Wall clock time and date at job start Tue Mar 31 2020 20:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47124 * 2 1 4 4 C 1.36595 * 126.57841 * 270.02221 * 3 2 1 5 5 C 1.47522 * 125.77416 * 0.03945 * 4 3 2 6 6 O 1.21598 * 119.99593 * 6.20729 * 5 4 3 7 7 N 1.34769 * 120.00212 * 186.20172 * 5 4 3 8 8 C 1.46930 * 120.63250 * 186.43981 * 7 5 4 9 9 C 1.53189 * 108.89159 * 233.68432 * 8 7 5 10 10 C 1.53046 * 109.31468 * 305.29008 * 9 8 7 11 11 C 1.53042 * 109.53498 * 61.36619 * 10 9 8 12 12 H 1.08994 * 109.50072 * 58.62155 * 11 10 9 13 13 N 1.46502 * 109.49708 * 178.68808 * 11 10 9 14 14 C 1.46494 * 120.00044 * 59.99778 * 13 11 10 15 15 C 1.36938 * 119.99637 * 240.00032 * 13 11 10 16 16 H 1.07994 * 120.00263 * 316.50898 * 15 13 11 17 17 C 1.38818 * 119.99655 * 136.51037 * 15 13 11 18 18 N 1.31616 * 119.99836 * 179.49519 * 17 15 13 19 19 Si 1.86803 * 120.00146 * 359.49044 * 17 15 13 20 20 H 1.48502 * 109.47069 * 86.37528 * 19 17 15 21 21 H 1.48502 * 109.47132 * 206.37418 * 19 17 15 22 22 H 1.48495 * 109.47074 * 326.37204 * 19 17 15 23 23 C 1.47211 * 120.81408 * 6.58498 * 7 5 4 24 24 N 1.34404 * 108.45520 * 179.76963 * 4 3 2 25 25 N 1.28758 * 109.52556 * 0.23410 * 24 4 3 26 26 N 1.34815 * 126.57789 * 90.18871 * 3 2 1 27 27 C 1.46500 * 126.59832 * 0.02562 * 26 3 2 28 28 C 1.52995 * 109.46859 * 270.26978 * 27 26 3 29 29 H 1.08998 * 109.47387 * 300.00207 * 1 2 3 30 30 H 1.09004 * 109.47319 * 59.99686 * 1 2 3 31 31 H 1.09002 * 109.47229 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47036 * 240.00419 * 2 1 3 33 33 H 1.08997 * 109.47048 * 120.00072 * 2 1 3 34 34 H 1.09000 * 109.59066 * 113.82422 * 8 7 5 35 35 H 1.08996 * 109.58405 * 353.53898 * 8 7 5 36 36 H 1.09001 * 109.50195 * 65.24111 * 9 8 7 37 37 H 1.09003 * 109.50109 * 185.30803 * 9 8 7 38 38 H 1.08993 * 109.46289 * 181.38685 * 10 9 8 39 39 H 1.09004 * 109.45736 * 301.34991 * 10 9 8 40 40 H 1.09004 * 109.47474 * 86.81131 * 14 13 11 41 41 H 1.09009 * 109.47194 * 206.81219 * 14 13 11 42 42 H 1.09002 * 109.47479 * 326.80675 * 14 13 11 43 43 H 0.96995 * 120.00053 * 179.97438 * 18 17 15 44 44 H 1.08997 * 109.53290 * 6.53113 * 23 7 5 45 45 H 1.08998 * 109.55638 * 246.15581 * 23 7 5 46 46 H 1.09000 * 109.46793 * 30.26609 * 27 26 3 47 47 H 1.09002 * 109.47307 * 150.26698 * 27 26 3 48 48 H 1.08998 * 109.46871 * 179.97438 * 28 27 26 49 49 H 1.08993 * 109.47433 * 299.99693 * 28 27 26 50 50 H 1.08999 * 109.47036 * 60.00145 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3033 2.1884 -1.0969 5 6 2.1529 1.7672 -2.5027 6 8 1.6508 0.6912 -2.7645 7 7 2.5719 2.5750 -3.4967 8 6 2.3033 2.2356 -4.9008 9 6 3.6244 2.2501 -5.6761 10 6 4.3115 3.6036 -5.4801 11 6 4.6204 3.8105 -3.9956 12 1 5.2596 3.0020 -3.6408 13 7 5.3062 5.0921 -3.8128 14 6 4.6489 6.3383 -4.2141 15 6 6.5616 5.1251 -3.2668 16 1 6.7920 4.5159 -2.4054 17 6 7.5380 5.9418 -3.8206 18 7 8.7417 5.9810 -3.2899 19 14 7.1435 6.9848 -5.3193 20 1 6.5543 8.2761 -4.8825 21 1 8.3897 7.2431 -6.0845 22 1 6.1731 6.2645 -6.1821 23 6 3.3106 3.8136 -3.2011 24 7 2.7244 3.3944 -0.6788 25 7 2.7370 3.4233 0.6083 26 7 2.3035 2.1771 1.0826 27 6 2.1670 1.7756 2.4849 28 6 0.7572 2.1100 2.9762 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6199 2.9685 -5.3297 35 1 1.8571 1.2428 -4.9578 36 1 4.2726 1.4561 -5.3054 37 1 3.4259 2.0926 -6.7363 38 1 5.2399 3.6255 -6.0507 39 1 3.6526 4.3991 -5.8283 40 1 4.0304 6.7034 -3.3942 41 1 5.4044 7.0848 -4.4597 42 1 4.0229 6.1541 -5.0873 43 1 9.4241 6.5513 -3.6770 44 1 3.5302 3.8613 -2.1346 45 1 2.7092 4.6752 -3.4914 46 1 2.3378 0.7027 2.5739 47 1 2.8990 2.3114 3.0892 48 1 0.6555 1.8109 4.0194 49 1 0.5863 3.1828 2.8872 50 1 0.0252 1.5742 2.3719 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027572696.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:12 Heat of formation + Delta-G solvation = 75.178344 kcal Electronic energy + Delta-G solvation = -30803.417204 eV Core-core repulsion = 26868.349293 eV Total energy + Delta-G solvation = -3935.067911 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.42516 -40.95581 -39.00757 -36.97189 -36.62542 -34.75556 -34.02624 -33.46504 -31.57032 -31.09898 -30.56396 -28.09264 -26.79916 -25.75900 -25.29499 -24.91054 -24.09019 -22.84202 -21.37466 -21.16282 -20.20513 -18.94836 -18.56278 -17.58082 -17.38261 -17.17939 -16.93107 -16.16616 -15.89494 -15.64907 -15.53703 -15.38962 -15.22940 -15.02765 -14.74158 -14.47537 -14.24304 -14.05204 -13.98820 -13.86445 -13.78102 -13.55457 -13.31645 -13.20004 -13.07091 -12.63560 -12.58333 -12.34946 -12.19538 -12.11056 -11.99610 -11.86053 -11.75279 -11.59728 -11.50095 -11.29341 -11.15888 -10.78711 -10.70813 -10.26330 -9.67591 -8.66699 -8.15179 -5.72911 0.10898 0.57255 1.09683 1.30886 1.40514 1.53261 1.92592 2.19196 2.40525 3.04279 3.12816 3.21940 3.41954 3.51219 3.67249 3.94605 3.95972 4.01343 4.07576 4.14480 4.21790 4.23815 4.29838 4.37871 4.39804 4.45838 4.47330 4.56325 4.58005 4.73232 4.75080 4.80831 4.86428 4.93419 4.95710 4.97768 5.03611 5.05436 5.09459 5.18292 5.22231 5.37949 5.43431 5.45683 5.52763 5.67042 5.96531 6.15978 6.29637 6.83599 6.97247 7.11031 7.57726 8.01825 9.00975 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014313 B = 0.003716 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.823405 B = 7533.874604 C = 8916.681606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.059 4.059 3 C 0.136 3.864 4 C -0.132 4.132 5 C 0.603 3.397 6 O -0.554 6.554 7 N -0.594 5.594 8 C 0.112 3.888 9 C -0.119 4.119 10 C -0.130 4.130 11 C 0.171 3.829 12 H 0.039 0.961 13 N -0.616 5.616 14 C 0.104 3.896 15 C -0.259 4.259 16 H 0.029 0.971 17 C -0.027 4.027 18 N -0.962 5.962 19 Si 0.981 3.019 20 H -0.275 1.275 21 H -0.316 1.316 22 H -0.250 1.250 23 C 0.085 3.915 24 N -0.224 5.224 25 N -0.100 5.100 26 N -0.346 5.346 27 C 0.100 3.900 28 C -0.166 4.166 29 H 0.066 0.934 30 H 0.040 0.960 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.104 0.896 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.066 0.934 43 H 0.263 0.737 44 H 0.113 0.887 45 H 0.066 0.934 46 H 0.136 0.864 47 H 0.112 0.888 48 H 0.114 0.886 49 H 0.048 0.952 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.412 -13.606 7.481 26.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.098 4.098 3 C -0.004 4.004 4 C -0.272 4.272 5 C 0.390 3.610 6 O -0.433 6.433 7 N -0.326 5.326 8 C -0.009 4.009 9 C -0.158 4.158 10 C -0.169 4.169 11 C 0.064 3.936 12 H 0.058 0.942 13 N -0.341 5.341 14 C -0.039 4.039 15 C -0.389 4.389 16 H 0.047 0.953 17 C -0.223 4.223 18 N -0.606 5.606 19 Si 0.811 3.189 20 H -0.203 1.203 21 H -0.245 1.245 22 H -0.174 1.174 23 C -0.041 4.041 24 N -0.096 5.096 25 N -0.078 5.078 26 N -0.132 5.132 27 C -0.019 4.019 28 C -0.224 4.224 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.133 0.867 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.073 0.927 37 H 0.122 0.878 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.044 0.956 41 H 0.043 0.957 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.130 0.870 45 H 0.085 0.915 46 H 0.154 0.846 47 H 0.130 0.870 48 H 0.133 0.867 49 H 0.067 0.933 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.039 -12.671 7.818 25.774 hybrid contribution 0.611 0.316 -0.503 0.853 sum -20.427 -12.355 7.314 24.968 Atomic orbital electron populations 1.21697 0.91941 1.03958 1.01835 1.20583 0.98072 0.85021 1.06116 1.22376 0.95282 0.97136 0.85605 1.21433 1.16754 0.92923 0.96114 1.16888 0.77817 0.83363 0.82937 1.90689 1.47368 1.21554 1.83694 1.48043 1.54347 1.23319 1.06858 1.21813 0.97472 1.02957 0.78703 1.21838 0.95906 0.96403 1.01649 1.22007 1.00304 0.98036 0.96603 1.20748 0.91652 0.86950 0.94288 0.94227 1.43982 1.15253 1.01222 1.73620 1.21497 0.95719 0.88119 0.98573 1.18585 0.86751 1.25588 1.08011 0.95302 1.26323 0.94132 1.01306 1.00500 1.69917 1.04272 1.42300 1.44117 0.85375 0.75298 0.78566 0.79674 1.20287 1.24528 1.17371 1.22921 0.92242 0.84907 1.03989 1.74481 1.11492 1.19251 1.04334 1.81967 1.21252 1.00999 1.03616 1.50859 1.43423 1.09892 1.08991 1.22565 1.01382 1.04152 0.73760 1.22239 0.93718 1.02305 1.04138 0.91553 0.94067 0.88999 0.88384 0.86727 0.89628 0.88452 0.92727 0.87799 0.93214 0.91060 0.95646 0.95738 0.91576 0.92773 0.86965 0.91525 0.84623 0.86952 0.86726 0.93295 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.89 71.98 0.71 -1.14 16 2 C -0.06 -0.96 5.56 29.85 0.17 -0.79 16 3 C 0.14 3.34 6.27 41.72 0.26 3.61 16 4 C -0.13 -4.34 6.71 40.82 0.27 -4.06 16 5 C 0.60 20.07 7.68 86.69 0.67 20.74 16 6 O -0.55 -18.18 14.22 -4.02 -0.06 -18.24 16 7 N -0.59 -19.42 2.98 -821.96 -2.45 -21.87 16 8 C 0.11 2.92 6.43 86.36 0.56 3.47 16 9 C -0.12 -3.18 6.08 30.67 0.19 -2.99 16 10 C -0.13 -4.43 5.11 30.62 0.16 -4.27 16 11 C 0.17 7.16 2.75 45.07 0.12 7.29 16 12 H 0.04 1.88 7.89 -2.39 -0.02 1.86 16 13 N -0.62 -30.37 2.44 -702.34 -1.71 -32.08 16 14 C 0.10 4.50 8.02 127.77 1.02 5.53 16 15 C -0.26 -15.59 9.94 84.03 0.84 -14.75 16 16 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 17 C -0.03 -1.65 5.49 84.86 0.47 -1.18 16 18 N -0.96 -62.56 13.97 21.65 0.30 -62.26 16 19 Si 0.98 48.32 24.56 68.60 1.68 50.00 16 20 H -0.28 -12.89 6.76 99.48 0.67 -12.22 16 21 H -0.32 -15.75 7.11 99.48 0.71 -15.04 16 22 H -0.25 -11.29 6.69 99.48 0.67 -10.62 16 23 C 0.08 3.17 5.47 86.31 0.47 3.64 16 24 N -0.22 -8.30 8.77 -49.99 -0.44 -8.74 16 25 N -0.10 -3.35 13.78 37.02 0.51 -2.84 16 26 N -0.35 -8.07 3.63 -333.78 -1.21 -9.28 16 27 C 0.10 1.16 7.02 86.38 0.61 1.77 16 28 C -0.17 -1.43 10.24 71.98 0.74 -0.70 16 29 H 0.07 0.70 6.12 -2.39 -0.01 0.69 16 30 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.10 2.00 6.58 -2.39 -0.02 1.99 16 33 H 0.11 1.01 7.18 -2.39 -0.02 0.99 16 34 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.10 2.43 7.00 -2.39 -0.02 2.41 16 36 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.07 2.22 6.74 -2.38 -0.02 2.20 16 40 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.02 1.14 2.42 -2.38 -0.01 1.13 16 42 H 0.07 2.40 6.47 -2.39 -0.02 2.39 16 43 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 44 H 0.11 4.77 4.09 -40.65 -0.17 4.60 16 45 H 0.07 2.39 7.51 -2.39 -0.02 2.38 16 46 H 0.14 0.65 7.16 -2.39 -0.02 0.63 16 47 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 49 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.07 0.58 6.12 -2.39 -0.01 0.56 16 Total: -1.00 -80.27 380.67 4.59 -75.68 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.72 Total: 13.48 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 7.24 Total: 16.14 kcal Atomic # 7 Polarization: -132.07 SS G_CDS: -5.01 Total: -137.08 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.06 Total: -18.24 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 1.68 Total: 50.00 kcal Total: -80.27 4.59 -75.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027572696.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.861 kcal (2) G-P(sol) polarization free energy of solvation -80.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds