Wall clock time and date at job start Tue Mar 31 2020 20:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47124 * 2 1 4 4 C 1.36595 * 126.57841 * 270.02221 * 3 2 1 5 5 C 1.47522 * 125.77416 * 0.03945 * 4 3 2 6 6 O 1.21598 * 119.99593 * 6.20729 * 5 4 3 7 7 N 1.34769 * 120.00212 * 186.20172 * 5 4 3 8 8 C 1.46930 * 120.63250 * 186.43981 * 7 5 4 9 9 C 1.53189 * 108.89159 * 233.68432 * 8 7 5 10 10 C 1.53046 * 109.31468 * 305.29008 * 9 8 7 11 11 C 1.53042 * 109.53498 * 61.36619 * 10 9 8 12 12 H 1.08994 * 109.50072 * 58.62155 * 11 10 9 13 13 N 1.46502 * 109.49708 * 178.68808 * 11 10 9 14 14 C 1.46494 * 120.00044 * 59.99778 * 13 11 10 15 15 C 1.36938 * 119.99637 * 240.00032 * 13 11 10 16 16 H 1.07994 * 120.00263 * 316.50898 * 15 13 11 17 17 C 1.38818 * 119.99655 * 136.51037 * 15 13 11 18 18 N 1.31616 * 119.99836 * 179.49519 * 17 15 13 19 19 Si 1.86803 * 120.00146 * 359.49044 * 17 15 13 20 20 H 1.48502 * 109.47069 * 86.37528 * 19 17 15 21 21 H 1.48502 * 109.47132 * 206.37418 * 19 17 15 22 22 H 1.48495 * 109.47074 * 326.37204 * 19 17 15 23 23 C 1.47211 * 120.81408 * 6.58498 * 7 5 4 24 24 N 1.34404 * 108.45520 * 179.76963 * 4 3 2 25 25 N 1.28758 * 109.52556 * 0.23410 * 24 4 3 26 26 N 1.34815 * 126.57789 * 90.18871 * 3 2 1 27 27 C 1.46500 * 126.59832 * 0.02562 * 26 3 2 28 28 C 1.52995 * 109.46859 * 270.26978 * 27 26 3 29 29 H 1.08998 * 109.47387 * 300.00207 * 1 2 3 30 30 H 1.09004 * 109.47319 * 59.99686 * 1 2 3 31 31 H 1.09002 * 109.47229 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47036 * 240.00419 * 2 1 3 33 33 H 1.08997 * 109.47048 * 120.00072 * 2 1 3 34 34 H 1.09000 * 109.59066 * 113.82422 * 8 7 5 35 35 H 1.08996 * 109.58405 * 353.53898 * 8 7 5 36 36 H 1.09001 * 109.50195 * 65.24111 * 9 8 7 37 37 H 1.09003 * 109.50109 * 185.30803 * 9 8 7 38 38 H 1.08993 * 109.46289 * 181.38685 * 10 9 8 39 39 H 1.09004 * 109.45736 * 301.34991 * 10 9 8 40 40 H 1.09004 * 109.47474 * 86.81131 * 14 13 11 41 41 H 1.09009 * 109.47194 * 206.81219 * 14 13 11 42 42 H 1.09002 * 109.47479 * 326.80675 * 14 13 11 43 43 H 0.96995 * 120.00053 * 179.97438 * 18 17 15 44 44 H 1.08997 * 109.53290 * 6.53113 * 23 7 5 45 45 H 1.08998 * 109.55638 * 246.15581 * 23 7 5 46 46 H 1.09000 * 109.46793 * 30.26609 * 27 26 3 47 47 H 1.09002 * 109.47307 * 150.26698 * 27 26 3 48 48 H 1.08998 * 109.46871 * 179.97438 * 28 27 26 49 49 H 1.08993 * 109.47433 * 299.99693 * 28 27 26 50 50 H 1.08999 * 109.47036 * 60.00145 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3033 2.1884 -1.0969 5 6 2.1529 1.7672 -2.5027 6 8 1.6508 0.6912 -2.7645 7 7 2.5719 2.5750 -3.4967 8 6 2.3033 2.2356 -4.9008 9 6 3.6244 2.2501 -5.6761 10 6 4.3115 3.6036 -5.4801 11 6 4.6204 3.8105 -3.9956 12 1 5.2596 3.0020 -3.6408 13 7 5.3062 5.0921 -3.8128 14 6 4.6489 6.3383 -4.2141 15 6 6.5616 5.1251 -3.2668 16 1 6.7920 4.5159 -2.4054 17 6 7.5380 5.9418 -3.8206 18 7 8.7417 5.9810 -3.2899 19 14 7.1435 6.9848 -5.3193 20 1 6.5543 8.2761 -4.8825 21 1 8.3897 7.2431 -6.0845 22 1 6.1731 6.2645 -6.1821 23 6 3.3106 3.8136 -3.2011 24 7 2.7244 3.3944 -0.6788 25 7 2.7370 3.4233 0.6083 26 7 2.3035 2.1771 1.0826 27 6 2.1670 1.7756 2.4849 28 6 0.7572 2.1100 2.9762 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6199 2.9685 -5.3297 35 1 1.8571 1.2428 -4.9578 36 1 4.2726 1.4561 -5.3054 37 1 3.4259 2.0926 -6.7363 38 1 5.2399 3.6255 -6.0507 39 1 3.6526 4.3991 -5.8283 40 1 4.0304 6.7034 -3.3942 41 1 5.4044 7.0848 -4.4597 42 1 4.0229 6.1541 -5.0873 43 1 9.4241 6.5513 -3.6770 44 1 3.5302 3.8613 -2.1346 45 1 2.7092 4.6752 -3.4914 46 1 2.3378 0.7027 2.5739 47 1 2.8990 2.3114 3.0892 48 1 0.6555 1.8109 4.0194 49 1 0.5863 3.1828 2.8872 50 1 0.0252 1.5742 2.3719 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027572696.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:13 Heat of formation + Delta-G solvation = 98.725935 kcal Electronic energy + Delta-G solvation = -30802.396104 eV Core-core repulsion = 26868.349293 eV Total energy + Delta-G solvation = -3934.046811 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.34426 -39.64482 -37.50888 -36.00315 -35.03959 -33.94062 -32.47136 -31.63837 -30.72784 -29.85695 -29.18263 -26.13395 -25.58110 -24.82181 -24.10850 -23.54873 -22.91722 -21.51363 -20.34804 -19.78390 -18.86814 -17.49194 -16.74043 -16.39418 -16.02985 -15.90412 -15.45326 -15.04975 -14.82295 -14.73657 -14.24365 -14.05967 -13.94782 -13.64030 -13.53868 -13.23205 -12.97672 -12.71712 -12.63460 -12.48801 -12.42280 -12.38374 -12.34475 -12.08072 -11.85559 -11.51113 -11.40284 -11.19137 -10.97485 -10.91843 -10.50219 -10.40820 -10.33213 -10.10758 -9.95234 -9.81712 -9.58428 -9.26245 -9.12908 -8.56712 -8.28243 -6.67118 -5.88420 -3.46154 1.11937 1.80520 1.95581 3.17470 3.34105 3.42421 3.47227 3.52713 4.06704 4.12564 4.41221 4.46053 4.54416 4.55881 4.71144 4.84262 4.98821 5.02880 5.06976 5.20508 5.23143 5.29162 5.30961 5.40461 5.47538 5.50737 5.54667 5.60760 5.62225 5.70387 5.77960 5.90210 5.96868 5.99411 6.10529 6.17209 6.25168 6.34950 6.36607 6.44759 6.51978 6.55663 6.72581 6.84099 6.98120 7.08032 7.61016 8.02165 8.18716 8.34452 8.48085 9.02893 9.75084 10.17403 11.25127 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014313 B = 0.003716 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.823405 B = 7533.874604 C = 8916.681606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.061 4.061 3 C 0.122 3.878 4 C -0.099 4.099 5 C 0.606 3.394 6 O -0.551 6.551 7 N -0.590 5.590 8 C 0.113 3.887 9 C -0.130 4.130 10 C -0.138 4.138 11 C 0.172 3.828 12 H 0.073 0.927 13 N -0.604 5.604 14 C 0.107 3.893 15 C -0.266 4.266 16 H 0.078 0.922 17 C 0.031 3.969 18 N -0.913 5.913 19 Si 0.913 3.087 20 H -0.288 1.288 21 H -0.309 1.309 22 H -0.272 1.272 23 C 0.069 3.931 24 N -0.190 5.190 25 N -0.064 5.064 26 N -0.361 5.361 27 C 0.116 3.884 28 C -0.173 4.173 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.114 0.886 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.017 0.983 41 H 0.038 0.962 42 H 0.032 0.968 43 H 0.263 0.737 44 H 0.131 0.869 45 H 0.060 0.940 46 H 0.100 0.900 47 H 0.107 0.893 48 H 0.083 0.917 49 H 0.069 0.931 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.507 -12.362 8.030 23.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.100 4.100 3 C -0.016 4.016 4 C -0.238 4.238 5 C 0.392 3.608 6 O -0.429 6.429 7 N -0.321 5.321 8 C -0.009 4.009 9 C -0.168 4.168 10 C -0.178 4.178 11 C 0.064 3.936 12 H 0.091 0.909 13 N -0.328 5.328 14 C -0.037 4.037 15 C -0.395 4.395 16 H 0.096 0.904 17 C -0.169 4.169 18 N -0.555 5.555 19 Si 0.747 3.253 20 H -0.217 1.217 21 H -0.239 1.239 22 H -0.197 1.197 23 C -0.055 4.055 24 N -0.063 5.063 25 N -0.043 5.043 26 N -0.146 5.146 27 C -0.005 4.005 28 C -0.231 4.231 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.132 0.868 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.035 0.965 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.072 0.928 44 H 0.148 0.852 45 H 0.079 0.921 46 H 0.118 0.882 47 H 0.126 0.874 48 H 0.102 0.898 49 H 0.088 0.912 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.081 -11.412 8.345 22.952 hybrid contribution -0.251 0.083 -0.892 0.931 sum -18.331 -11.329 7.453 22.802 Atomic orbital electron populations 1.21717 0.93218 1.02644 1.02395 1.20409 0.97196 0.87388 1.05038 1.21851 0.97162 0.96160 0.86426 1.21183 1.14889 0.92364 0.95333 1.16749 0.78021 0.83453 0.82567 1.90707 1.47100 1.21637 1.83473 1.48017 1.54468 1.23968 1.05658 1.21624 0.97329 1.01817 0.80140 1.21894 0.96402 0.99051 0.99492 1.22140 1.00407 0.95409 0.99819 1.20704 0.91628 0.89610 0.91678 0.90918 1.43921 1.16318 0.99061 1.73473 1.21412 0.95852 0.89578 0.96904 1.18801 0.84482 1.26807 1.09375 0.90400 1.25559 0.94536 0.99587 0.97185 1.69754 1.02904 1.40698 1.42128 0.86478 0.75395 0.79860 0.83606 1.21693 1.23865 1.19715 1.23320 0.93188 0.83693 1.05303 1.74546 1.10365 1.17878 1.03474 1.82098 1.19638 0.98599 1.03944 1.50507 1.45448 1.11353 1.07342 1.21967 1.00140 1.01965 0.76458 1.22254 0.94921 1.03625 1.02283 0.93063 0.91412 0.91286 0.86807 0.90529 0.91729 0.89285 0.91553 0.91268 0.91514 0.92580 0.96510 0.94410 0.94931 0.92751 0.85239 0.92118 0.88174 0.87438 0.89823 0.91170 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.89 37.16 0.37 -0.78 16 2 C -0.06 -0.57 5.56 -27.88 -0.16 -0.72 16 3 C 0.12 1.55 6.27 -81.88 -0.51 1.03 16 4 C -0.10 -1.59 6.71 -83.55 -0.56 -2.15 16 5 C 0.61 10.06 7.68 -12.48 -0.10 9.97 16 6 O -0.55 -9.20 14.22 5.28 0.08 -9.13 16 7 N -0.59 -9.76 2.98 -173.77 -0.52 -10.28 16 8 C 0.11 1.60 6.43 -3.71 -0.02 1.58 16 9 C -0.13 -1.87 6.08 -26.61 -0.16 -2.03 16 10 C -0.14 -2.46 5.11 -26.69 -0.14 -2.60 16 11 C 0.17 3.55 2.75 -67.81 -0.19 3.37 16 12 H 0.07 1.63 7.89 -51.93 -0.41 1.22 16 13 N -0.60 -14.70 2.44 -173.34 -0.42 -15.12 16 14 C 0.11 2.39 8.02 59.84 0.48 2.87 16 15 C -0.27 -7.64 9.94 -15.06 -0.15 -7.79 16 16 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 17 C 0.03 0.92 5.49 -17.43 -0.10 0.83 16 18 N -0.91 -28.54 13.97 55.49 0.78 -27.76 16 19 Si 0.91 23.30 24.56 -169.99 -4.17 19.12 16 20 H -0.29 -7.17 6.76 56.52 0.38 -6.79 16 21 H -0.31 -8.02 7.11 56.52 0.40 -7.62 16 22 H -0.27 -6.64 6.69 56.52 0.38 -6.26 16 23 C 0.07 1.29 5.47 -3.55 -0.02 1.27 16 24 N -0.19 -3.37 8.77 32.85 0.29 -3.08 16 25 N -0.06 -1.04 13.78 60.35 0.83 -0.21 16 26 N -0.36 -4.32 3.63 -56.85 -0.21 -4.53 16 27 C 0.12 0.80 7.02 -4.04 -0.03 0.77 16 28 C -0.17 -0.96 10.24 37.16 0.38 -0.58 16 29 H 0.05 0.35 6.12 -51.93 -0.32 0.03 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.11 1.25 6.58 -51.93 -0.34 0.90 16 33 H 0.08 0.49 7.18 -51.93 -0.37 0.12 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.09 1.22 7.00 -51.93 -0.36 0.86 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.06 0.97 6.74 -51.93 -0.35 0.62 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.04 0.91 2.42 -51.92 -0.13 0.79 16 42 H 0.03 0.64 6.47 -51.93 -0.34 0.31 16 43 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 44 H 0.13 2.62 4.09 -81.50 -0.33 2.29 16 45 H 0.06 1.11 7.51 -51.93 -0.39 0.72 16 46 H 0.10 0.44 7.16 -51.93 -0.37 0.07 16 47 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 49 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.07 0.38 6.12 -51.93 -0.32 0.06 16 LS Contribution 380.67 15.07 5.74 5.74 Total: -1.00 -34.38 380.67 -6.37 -40.75 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -7.86 Total: -0.54 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -0.90 Total: 5.04 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: 0.75 Total: -60.98 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.08 Total: -9.13 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -4.17 Total: 19.12 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.38 -6.37 -40.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027572696.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.474 kcal (2) G-P(sol) polarization free energy of solvation -34.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds