Wall clock time and date at job start Tue Mar 31 2020 18:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36602 * 126.58155 * 2 1 4 4 C 1.47519 * 125.76671 * 0.03748 * 3 2 1 5 5 O 1.21599 * 120.00116 * 359.71571 * 4 3 2 6 6 N 1.34777 * 119.99981 * 179.71673 * 4 3 2 7 7 C 1.46500 * 120.00270 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47473 * 154.99797 * 7 6 4 9 9 C 1.53000 * 109.47060 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.47233 * 299.99657 * 9 8 7 11 11 N 1.46506 * 109.47042 * 300.00642 * 10 9 8 12 12 C 1.36940 * 119.99462 * 204.99934 * 11 10 9 13 13 H 1.07992 * 120.00256 * 359.97438 * 12 11 10 14 14 C 1.38815 * 119.99328 * 179.97438 * 12 11 10 15 15 N 1.31619 * 119.99663 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 120.00396 * 359.97438 * 14 12 11 17 17 H 1.48505 * 109.47274 * 89.99732 * 16 14 12 18 18 H 1.48500 * 109.47246 * 209.99718 * 16 14 12 19 19 H 1.48500 * 109.47214 * 330.00048 * 16 14 12 20 20 C 1.52997 * 109.46817 * 60.00194 * 10 9 8 21 21 C 1.52999 * 109.46944 * 275.00142 * 7 6 4 22 22 N 1.34391 * 108.45823 * 179.77423 * 3 2 1 23 23 N 1.28764 * 109.52858 * 0.22742 * 22 3 2 24 24 N 1.34812 * 126.58313 * 180.16793 * 2 1 3 25 25 C 1.46501 * 126.59315 * 359.96277 * 24 2 1 26 26 C 1.53011 * 109.47007 * 120.27633 * 25 24 2 27 27 C 1.52992 * 109.47434 * 240.27448 * 25 24 2 28 28 H 1.09005 * 109.46978 * 90.02714 * 1 2 3 29 29 H 1.09006 * 109.47081 * 210.02438 * 1 2 3 30 30 H 1.08996 * 109.47523 * 330.02463 * 1 2 3 31 31 H 0.97000 * 120.00239 * 359.97438 * 6 4 3 32 32 H 1.09002 * 109.47129 * 34.99540 * 7 6 4 33 33 H 1.09002 * 109.47153 * 59.99757 * 8 7 6 34 34 H 1.09001 * 109.46832 * 299.99948 * 8 7 6 35 35 H 1.08992 * 109.47399 * 59.99823 * 9 8 7 36 36 H 1.09004 * 109.46724 * 180.02562 * 9 8 7 37 37 H 1.08993 * 109.47662 * 180.02562 * 10 9 8 38 38 H 0.97000 * 120.00279 * 24.99489 * 11 10 9 39 39 H 0.97000 * 120.00212 * 180.02562 * 15 14 12 40 40 H 1.09002 * 109.47153 * 60.00231 * 20 10 9 41 41 H 1.09001 * 109.47289 * 180.02562 * 20 10 9 42 42 H 1.09000 * 109.47486 * 59.99569 * 21 7 6 43 43 H 1.09002 * 109.46716 * 299.99651 * 21 7 6 44 44 H 1.09002 * 109.47449 * 0.28426 * 25 24 2 45 45 H 1.08997 * 109.46633 * 59.99729 * 26 25 24 46 46 H 1.08997 * 109.46995 * 180.02562 * 26 25 24 47 47 H 1.08998 * 109.46700 * 300.00472 * 26 25 24 48 48 H 1.09005 * 109.46964 * 60.00436 * 27 25 24 49 49 H 1.09009 * 109.47536 * 179.97438 * 27 25 24 50 50 H 1.08999 * 109.47729 * 300.00371 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8737 2.5027 0.0008 5 8 0.6859 2.7627 -0.0037 6 7 2.7816 3.4987 0.0065 7 6 2.3375 4.8948 0.0078 8 6 3.4262 5.7758 0.6236 9 6 2.9620 7.2337 0.6255 10 6 2.6927 7.6852 -0.8114 11 7 3.9219 7.5650 -1.5994 12 6 4.1022 8.3456 -2.7100 13 1 3.3381 9.0494 -3.0052 14 6 5.2671 8.2321 -3.4564 15 7 5.4402 8.9820 -4.5241 16 14 6.5889 7.0152 -2.9455 17 1 6.3368 5.7064 -3.6003 18 1 7.9200 7.5274 -3.3593 19 1 6.5610 6.8442 -1.4706 20 6 1.6040 6.8041 -1.4271 21 6 2.0686 5.3457 -1.4293 22 7 3.5983 0.6789 0.0050 23 7 3.6299 -0.6084 0.0033 24 7 2.3104 -1.0825 -0.0032 25 6 1.8864 -2.4848 -0.0065 26 6 2.4343 -3.1803 -1.2544 27 6 2.4240 -3.1832 1.2440 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3634 0.8901 0.5134 31 1 3.7292 3.2913 0.0104 32 1 1.4228 4.9845 0.5939 33 1 4.3409 5.6861 0.0375 34 1 3.6177 5.4545 1.6474 35 1 2.0475 7.3231 1.2118 36 1 3.7379 7.8615 1.0638 37 1 2.3625 8.7239 -0.8101 38 1 4.6081 6.9326 -1.3345 39 1 6.2540 8.9024 -5.0459 40 1 0.6895 6.8935 -0.8408 41 1 1.4125 7.1254 -2.4510 42 1 1.2929 4.7181 -1.8680 43 1 2.9832 5.2560 -2.0153 44 1 0.7976 -2.5352 -0.0112 45 1 3.5231 -3.1299 -1.2498 46 1 2.1185 -4.2236 -1.2571 47 1 2.0513 -2.6827 -2.1453 48 1 2.0336 -2.6878 2.1330 49 1 2.1081 -4.2266 1.2418 50 1 3.5128 -3.1329 1.2487 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026584987.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:32 Heat of formation + Delta-G solvation = 28.657757 kcal Electronic energy + Delta-G solvation = -29560.056807 eV Core-core repulsion = 25622.971612 eV Total energy + Delta-G solvation = -3937.085195 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.36810 -40.94433 -39.38592 -37.39235 -36.24395 -34.61159 -33.98865 -32.73331 -31.87226 -31.65738 -29.76615 -28.55057 -28.30300 -25.38940 -25.04282 -24.41508 -23.56114 -22.57928 -21.54375 -20.99681 -20.05842 -19.78947 -18.66937 -17.60594 -17.27929 -17.11078 -16.53077 -16.36630 -15.82256 -15.54594 -15.46671 -15.28244 -15.12421 -15.02740 -14.46322 -14.27954 -14.05608 -14.01671 -13.99149 -13.70263 -13.37279 -13.25443 -13.22204 -13.04407 -12.98904 -12.94317 -12.58304 -12.54608 -12.44321 -12.29693 -12.06255 -11.96312 -11.83695 -11.70081 -11.31784 -11.27110 -11.17811 -11.02481 -10.82582 -10.30337 -9.94736 -9.23674 -7.99177 -5.29401 0.09636 0.58791 1.02940 1.35884 1.39119 1.45667 2.10730 2.22024 2.49480 3.13605 3.28585 3.32739 3.52840 3.68296 3.68965 3.78521 3.84762 3.91497 3.95607 4.08891 4.12921 4.34990 4.41272 4.49009 4.58869 4.60780 4.61062 4.64287 4.65487 4.67275 4.70182 4.72914 4.79845 4.84888 4.99523 5.10006 5.14588 5.15636 5.20505 5.23746 5.28853 5.31273 5.46312 5.53122 5.57039 5.62073 5.84245 6.26233 6.42109 6.88391 7.12835 7.13525 7.92096 8.10197 9.23054 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015945 B = 0.002721 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.577168 B =10287.602072 C =11211.087690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.131 3.869 3 C -0.134 4.134 4 C 0.605 3.395 5 O -0.556 6.556 6 N -0.708 5.708 7 C 0.158 3.842 8 C -0.120 4.120 9 C -0.111 4.111 10 C 0.167 3.833 11 N -0.745 5.745 12 C -0.216 4.216 13 H 0.057 0.943 14 C -0.068 4.068 15 N -0.987 5.987 16 Si 0.945 3.055 17 H -0.286 1.286 18 H -0.298 1.298 19 H -0.248 1.248 20 C -0.123 4.123 21 C -0.113 4.113 22 N -0.228 5.228 23 N -0.087 5.087 24 N -0.345 5.345 25 C 0.131 3.869 26 C -0.160 4.160 27 C -0.159 4.159 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.409 0.591 32 H 0.095 0.905 33 H 0.052 0.948 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.048 0.952 38 H 0.364 0.636 39 H 0.255 0.745 40 H 0.079 0.921 41 H 0.036 0.964 42 H 0.049 0.951 43 H 0.043 0.957 44 H 0.144 0.856 45 H 0.055 0.945 46 H 0.114 0.886 47 H 0.056 0.944 48 H 0.060 0.940 49 H 0.113 0.887 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.321 -28.661 16.197 35.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.008 4.008 3 C -0.274 4.274 4 C 0.390 3.610 5 O -0.435 6.435 6 N -0.357 5.357 7 C 0.054 3.946 8 C -0.158 4.158 9 C -0.150 4.150 10 C 0.059 3.941 11 N -0.390 5.390 12 C -0.348 4.348 13 H 0.075 0.925 14 C -0.259 4.259 15 N -0.639 5.639 16 Si 0.773 3.227 17 H -0.212 1.212 18 H -0.225 1.225 19 H -0.172 1.172 20 C -0.163 4.163 21 C -0.152 4.152 22 N -0.101 5.101 23 N -0.066 5.066 24 N -0.132 5.132 25 C 0.032 3.968 26 C -0.218 4.218 27 C -0.217 4.217 28 H 0.120 0.880 29 H 0.129 0.871 30 H 0.116 0.884 31 H 0.244 0.756 32 H 0.113 0.887 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.198 0.802 39 H 0.064 0.936 40 H 0.098 0.902 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.161 0.839 45 H 0.074 0.926 46 H 0.132 0.868 47 H 0.075 0.925 48 H 0.079 0.921 49 H 0.131 0.869 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.709 -28.757 16.078 34.965 hybrid contribution 0.887 -0.083 -0.758 1.169 sum -10.822 -28.840 15.321 34.404 Atomic orbital electron populations 1.20843 0.82328 1.06383 1.05615 1.22383 0.97505 0.85787 0.95154 1.21318 0.89602 0.95656 1.20826 1.16876 0.85434 0.82999 0.75665 1.90731 1.16363 1.84019 1.52353 1.45925 1.10281 1.05931 1.73532 1.20984 0.98729 0.78703 0.96152 1.21738 0.97318 0.95161 1.01617 1.21702 1.02935 0.94813 0.95532 1.20509 0.85774 0.97119 0.90674 1.42846 1.19382 1.46651 1.30077 1.19068 1.01244 1.13486 1.00973 0.92481 1.25412 1.00696 1.01896 0.97856 1.69876 1.28410 1.45262 1.20367 0.85547 0.78959 0.78905 0.79262 1.21242 1.22494 1.17236 1.21967 0.99144 0.94632 1.00563 1.21679 1.00369 0.96483 0.96630 1.74588 1.19849 1.04986 1.10702 1.81831 0.98237 1.02831 1.23746 1.50981 1.05140 1.08567 1.48544 1.22210 1.02485 0.73082 0.98999 1.22170 1.01953 1.02581 0.95107 1.22168 1.02028 1.02519 0.94973 0.87995 0.87062 0.88365 0.75591 0.88706 0.92911 0.89087 0.88558 0.91013 0.93381 0.80189 0.93642 0.90220 0.94492 0.93267 0.93842 0.83889 0.92609 0.86790 0.92521 0.92094 0.86858 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.13 9.40 71.23 0.67 -0.46 16 2 C 0.13 2.56 7.02 41.72 0.29 2.85 16 3 C -0.13 -3.53 6.99 40.82 0.29 -3.25 16 4 C 0.60 17.34 7.78 86.69 0.67 18.02 16 5 O -0.56 -17.21 14.38 -4.03 -0.06 -17.27 16 6 N -0.71 -19.61 5.07 -445.71 -2.26 -21.87 16 7 C 0.16 4.42 2.45 44.99 0.11 4.53 16 8 C -0.12 -3.15 5.22 30.59 0.16 -2.99 16 9 C -0.11 -3.04 5.61 30.60 0.17 -2.86 16 10 C 0.17 6.10 3.10 44.99 0.14 6.24 16 11 N -0.75 -34.26 4.08 -322.94 -1.32 -35.58 16 12 C -0.22 -12.40 10.41 84.03 0.87 -11.52 16 13 H 0.06 3.59 8.06 -2.91 -0.02 3.56 16 14 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 15 N -0.99 -64.84 13.97 21.65 0.30 -64.54 16 16 Si 0.95 46.92 27.73 68.60 1.90 48.82 16 17 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 18 H -0.30 -15.02 7.11 99.48 0.71 -14.32 16 19 H -0.25 -10.97 6.52 99.48 0.65 -10.32 16 20 C -0.12 -4.24 5.61 30.61 0.17 -4.07 16 21 C -0.11 -3.83 5.34 30.61 0.16 -3.67 16 22 N -0.23 -6.49 12.04 -50.00 -0.60 -7.09 16 23 N -0.09 -2.20 13.67 37.02 0.51 -1.69 16 24 N -0.35 -6.06 3.28 -313.38 -1.03 -7.09 16 25 C 0.13 1.04 3.68 44.99 0.17 1.21 16 26 C -0.16 -1.20 9.47 71.99 0.68 -0.52 16 27 C -0.16 -1.01 9.47 71.98 0.68 -0.32 16 28 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.11 0.47 7.20 -2.38 -0.02 0.45 16 30 H 0.10 1.59 6.43 -2.39 -0.02 1.58 16 31 H 0.41 10.91 8.29 -92.71 -0.77 10.14 16 32 H 0.09 2.57 7.58 -2.39 -0.02 2.55 16 33 H 0.05 1.58 6.51 -2.39 -0.02 1.56 16 34 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 38 H 0.36 16.21 3.93 -92.71 -0.36 15.85 16 39 H 0.25 16.03 8.31 -92.71 -0.77 15.26 16 40 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.04 1.71 7.61 -2.39 -0.02 1.70 16 44 H 0.14 0.20 6.79 -2.39 -0.02 0.19 16 45 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 47 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 49 H 0.11 0.04 8.14 -2.38 -0.02 0.02 16 50 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -78.38 396.63 2.91 -75.46 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: -0.24 Total: 31.29 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: 5.71 Total: -0.44 kcal Atomic # 7 Polarization: -133.47 SS G_CDS: -4.40 Total: -137.87 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.06 Total: -17.27 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 1.90 Total: 48.82 kcal Total: -78.38 2.91 -75.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026584987.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.118 kcal (2) G-P(sol) polarization free energy of solvation -78.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds