Wall clock time and date at job start Tue Mar 31 2020 20:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36934 * 119.99889 * 2 1 4 4 H 1.07999 * 119.99966 * 203.06888 * 3 2 1 5 5 C 1.38817 * 120.00123 * 23.06002 * 3 2 1 6 6 N 1.31614 * 119.99772 * 16.49619 * 5 3 2 7 7 Si 1.86797 * 119.99875 * 196.49281 * 5 3 2 8 8 H 1.48497 * 109.47366 * 60.00270 * 7 5 3 9 9 H 1.48500 * 109.47081 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47323 * 300.00095 * 7 5 3 11 11 C 1.46496 * 120.00067 * 179.97438 * 2 1 3 12 12 H 1.08995 * 109.52263 * 180.02562 * 11 2 1 13 13 C 1.53035 * 109.49615 * 300.16109 * 11 2 1 14 14 C 1.53039 * 109.53829 * 181.31523 * 13 11 2 15 15 C 1.53627 * 109.24528 * 298.51181 * 14 13 11 16 16 N 1.46927 * 108.54149 * 54.85418 * 15 14 13 17 17 C 1.34774 * 120.63319 * 126.37468 * 16 15 14 18 18 O 1.21593 * 120.00042 * 186.85687 * 17 16 15 19 19 C 1.47524 * 119.99441 * 6.84907 * 17 16 15 20 20 C 1.36598 * 125.76602 * 186.49620 * 19 17 16 21 21 N 1.34813 * 106.83820 * 179.97438 * 20 19 17 22 22 C 1.46501 * 126.59347 * 180.02562 * 21 20 19 23 23 C 1.52999 * 109.47318 * 74.97551 * 22 21 20 24 24 C 1.53004 * 109.46963 * 194.97191 * 22 21 20 25 25 C 1.52997 * 109.47302 * 314.97218 * 22 21 20 26 26 N 1.40211 * 106.81405 * 0.02562 * 21 20 19 27 27 N 1.28764 * 108.36191 * 0.02562 * 26 21 20 28 28 C 1.46932 * 118.73472 * 306.09791 * 16 15 14 29 29 H 1.09006 * 109.47259 * 275.04428 * 1 2 3 30 30 H 1.09008 * 109.47149 * 35.04049 * 1 2 3 31 31 H 1.08997 * 109.47141 * 155.04177 * 1 2 3 32 32 H 0.97004 * 119.99757 * 179.97438 * 6 5 3 33 33 H 1.08999 * 109.46345 * 301.33315 * 13 11 2 34 34 H 1.09003 * 109.46327 * 61.30052 * 13 11 2 35 35 H 1.09008 * 109.49977 * 58.58582 * 14 13 11 36 36 H 1.09002 * 109.49933 * 178.68262 * 14 13 11 37 37 H 1.08998 * 109.73664 * 295.12025 * 15 14 13 38 38 H 1.08991 * 109.66802 * 174.54926 * 15 14 13 39 39 H 1.07998 * 126.58221 * 0.02562 * 20 19 17 40 40 H 1.09005 * 109.47412 * 59.99686 * 23 22 21 41 41 H 1.09002 * 109.47082 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.46777 * 299.99814 * 23 22 21 43 43 H 1.09000 * 109.46948 * 60.00134 * 24 22 21 44 44 H 1.08996 * 109.46935 * 179.97438 * 24 22 21 45 45 H 1.08989 * 109.47285 * 300.00150 * 24 22 21 46 46 H 1.09000 * 109.47085 * 60.00007 * 25 22 21 47 47 H 1.08996 * 109.47739 * 180.02562 * 25 22 21 48 48 H 1.09000 * 109.47206 * 300.00232 * 25 22 21 49 49 H 1.09003 * 109.58419 * 173.65432 * 28 16 15 50 50 H 1.08994 * 109.58576 * 293.92531 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1649 1.2233 -0.3665 5 6 1.5388 2.3401 0.4709 6 7 0.4503 2.2555 1.2059 7 14 2.2617 4.0131 0.0613 8 1 2.2847 4.1951 -1.4123 9 1 1.4293 5.0766 0.6789 10 1 3.6460 4.0977 0.5923 11 6 2.1975 -1.2687 0.0006 12 1 3.2693 -1.0705 0.0009 13 6 1.8252 -2.0729 1.2482 14 6 2.6145 -3.3839 1.2665 15 6 2.2450 -4.2147 0.0282 16 7 2.4682 -3.3931 -1.1692 17 6 3.2410 -3.8439 -2.1772 18 8 3.5201 -3.1090 -3.1048 19 6 3.7484 -5.2290 -2.1548 20 6 4.6358 -5.7686 -3.0420 21 7 4.8330 -7.0486 -2.6674 22 6 5.7075 -8.0251 -3.3216 23 6 7.1665 -7.7069 -2.9885 24 6 5.3654 -9.4305 -2.8229 25 6 5.5039 -7.9578 -4.8365 26 7 4.0402 -7.2655 -1.5315 27 7 3.4149 -6.1735 -1.2587 28 6 1.8278 -2.0731 -1.2496 29 1 -0.3634 0.0904 1.0237 30 1 -0.3634 0.8415 -0.5901 31 1 -0.3633 -0.9317 -0.4336 32 1 0.0236 3.0620 1.5353 33 1 2.0646 -1.4925 2.1392 34 1 0.7575 -2.2920 1.2338 35 1 3.6825 -3.1658 1.2559 36 1 2.3663 -3.9455 2.1672 37 1 1.1963 -4.5070 0.0805 38 1 2.8727 -5.1046 -0.0171 39 1 5.0926 -5.2661 -3.8817 40 1 7.3116 -7.7548 -1.9092 41 1 7.8171 -8.4337 -3.4748 42 1 7.4102 -6.7056 -3.3437 43 1 4.3260 -9.6573 -3.0602 44 1 6.0157 -10.1571 -3.3099 45 1 5.5105 -9.4785 -1.7438 46 1 5.7476 -6.9566 -5.1917 47 1 6.1541 -8.6847 -5.3232 48 1 4.4645 -8.1846 -5.0738 49 1 2.1801 -1.5496 -2.1384 50 1 0.7459 -2.1944 -1.3020 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027436468.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:07 Heat of formation + Delta-G solvation = 74.757838 kcal Electronic energy + Delta-G solvation = -29875.469407 eV Core-core repulsion = 25940.383262 eV Total energy + Delta-G solvation = -3935.086145 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.38977 -41.00134 -38.87835 -38.29940 -36.75940 -34.04401 -33.02042 -32.87224 -32.03896 -30.28051 -28.46640 -28.40388 -28.03444 -26.70422 -25.52310 -24.69961 -23.77087 -22.98909 -21.68082 -20.89669 -19.95392 -18.78917 -18.16709 -17.62264 -17.23636 -17.06992 -16.76044 -16.09748 -15.86700 -15.68724 -15.41310 -15.16841 -15.01230 -14.89356 -14.81224 -14.47464 -13.97940 -13.82655 -13.67756 -13.63513 -13.37201 -13.27318 -13.16165 -12.90854 -12.82258 -12.75878 -12.60191 -12.44782 -12.40724 -12.30269 -12.04204 -11.99051 -11.91961 -11.78052 -11.45946 -11.39266 -11.27269 -10.88359 -10.64161 -10.38280 -9.68864 -8.75192 -7.83079 -5.31175 0.14073 0.57332 1.02405 1.45207 1.48278 1.54978 1.90226 2.18066 2.51768 3.07474 3.23340 3.28552 3.60335 3.63867 3.66685 3.78502 3.91607 3.97531 4.07503 4.13341 4.18177 4.29454 4.36082 4.42098 4.58577 4.61332 4.66587 4.69461 4.70993 4.75827 4.80514 4.81274 4.82546 4.91175 5.02974 5.09269 5.12115 5.14173 5.20780 5.25930 5.30986 5.42782 5.48035 5.52611 5.60518 5.65830 5.70251 6.32178 6.36225 6.83793 7.08388 7.14644 7.85731 8.29774 9.19154 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.023911 B = 0.002473 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.749685 B =11318.394750 C =11877.225361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.607 5.607 3 C -0.268 4.268 4 H 0.062 0.938 5 C -0.048 4.048 6 N -0.932 5.932 7 Si 0.966 3.034 8 H -0.281 1.281 9 H -0.291 1.291 10 H -0.276 1.276 11 C 0.170 3.830 12 H 0.045 0.955 13 C -0.121 4.121 14 C -0.120 4.120 15 C 0.089 3.911 16 N -0.591 5.591 17 C 0.596 3.404 18 O -0.576 6.576 19 C -0.116 4.116 20 C 0.108 3.892 21 N -0.336 5.336 22 C 0.159 3.841 23 C -0.159 4.159 24 C -0.147 4.147 25 C -0.162 4.162 26 N -0.078 5.078 27 N -0.220 5.220 28 C 0.113 3.887 29 H 0.009 0.991 30 H 0.012 0.988 31 H 0.033 0.967 32 H 0.249 0.751 33 H 0.042 0.958 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.135 0.865 39 H 0.225 0.775 40 H 0.056 0.944 41 H 0.113 0.887 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.110 0.890 45 H 0.062 0.938 46 H 0.075 0.925 47 H 0.115 0.885 48 H 0.060 0.940 49 H 0.066 0.934 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.439 -27.910 -10.141 32.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.330 5.330 3 C -0.398 4.398 4 H 0.080 0.920 5 C -0.244 4.244 6 N -0.578 5.578 7 Si 0.794 3.206 8 H -0.207 1.207 9 H -0.217 1.217 10 H -0.202 1.202 11 C 0.062 3.938 12 H 0.063 0.937 13 C -0.161 4.161 14 C -0.159 4.159 15 C -0.034 4.034 16 N -0.322 5.322 17 C 0.384 3.616 18 O -0.456 6.456 19 C -0.255 4.255 20 C -0.050 4.050 21 N -0.122 5.122 22 C 0.078 3.922 23 C -0.217 4.217 24 C -0.204 4.204 25 C -0.220 4.220 26 N -0.057 5.057 27 N -0.093 5.093 28 C -0.011 4.011 29 H 0.028 0.972 30 H 0.031 0.969 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.093 0.907 38 H 0.152 0.848 39 H 0.242 0.758 40 H 0.075 0.925 41 H 0.132 0.868 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.128 0.872 45 H 0.081 0.919 46 H 0.094 0.906 47 H 0.133 0.867 48 H 0.079 0.921 49 H 0.085 0.915 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.072 -28.472 -9.506 32.353 hybrid contribution 0.154 2.259 -0.531 2.326 sum 12.226 -26.213 -10.037 30.616 Atomic orbital electron populations 1.20523 0.82611 0.95921 0.97835 1.44076 1.02087 1.00902 1.85898 1.19426 0.98576 0.86777 1.35048 0.92004 1.25713 0.98978 1.01604 0.98062 1.70220 1.22982 1.27775 1.36802 0.85360 0.77715 0.79672 0.77817 1.20727 1.21661 1.20205 1.20661 0.94889 0.85326 0.92934 0.93654 1.21944 1.00110 0.95996 0.98040 1.21946 0.99754 0.95472 0.98691 1.22745 1.03585 0.94861 0.82190 1.48004 1.47590 1.17934 1.18697 1.17200 0.77777 0.84810 0.81863 1.90767 1.60195 1.57728 1.36915 1.21230 1.08228 0.95812 1.00235 1.23538 0.96260 0.85380 0.99835 1.51151 1.31062 1.09338 1.20623 1.21608 0.88996 0.87775 0.93788 1.22321 0.92105 1.04332 1.02946 1.22022 1.03184 0.92624 1.02616 1.22350 1.04054 1.05281 0.90271 1.81878 1.06403 1.16454 1.00965 1.74322 1.17210 0.97512 1.20218 1.22014 0.96982 0.82266 0.99848 0.97248 0.96893 0.94833 0.94149 0.93868 0.92292 0.92518 0.88474 0.90704 0.84799 0.75832 0.92513 0.86807 0.91279 0.92308 0.87192 0.91865 0.90634 0.86667 0.92067 0.91510 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.95 8.05 127.77 1.03 9.98 16 2 N -0.61 -31.88 2.81 -702.35 -1.97 -33.86 16 3 C -0.27 -15.52 9.56 84.04 0.80 -14.71 16 4 H 0.06 3.56 7.85 -2.91 -0.02 3.54 16 5 C -0.05 -2.78 5.02 84.86 0.43 -2.35 16 6 N -0.93 -56.41 10.92 21.65 0.24 -56.17 16 7 Si 0.97 46.79 29.58 68.60 2.03 48.82 16 8 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 9 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 11 C 0.17 7.44 2.74 45.07 0.12 7.56 16 12 H 0.05 2.13 7.87 -2.39 -0.02 2.12 16 13 C -0.12 -4.58 5.14 30.62 0.16 -4.42 16 14 C -0.12 -3.52 6.10 30.82 0.19 -3.33 16 15 C 0.09 2.53 6.12 86.51 0.53 3.06 16 16 N -0.59 -20.17 2.97 -821.84 -2.44 -22.60 16 17 C 0.60 20.26 7.68 86.69 0.67 20.92 16 18 O -0.58 -22.78 16.30 -4.01 -0.07 -22.85 16 19 C -0.12 -3.13 6.70 40.82 0.27 -2.85 16 20 C 0.11 2.10 10.43 83.85 0.87 2.97 16 21 N -0.34 -5.58 3.44 -306.90 -1.06 -6.64 16 22 C 0.16 1.32 1.25 3.60 0.00 1.33 16 23 C -0.16 -0.90 8.73 71.98 0.63 -0.28 16 24 C -0.15 -1.06 8.11 71.98 0.58 -0.48 16 25 C -0.16 -0.72 8.30 71.98 0.60 -0.12 16 26 N -0.08 -1.78 12.91 37.02 0.48 -1.30 16 27 N -0.22 -5.78 8.77 -50.00 -0.44 -6.22 16 28 C 0.11 4.48 5.79 86.36 0.50 4.98 16 29 H 0.01 0.51 7.34 -2.38 -0.02 0.49 16 30 H 0.01 0.69 7.43 -2.38 -0.02 0.67 16 31 H 0.03 1.45 6.36 -2.39 -0.02 1.44 16 32 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 33 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.06 2.19 7.71 -2.39 -0.02 2.17 16 35 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.14 3.65 4.08 -42.58 -0.17 3.48 16 39 H 0.23 3.09 7.63 -2.91 -0.02 3.07 16 40 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 41 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 42 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 45 H 0.06 0.64 8.06 -2.39 -0.02 0.62 16 46 H 0.07 0.30 7.44 -2.39 -0.02 0.29 16 47 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 48 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 49 H 0.07 2.96 7.00 -2.39 -0.02 2.94 16 50 H 0.07 2.66 6.51 -2.39 -0.02 2.65 16 Total: -1.00 -74.64 391.92 4.92 -69.72 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 0.76 Total: 8.84 kcal Atomic # 6 Polarization: 14.87 SS G_CDS: 7.39 Total: 22.25 kcal Atomic # 7 Polarization: -121.60 SS G_CDS: -5.19 Total: -126.79 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.07 Total: -22.85 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -74.64 4.92 -69.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027436468.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.481 kcal (2) G-P(sol) polarization free energy of solvation -74.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds