulsion = 25622.971612 eV Total energy + Delta-G solvation = -3936.043200 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.51278 -39.74715 -38.05075 -36.79914 -34.78102 -33.30590 -32.78940 -31.37614 -30.53478 -30.32292 -28.53656 -27.95258 -27.52600 -24.30215 -23.75443 -22.98847 -22.26301 -21.34794 -20.70086 -20.07351 -18.65055 -17.79559 -17.67708 -16.75017 -16.44156 -16.01876 -15.14238 -14.87440 -14.72006 -14.47106 -14.40009 -14.12447 -13.84595 -13.72982 -13.52813 -13.46931 -13.37831 -12.87796 -12.79904 -12.60565 -12.38595 -12.24105 -12.20644 -12.12313 -11.95538 -11.80596 -11.71435 -11.29771 -11.02326 -10.85366 -10.73277 -10.50451 -10.45527 -10.15713 -10.06098 -9.88569 -9.70107 -9.47931 -9.34682 -8.86906 -8.75545 -7.18742 -5.71290 -3.05339 0.90512 1.59808 1.69688 3.18178 3.28258 3.40947 3.43770 3.49590 3.80679 3.93239 4.17530 4.28570 4.30832 4.54305 4.64099 4.73625 4.90439 4.95439 5.01366 5.07036 5.09148 5.16068 5.16718 5.32935 5.35968 5.44081 5.49420 5.50879 5.58598 5.61229 5.69765 5.73090 5.79934 5.90775 5.99372 6.04073 6.11340 6.18423 6.27411 6.43883 6.53793 6.58834 6.74412 6.85964 6.95102 7.05703 7.51641 7.82505 8.06891 8.23233 8.48434 9.27858 10.00577 10.20980 11.47463 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015945 B = 0.002721 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.577168 B =10287.602072 C =11211.087690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.122 3.878 3 C -0.105 4.105 4 C 0.605 3.395 5 O -0.540 6.540 6 N -0.708 5.708 7 C 0.148 3.852 8 C -0.125 4.125 9 C -0.120 4.120 10 C 0.177 3.823 11 N -0.745 5.745 12 C -0.237 4.237 13 H 0.090 0.910 14 C 0.002 3.998 15 N -0.936 5.936 16 Si 0.880 3.120 17 H -0.284 1.284 18 H -0.292 1.292 19 H -0.277 1.277 20 C -0.130 4.130 21 C -0.119 4.119 22 N -0.204 5.204 23 N -0.065 5.065 24 N -0.358 5.358 25 C 0.144 3.856 26 C -0.163 4.163 27 C -0.163 4.163 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.406 0.594 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.360 0.640 39 H 0.258 0.742 40 H 0.049 0.951 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.072 0.928 44 H 0.109 0.891 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.082 0.918 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.980 -25.629 13.557 31.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.016 4.016 3 C -0.245 4.245 4 C 0.390 3.610 5 O -0.417 6.417 6 N -0.357 5.357 7 C 0.045 3.955 8 C -0.163 4.163 9 C -0.159 4.159 10 C 0.067 3.933 11 N -0.389 5.389 12 C -0.367 4.367 13 H 0.108 0.892 14 C -0.193 4.193 15 N -0.585 5.585 16 Si 0.710 3.290 17 H -0.211 1.211 18 H -0.219 1.219 19 H -0.203 1.203 20 C -0.170 4.170 21 C -0.158 4.158 22 N -0.077 5.077 23 N -0.044 5.044 24 N -0.145 5.145 25 C 0.042 3.958 26 C -0.221 4.221 27 C -0.221 4.221 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.132 0.868 31 H 0.241 0.759 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.194 0.806 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.127 0.873 45 H 0.094 0.906 46 H 0.101 0.899 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.101 0.899 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.351 -25.679 13.379 30.750 hybrid contribution 0.644 -0.964 0.077 1.162 sum -9.707 -26.644 13.456 31.388 Atomic orbital electron populations 1.20725 0.84775 1.05250 1.04707 1.21926 0.96231 0.86376 0.97072 1.21283 0.89043 0.95534 1.18597 1.16694 0.85663 0.82420 0.76260 1.90750 1.15847 1.83596 1.51494 1.45956 1.10073 1.06155 1.73530 1.21135 0.98084 0.78247 0.98032 1.21764 0.98469 0.95760 1.00321 1.21769 1.01163 0.94589 0.98394 1.20229 0.87308 0.97113 0.88617 1.42838 1.17632 1.47415 1.31005 1.19096 1.02693 1.14739 1.00193 0.89224 1.24650 0.97906 0.99322 0.97415 1.69697 1.27639 1.42620 1.18496 0.86619 0.82547 0.81798 0.77995 1.21121 1.21852 1.20342 1.22085 0.98253 0.94731 1.01963 1.21777 1.02076 0.96861 0.95099 1.74627 1.19075 1.04212 1.09760 1.81928 0.96285 1.03244 1.22989 1.50640 1.06332 1.07215 1.50329 1.21648 1.00467 0.75298 0.98353 1.22162 1.03268 1.00871 0.95797 1.22165 1.03315 1.00871 0.95742 0.89008 0.90881 0.86843 0.75923 0.89524 0.91269 0.91948 0.91755 0.91360 0.92459 0.80634 0.93189 0.93241 0.91406 0.92648 0.90980 0.87279 0.90635 0.89873 0.91640 0.91736 0.89882 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 9.40 36.00 0.34 -0.38 16 2 C 0.12 1.30 7.02 -81.88 -0.57 0.72 16 3 C -0.11 -1.42 6.99 -83.55 -0.58 -2.00 16 4 C 0.61 8.93 7.78 -12.48 -0.10 8.84 16 5 O -0.54 -8.67 14.38 5.28 0.08 -8.59 16 6 N -0.71 -10.19 5.07 -54.85 -0.28 -10.47 16 7 C 0.15 2.22 2.45 -67.93 -0.17 2.05 16 8 C -0.12 -1.81 5.22 -26.73 -0.14 -1.95 16 9 C -0.12 -1.82 5.61 -26.73 -0.15 -1.97 16 10 C 0.18 3.31 3.10 -67.93 -0.21 3.10 16 11 N -0.75 -17.19 4.08 -53.42 -0.22 -17.41 16 12 C -0.24 -6.63 10.41 -15.06 -0.16 -6.79 16 13 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 14 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 15 N -0.94 -29.67 13.97 55.49 0.78 -28.90 16 16 Si 0.88 22.39 27.73 -169.99 -4.71 17.68 16 17 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 18 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 19 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 20 C -0.13 -2.28 5.61 -26.70 -0.15 -2.43 16 21 C -0.12 -2.06 5.34 -26.70 -0.14 -2.20 16 22 N -0.20 -2.90 12.04 32.84 0.40 -2.51 16 23 N -0.07 -0.83 13.67 60.35 0.82 -0.01 16 24 N -0.36 -3.45 3.28 -50.40 -0.17 -3.62 16 25 C 0.14 0.78 3.68 -67.93 -0.25 0.53 16 26 C -0.16 -0.80 9.47 37.16 0.35 -0.45 16 27 C -0.16 -0.73 9.47 37.15 0.35 -0.38 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.32 7.20 -51.93 -0.37 -0.05 16 30 H 0.11 1.04 6.43 -51.93 -0.33 0.70 16 31 H 0.41 5.57 8.29 -40.82 -0.34 5.23 16 32 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 33 H 0.07 1.11 6.51 -51.93 -0.34 0.78 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 38 H 0.36 8.22 3.93 -40.82 -0.16 8.06 16 39 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.07 1.42 7.61 -51.93 -0.39 1.02 16 44 H 0.11 0.33 6.79 -51.93 -0.35 -0.02 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.08 0.18 8.14 -51.92 -0.42 -0.24 16 50 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 396.63 15.07 5.98 5.98 Total: -1.00 -34.31 396.63 -7.20 -41.50 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -8.19 Total: 9.67 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -1.68 Total: -3.34 kcal Atomic # 7 Polarization: -64.24 SS G_CDS: 1.33 Total: -62.91 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.08 Total: -8.59 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.71 Total: 17.68 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.31 -7.20 -41.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026584987.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.190 kcal (2) G-P(sol) polarization free energy of solvation -34.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds