Wall clock time and date at job start Tue Mar 31 2020 20:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36934 * 119.99889 * 2 1 4 4 H 1.07999 * 119.99966 * 203.06888 * 3 2 1 5 5 C 1.38817 * 120.00123 * 23.06002 * 3 2 1 6 6 N 1.31614 * 119.99772 * 16.49619 * 5 3 2 7 7 Si 1.86797 * 119.99875 * 196.49281 * 5 3 2 8 8 H 1.48497 * 109.47366 * 60.00270 * 7 5 3 9 9 H 1.48500 * 109.47081 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47323 * 300.00095 * 7 5 3 11 11 C 1.46496 * 120.00067 * 179.97438 * 2 1 3 12 12 H 1.08995 * 109.52263 * 180.02562 * 11 2 1 13 13 C 1.53035 * 109.49615 * 300.16109 * 11 2 1 14 14 C 1.53039 * 109.53829 * 181.31523 * 13 11 2 15 15 C 1.53627 * 109.24528 * 298.51181 * 14 13 11 16 16 N 1.46927 * 108.54149 * 54.85418 * 15 14 13 17 17 C 1.34774 * 120.63319 * 126.37468 * 16 15 14 18 18 O 1.21593 * 120.00042 * 186.85687 * 17 16 15 19 19 C 1.47524 * 119.99441 * 6.84907 * 17 16 15 20 20 C 1.36598 * 125.76602 * 186.49620 * 19 17 16 21 21 N 1.34813 * 106.83820 * 179.97438 * 20 19 17 22 22 C 1.46501 * 126.59347 * 180.02562 * 21 20 19 23 23 C 1.52999 * 109.47318 * 74.97551 * 22 21 20 24 24 C 1.53004 * 109.46963 * 194.97191 * 22 21 20 25 25 C 1.52997 * 109.47302 * 314.97218 * 22 21 20 26 26 N 1.40211 * 106.81405 * 0.02562 * 21 20 19 27 27 N 1.28764 * 108.36191 * 0.02562 * 26 21 20 28 28 C 1.46932 * 118.73472 * 306.09791 * 16 15 14 29 29 H 1.09006 * 109.47259 * 275.04428 * 1 2 3 30 30 H 1.09008 * 109.47149 * 35.04049 * 1 2 3 31 31 H 1.08997 * 109.47141 * 155.04177 * 1 2 3 32 32 H 0.97004 * 119.99757 * 179.97438 * 6 5 3 33 33 H 1.08999 * 109.46345 * 301.33315 * 13 11 2 34 34 H 1.09003 * 109.46327 * 61.30052 * 13 11 2 35 35 H 1.09008 * 109.49977 * 58.58582 * 14 13 11 36 36 H 1.09002 * 109.49933 * 178.68262 * 14 13 11 37 37 H 1.08998 * 109.73664 * 295.12025 * 15 14 13 38 38 H 1.08991 * 109.66802 * 174.54926 * 15 14 13 39 39 H 1.07998 * 126.58221 * 0.02562 * 20 19 17 40 40 H 1.09005 * 109.47412 * 59.99686 * 23 22 21 41 41 H 1.09002 * 109.47082 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.46777 * 299.99814 * 23 22 21 43 43 H 1.09000 * 109.46948 * 60.00134 * 24 22 21 44 44 H 1.08996 * 109.46935 * 179.97438 * 24 22 21 45 45 H 1.08989 * 109.47285 * 300.00150 * 24 22 21 46 46 H 1.09000 * 109.47085 * 60.00007 * 25 22 21 47 47 H 1.08996 * 109.47739 * 180.02562 * 25 22 21 48 48 H 1.09000 * 109.47206 * 300.00232 * 25 22 21 49 49 H 1.09003 * 109.58419 * 173.65432 * 28 16 15 50 50 H 1.08994 * 109.58576 * 293.92531 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1649 1.2233 -0.3665 5 6 1.5388 2.3401 0.4709 6 7 0.4503 2.2555 1.2059 7 14 2.2617 4.0131 0.0613 8 1 2.2847 4.1951 -1.4123 9 1 1.4293 5.0766 0.6789 10 1 3.6460 4.0977 0.5923 11 6 2.1975 -1.2687 0.0006 12 1 3.2693 -1.0705 0.0009 13 6 1.8252 -2.0729 1.2482 14 6 2.6145 -3.3839 1.2665 15 6 2.2450 -4.2147 0.0282 16 7 2.4682 -3.3931 -1.1692 17 6 3.2410 -3.8439 -2.1772 18 8 3.5201 -3.1090 -3.1048 19 6 3.7484 -5.2290 -2.1548 20 6 4.6358 -5.7686 -3.0420 21 7 4.8330 -7.0486 -2.6674 22 6 5.7075 -8.0251 -3.3216 23 6 7.1665 -7.7069 -2.9885 24 6 5.3654 -9.4305 -2.8229 25 6 5.5039 -7.9578 -4.8365 26 7 4.0402 -7.2655 -1.5315 27 7 3.4149 -6.1735 -1.2587 28 6 1.8278 -2.0731 -1.2496 29 1 -0.3634 0.0904 1.0237 30 1 -0.3634 0.8415 -0.5901 31 1 -0.3633 -0.9317 -0.4336 32 1 0.0236 3.0620 1.5353 33 1 2.0646 -1.4925 2.1392 34 1 0.7575 -2.2920 1.2338 35 1 3.6825 -3.1658 1.2559 36 1 2.3663 -3.9455 2.1672 37 1 1.1963 -4.5070 0.0805 38 1 2.8727 -5.1046 -0.0171 39 1 5.0926 -5.2661 -3.8817 40 1 7.3116 -7.7548 -1.9092 41 1 7.8171 -8.4337 -3.4748 42 1 7.4102 -6.7056 -3.3437 43 1 4.3260 -9.6573 -3.0602 44 1 6.0157 -10.1571 -3.3099 45 1 5.5105 -9.4785 -1.7438 46 1 5.7476 -6.9566 -5.1917 47 1 6.1541 -8.6847 -5.3232 48 1 4.4645 -8.1846 -5.0738 49 1 2.1801 -1.5496 -2.1384 50 1 0.7459 -2.1944 -1.3020 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027436468.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:08 Heat of formation + Delta-G solvation = 95.591331 kcal Electronic energy + Delta-G solvation = -29874.565999 eV Core-core repulsion = 25940.383262 eV Total energy + Delta-G solvation = -3934.182737 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.48217 -39.63121 -37.78207 -37.24962 -34.98821 -32.52061 -32.03730 -31.26001 -30.86856 -28.64016 -28.10873 -28.01975 -25.94028 -25.35994 -24.24185 -23.39210 -22.56548 -21.45138 -20.78587 -19.57625 -18.58431 -17.36463 -16.67859 -16.48548 -16.26607 -15.80425 -15.13577 -14.96471 -14.73651 -14.58179 -14.32453 -13.91055 -13.81349 -13.55311 -13.29042 -13.19051 -13.02339 -12.86321 -12.63717 -12.50730 -12.44462 -12.36362 -12.22602 -11.98561 -11.91395 -11.61701 -11.40345 -10.92090 -10.75441 -10.73627 -10.58970 -10.43217 -10.20262 -10.14995 -10.04426 -9.82409 -9.73883 -9.51097 -9.38551 -8.53540 -8.19790 -6.67332 -5.66116 -3.11306 0.99840 1.66731 1.72841 3.20782 3.41549 3.44976 3.49741 3.52368 3.77499 4.03762 4.07933 4.15867 4.50472 4.56929 4.73322 4.82845 4.87492 4.96928 5.00575 5.02614 5.15588 5.18866 5.24917 5.37765 5.39371 5.46509 5.48758 5.51777 5.59351 5.67235 5.74837 5.87348 5.96921 6.15670 6.19572 6.26433 6.35846 6.40788 6.54444 6.64177 6.77625 6.91000 7.06009 7.12340 7.40565 7.66711 7.77629 7.86196 7.88290 8.37102 8.47700 9.29708 9.93404 10.42671 11.38505 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.023911 B = 0.002473 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.749685 B =11318.394750 C =11877.225361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.591 5.591 3 C -0.255 4.255 4 H 0.067 0.933 5 C 0.003 3.997 6 N -0.905 5.905 7 Si 0.903 3.097 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.170 3.830 12 H 0.065 0.935 13 C -0.132 4.132 14 C -0.130 4.130 15 C 0.085 3.915 16 N -0.587 5.587 17 C 0.597 3.403 18 O -0.544 6.544 19 C -0.090 4.090 20 C 0.090 3.910 21 N -0.351 5.351 22 C 0.169 3.831 23 C -0.162 4.162 24 C -0.148 4.148 25 C -0.163 4.163 26 N -0.069 5.069 27 N -0.205 5.205 28 C 0.097 3.903 29 H 0.032 0.968 30 H 0.038 0.962 31 H 0.001 0.999 32 H 0.252 0.748 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.123 0.877 39 H 0.200 0.800 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.087 0.913 48 H 0.070 0.930 49 H 0.090 0.910 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.792 -25.468 -9.040 29.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.313 5.313 3 C -0.384 4.384 4 H 0.085 0.915 5 C -0.196 4.196 6 N -0.549 5.549 7 Si 0.733 3.267 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.061 3.939 12 H 0.083 0.917 13 C -0.172 4.172 14 C -0.169 4.169 15 C -0.038 4.038 16 N -0.318 5.318 17 C 0.382 3.618 18 O -0.421 6.421 19 C -0.229 4.229 20 C -0.066 4.066 21 N -0.137 5.137 22 C 0.087 3.913 23 C -0.220 4.220 24 C -0.206 4.206 25 C -0.222 4.222 26 N -0.047 5.047 27 N -0.078 5.078 28 C -0.027 4.027 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.020 0.980 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.140 0.860 39 H 0.217 0.783 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.106 0.894 48 H 0.089 0.911 49 H 0.108 0.892 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.397 -25.955 -8.411 29.198 hybrid contribution 0.565 1.655 -0.805 1.925 sum 10.962 -24.301 -9.216 28.207 Atomic orbital electron populations 1.20783 0.82790 0.95456 0.99506 1.43884 1.01726 1.00075 1.85621 1.19171 0.98511 0.85310 1.35420 0.91482 1.24974 0.98312 0.98382 0.97914 1.70075 1.21784 1.27261 1.35815 0.86359 0.78258 0.83938 0.78148 1.21074 1.21731 1.20988 1.20570 0.96421 0.86160 0.90734 0.91707 1.22127 0.99450 0.94863 1.00746 1.22002 1.00679 0.97216 0.97030 1.22607 1.02579 0.95062 0.83582 1.47972 1.47495 1.18760 1.17620 1.16833 0.78555 0.83769 0.82644 1.90795 1.59053 1.56464 1.35827 1.21570 1.06069 0.97010 0.98219 1.23222 0.97829 0.85172 1.00374 1.50780 1.31979 1.09199 1.21786 1.21088 0.88981 0.88385 0.92844 1.22294 0.92804 1.03364 1.03515 1.21990 1.03107 0.92373 1.03126 1.22303 1.03936 1.04090 0.91824 1.81955 1.05971 1.17004 0.99808 1.74435 1.16458 0.97246 1.19684 1.22468 0.96793 0.81214 1.02177 0.94981 0.94330 0.98021 0.93785 0.91622 0.92526 0.92151 0.91426 0.91809 0.86011 0.78289 0.91164 0.89664 0.91284 0.91225 0.90184 0.90588 0.91047 0.89421 0.91116 0.89160 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.96 8.05 59.85 0.48 4.44 16 2 N -0.59 -15.13 2.81 -173.35 -0.49 -15.61 16 3 C -0.25 -7.18 9.56 -15.06 -0.14 -7.33 16 4 H 0.07 1.88 7.85 -52.49 -0.41 1.46 16 5 C 0.00 0.08 5.02 -17.43 -0.09 -0.01 16 6 N -0.90 -26.76 10.92 55.49 0.61 -26.16 16 7 Si 0.90 22.40 29.58 -169.99 -5.03 17.37 16 8 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 9 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 C 0.17 3.65 2.74 -67.82 -0.19 3.47 16 12 H 0.06 1.47 7.87 -51.93 -0.41 1.07 16 13 C -0.13 -2.50 5.14 -26.69 -0.14 -2.63 16 14 C -0.13 -2.00 6.10 -26.39 -0.16 -2.16 16 15 C 0.09 1.27 6.12 -3.48 -0.02 1.25 16 16 N -0.59 -10.08 2.97 -173.73 -0.52 -10.60 16 17 C 0.60 10.18 7.68 -12.48 -0.10 10.09 16 18 O -0.54 -10.65 16.30 5.28 0.09 -10.56 16 19 C -0.09 -1.25 6.70 -83.55 -0.56 -1.81 16 20 C 0.09 0.96 10.43 -16.83 -0.18 0.78 16 21 N -0.35 -3.26 3.44 -48.35 -0.17 -3.43 16 22 C 0.17 0.94 1.25 -131.82 -0.16 0.78 16 23 C -0.16 -0.71 8.73 37.16 0.32 -0.38 16 24 C -0.15 -0.72 8.11 37.16 0.30 -0.42 16 25 C -0.16 -0.63 8.30 37.16 0.31 -0.32 16 26 N -0.07 -0.83 12.91 60.35 0.78 -0.05 16 27 N -0.21 -2.82 8.77 32.85 0.29 -2.54 16 28 C 0.10 1.89 5.79 -3.71 -0.02 1.87 16 29 H 0.03 0.86 7.34 -51.93 -0.38 0.48 16 30 H 0.04 1.03 7.43 -51.92 -0.39 0.64 16 31 H 0.00 0.03 6.36 -51.93 -0.33 -0.30 16 32 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.06 1.07 7.71 -51.93 -0.40 0.67 16 35 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.12 1.75 4.08 -82.99 -0.34 1.41 16 39 H 0.20 1.61 7.63 -52.49 -0.40 1.21 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 45 H 0.08 0.45 8.06 -51.94 -0.42 0.03 16 46 H 0.07 0.26 7.44 -51.93 -0.39 -0.12 16 47 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 48 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.09 1.94 7.00 -51.93 -0.36 1.57 16 50 H 0.06 1.25 6.51 -51.93 -0.34 0.92 16 LS Contribution 391.92 15.07 5.91 5.91 Total: -1.00 -33.43 391.92 -7.22 -40.65 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -8.35 Total: -2.60 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -0.34 Total: 7.62 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 0.50 Total: -58.39 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.37 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.43 -7.22 -40.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027436468.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.241 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds